BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2380461 =	146 (0.720)	20 (0.120)	10/132	NT	13.3%	intergenic (+134/+53)	USA300HOU_RS12230/swrC	hypothetical protein/Swarming motility protein SwrC
*	?	USA300TCH1516_ALE	2380507 =	140 (0.840)	20 (0.120)	10/132	NT	13.3%	intergenic (+180/+7)	USA300HOU_RS12230/swrC	hypothetical protein/Swarming motility protein SwrC

Only 100 of 263 total aligned reads displayed.

CGATTAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGTTGATGA  >  USA300TCH1516_ALE/2380417‑2380597

cGATTAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTta                                                                                            >  1:555873/1‑91 (MQ=255)

  aTTAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTtata                                                                                          >  2:1274709/1‑91 (MQ=255)

  aTTAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTtata                                                                                          <  2:2132926/91‑1 (MQ=255)

  aTTAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTtata                                                                                          >  2:3255622/1‑91 (MQ=255)

   ttAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTatat                                                                                         <  1:2053834/91‑1 (MQ=255)

    tAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTAtatt                                                                                        <  1:3875466/91‑1 (MQ=255)

       aTCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATtatc                                                                                     >  1:2874703/1‑91 (MQ=255)

        tCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATtatct                                                                                    <  1:1591418/91‑1 (MQ=255)

         cGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATtatcta                                                                                   >  2:900202/1‑91 (MQ=255)

         cGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATtatcta                                                                                   >  2:3318284/1‑91 (MQ=255)

         cGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATtatcta                                                                                   <  1:1632319/91‑1 (MQ=255)

         cGCACGGGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGGCCGCTTTTATGGCTTTTATATtatcta                                                                                   <  2:1555759/91‑1 (MQ=255)

           cACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATtatctatc                                                                                 >  2:2212353/1‑91 (MQ=255)

           cACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATACtatctatc                                                                                 >  2:3353684/1‑91 (MQ=255)

             cGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGt                                                                               <  1:3006032/91‑1 (MQ=255)

               tGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGttt                                                                             >  1:523068/1‑91 (MQ=255)

                gAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTa                                                                            <  1:1754166/91‑1 (MQ=255)

                 aaaTAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAg                                                                           <  2:453792/91‑1 (MQ=255)

                 aaaTAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAg                                                                           <  1:3497335/91‑1 (MQ=255)

                  acgattcactaaacgatagataatataaaagccataaaagcggtcatgatattgactacttttatggcttttATATTATCCATCGTTTAGt                                                                          >  2:539202‑M2/73‑91 (MQ=255)

                   aTAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTg                                                                         <  1:254800/91‑1 (MQ=255)

                   aTAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTg                                                                         <  2:3661597/91‑1 (MQ=255)

                    tAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGa                                                                        <  2:1388346/91‑1 (MQ=255)

                     aaGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGaa                                                                       <  2:259771/91‑1 (MQ=255)

                      aGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAAt                                                                      >  2:3414628/1‑91 (MQ=255)

                       ggTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATc                                                                     >  2:1009874/1‑91 (MQ=255)

                        gTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCGATCGTTTAGTGAATCg                                                                    <  2:3237242/91‑1 (MQ=255)

                         tCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGt                                                                   <  2:3736839/91‑1 (MQ=255)

                         tCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGt                                                                   >  1:2392825/1‑91 (MQ=255)

                         tCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGt                                                                   >  2:3156401/1‑91 (MQ=255)

                          cTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGtt                                                                  <  2:1960022/91‑1 (MQ=255)

                          cTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGAACGCTTTTATGGCTTTTTTATTATCTATCGTTTAGTGAATCGtt                                                                  >  2:217118/1‑91 (MQ=255)

                             aaaTTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGttttt                                                               >  2:1254822/1‑91 (MQ=255)

                              aaTTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGtttttt                                                              <  1:1679119/91‑1 (MQ=255)

                               aTTTGAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGttttttt                                                             >  1:3896804/1‑91 (MQ=255)

                               aTTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGttttttt                                                             >  2:1326981/1‑91 (MQ=255)

                               aTTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGttttttt                                                             <  2:205938/91‑1 (MQ=255)

                                tttCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTta                                                            <  2:1299513/91‑1 (MQ=255)

                                tttCAAAGTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTta                                                            <  1:1966404/91‑1 (MQ=255)

                                 ttCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTtaa                                                           >  2:2394980/1‑91 (MQ=255)

                                 ttCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTtaa                                                           >  2:3343385/1‑91 (MQ=255)

                                  tCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTCGTGAATCGTTTTTTtaca                                                          >  1:2659380/1‑89 (MQ=255)

                                  tCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTtaaa                                                          >  1:151827/1‑91 (MQ=255)

                                   cAAATTTTAAAAGGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTtaaag                                                         >  1:3030050/1‑91 (MQ=255)

                                      aTTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTtaaagtaa                                                      <  2:1022502/91‑1 (MQ=255)

                                        tttAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTtaaagtaaag                                                    <  2:789612/91‑1 (MQ=255)

                                        tttAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTCATATTATCTATCGTTTAGTGAATCGTTTTTTtaaagtaaag                                                    <  2:3006213/91‑1 (MQ=255)

                                         ttAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAaga                                                   >  2:2126276/1‑91 (MQ=255)

                                          tAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAagag                                                  <  2:2559074/91‑1 (MQ=255)

                                          tAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAagag                                                  <  2:1028434/91‑1 (MQ=255)

                                          tAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAagag                                                  <  1:175081/91‑1 (MQ=255)

                                            AAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGaa                                                >  1:3103671‑M1/1‑91 (MQ=255)

                                            AAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGaa                                                <  1:2975549‑M1/91‑1 (MQ=255)

                                              aagccataaaagcggtcatgatattgactacttttatggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAAtt                                              >  1:3670616‑M2/45‑91 (MQ=255)

                                              AAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAAtt                                              <  2:584392‑M1/91‑1 (MQ=255)

                                                GCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTc                                            >  1:2123201‑M1/1‑91 (MQ=255)

                                                GCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTc                                            >  2:1746286‑M1/1‑91 (MQ=255)

                                                GCