BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2160376 =	178 (0.870)	14 (0.080)	7/136	NT	8.2%	intergenic (+9/‑352)	yheS/mutS_2	putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS
*	?	USA300TCH1516_ALE	2160413 =	163 (0.940)	14 (0.080)	7/136	NT	8.2%	intergenic (+46/‑315)	yheS/mutS_2	putative ABC transporter ATP‑binding protein YheS/DNA mismatch repair protein MutS

Only 100 of 260 total aligned reads displayed.

AACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTAAATT  >  USA300TCH1516_ALE/2160324‑2160502

aaCACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttt                                                                                          >  2:313351/1‑91 (MQ=255)

aaCACGCTATGACTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAAAGTTAttt                                                                                          >  2:2436712/1‑91 (MQ=255)

 acacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtttt                                                                                         >  1:1550236/1‑91 (MQ=255)

  cacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttttt                                                                                        >  1:349375/1‑91 (MQ=255)

  cacGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttttt                                                                                        >  1:246474/1‑91 (MQ=255)

  cacGCGATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATGTACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAttttt                                                                                        <  2:2583295/91‑1 (MQ=255)

   acGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTAtttttt                                                                                       <  1:2745589/91‑1 (MQ=255)

     gCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTa                                                                                     <  2:289182/91‑1 (MQ=255)

     gCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTa                                                                                     <  1:734397/91‑1 (MQ=255)

     gCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTa                                                                                     >  1:3113699/1‑91 (MQ=255)

     gCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTa                                                                                     >  2:75643/1‑91 (MQ=255)

      cTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTAc                                                                                    <  2:1143131/91‑1 (MQ=255)

      cTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTAc                                                                                    <  1:3530442/91‑1 (MQ=255)

       tATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACa                                                                                   >  2:1792927/1‑91 (MQ=255)

        aTGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACaa                                                                                  >  2:2543116/1‑91 (MQ=255)

        aTGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACaa                                                                                  <  1:2769388/91‑1 (MQ=255)

          gTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaat                                                                                <  2:2857171/91‑1 (MQ=255)

           tCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatt                                                                               >  1:2030544/1‑91 (MQ=255)

            cTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattt                                                                              <  1:1365942/91‑1 (MQ=255)

             tAAATGGGAAGAATTACAACAAAAACTATAAATATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatttt                                                                             <  2:1449552/91‑1 (MQ=255)

             tAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTCTAGTGAGAGATATTTTTTTACAaattta                                                                             >  2:2788305/1‑90 (MQ=255)

             tAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatttt                                                                             <  2:1644295/91‑1 (MQ=255)

             tAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatttt                                                                             <  2:1137306/91‑1 (MQ=255)

              aaaTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTCTAGTTAGAGTTATTTTTTTACAaatctta                                                                            >  1:2369366/1‑91 (MQ=255)

              aaaTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatttta                                                                            <  2:710658/91‑1 (MQ=255)

              aaaTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaatttta                                                                            >  1:1234564/1‑91 (MQ=255)

               aaTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaa                                                                           >  1:1532819/1‑91 (MQ=255)

                aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                                          <  1:2694081/91‑1 (MQ=255)

                aTGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaat                                                                          >  1:2322714/1‑91 (MQ=255)

                  gggAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaattt                                                                        <  1:200144/91‑1 (MQ=255)

                  gggAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaattt                                                                        <  2:525616/91‑1 (MQ=255)

                   ggAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaatttt                                                                       >  1:3206741/1‑91 (MQ=255)

                   ggAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaatttt                                                                       <  2:2906811/91‑1 (MQ=255)

                   ggAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAaattttaatttt                                                                       <  2:1000378/91‑1 (MQ=255)

                    gaagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAttttt                                                                      >  2:3865675/1‑91 (MQ=255)

                    gaagaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAttttt                                                                      >  2:1426719/1‑91 (MQ=255)

                       gaaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAtttttttt                                                                   >  2:26913/1‑90 (MQ=255)

                        aaTTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTAt                                                                  >  1:1171848/1‑91 (MQ=255)

                             caacaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTcaca                                                             >  1:3736919/1‑91 (MQ=255)

                              aacaaAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACaa                                                            >  2:727149/1‑91 (MQ=255)

                                   aaaCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATaaaa                                                       >  2:801395/1‑91 (MQ=255)

                                    taaaatttgtaaaaaaataactctaactatagcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATaaaaa                                                      >  1:2075794‑M2/54‑91 (MQ=255)

                                    aaCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATaaaaa                                                      >  2:1352698/1‑91 (MQ=255)

                                     aCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAAc                                                     >  2:2589129/1‑91 (MQ=255)

                                     aCTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAAc                                                     >  2:3369777/1‑91 (MQ=255)

                                       tataAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGc                                                   <  2:1605676/91‑1 (MQ=255)

                                       tataAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGc                                                   <  2:3594848/91‑1 (MQ=255)

                                        ataAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCt                                                  <  1:134255/91‑1 (MQ=255)

                                         taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 <  2:1822281/91‑1 (MQ=255)

                                         taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 >  2:2201067/1‑91 (MQ=255)

                                         taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 >  1:490579/1‑91 (MQ=255)

                                         taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 >  2:1069185/1‑91 (MQ=255)

                                         taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 >  1:3823306/1‑91 (MQ=255)

                                         taAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTg                                                 >  1:2434367/1‑91 (MQ=255)

                                           aaaaTATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGATATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAATGCTgct                                               >  2:1278916/1‑89 (MQ=255)

                                             aaTATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGatat                                             <  2:1936303/91‑1 (MQ=255)

                                              atatACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtatt                                            <  1:1716907/91‑1 (MQ=255)

                                              atatACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtatt                                            <  2:2599504/91‑1 (MQ=255)

                                                ataCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGAtattat                                          <  2:1157739/91‑1 (MQ=255)

                                                 taCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACGATAAAAACGCTGATATtata                                         <  1:1567287/91‑1 (MQ=255)

                                                 taCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATtata                                         <  1:3942610/91‑1 (MQ=255)

                                                 taCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATtata                                         <  1:288835/91‑1 (MQ=255)

                                                  aCATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAg                                        >  2:137036/1‑91 (MQ=255)

                                                   cATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGc                                       <  2:2017882/91‑1 (MQ=255)

                                                   cATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGc                                       >  2:2067246/1‑91 (MQ=255)

                                                    ATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCt                                      >  1:2211080‑M1/1‑91 (MQ=255)

                                                    ATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAAATTTTTTATTCACAATAAAAACGCTGAtattataact                                      <  2:3112729‑M1/91‑4 (MQ=255)

                                                     TAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTa                                     <  1:702532‑M1/91‑1 (MQ=255)

                                                     TAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTa                                     <  2:3563657‑M1/91‑1 (MQ=255)

                                                      aactctaactatagcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTCTCGCTAt                                    >  2:3642211‑M2/36‑91 (MQ=255)

                                                       ACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATc                                   >  2:1570735‑M1/1‑91 (MQ=255)

                                                        ctctaactattgcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATcc                                  >  2:858584‑M2/34‑91 (MQ=255)

                                                        ctctaactatagcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATcc                                  >  1:1049366‑M2/34‑91 (MQ=255)

                                                          CTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCcac                                >  2:2657028‑M1/1‑91 (MQ=255)

                                                             ACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACACTAAAAACGCTGATATTATAGCTATCCACAGa                             <  2:2527526‑M1/91‑1 (MQ=255)

                                                             ACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGa                             <  2:954060‑M1/91‑1 (MQ=255)

                                                             ACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGa                             <  1:329647‑M1/91‑1 (MQ=255)

                                                             ACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGa                             <  1:2158621‑M1/91‑1 (MQ=255)

                                                                 tagcgattttacagttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTa                         >  2:1364973‑M2/25‑91 (MQ=255)

                                                                  aaaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTAt                        <  2:435281/91‑1 (MQ=255)

                                                                  aaaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTAt                        <  2:3285118/91‑1 (MQ=255)

                                                                  aaaaTCGCTATAGTTAGAGTTATTTTATTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTAt                        >  2:2245445/1‑91 (MQ=255)

                                                                   aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc                       <  1:3818644/91‑1 (MQ=255)

                                                                   aaaTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATc                       <  2:2726780/91‑1 (MQ=255)

                                                                     aTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCt                     >  1:84965/1‑91 (MQ=255)

                                                                     aTCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACGTATCCt                     <  2:3630611/91‑1 (MQ=255)

                                                                      tCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTa                    >  1:3030672/1‑91 (MQ=255)

                                                                      tCGCTATAGTTAGAGTTATCTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTa                    >  2:3453708/1‑91 (MQ=255)

                                                                        gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt                  <  2:718178/91‑1 (MQ=255)

                                                                        gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt                  >  1:3406769/1‑91 (MQ=255)

                                                                        gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt                  <  2:915033/91‑1 (MQ=255)

                                                                        gCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGt                  <  2:2992948/91‑1 (MQ=255)

                                                                           ataGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTAc               >  1:1825641/1‑91 (MQ=255)

                                                                            taGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTAcc              >  1:380901/1‑91 (MQ=255)

                                                                             agttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTAccc             >  1:777944‑M2/13‑91 (MQ=255)

                                                                             agttagagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTAccc             <  1:1155538‑M2/79‑1 (MQ=255)

                                                                                  gagttatTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAg        >  2:308148‑M2/8‑91 (MQ=255)

                                                                                    gttatTTTTTTGCAAATTTTAATGTTTTTATTCACAATAAAAACGCTGATATTATAGCTTTCCACAGACTTATCCTAGTTACCCACAAGTa      <  2:3015438‑M2/86‑1 (MQ=255)

                                                                                       atTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTAAAt   <  1:359617‑M2/89‑1 (MQ=255)

                                                                                        tTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTAAAtt  <  1:1033878‑M2/90‑1 (MQ=255)

AACACGCTATGTCTAAATGGGAAGAATTACAACAAAAACTATAAAAATATACATAACTCTAACTGTAAAATCGCTATAGTTAGAGTTATTTTTTTACAAATTTTAATTTTTTTATTCACAATAAAAACGCTGATATTATAGCTATCCACAGACTTATCCTAGTTACCCACAAGTAAATT  >  USA300TCH1516_ALE/2160324‑2160502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.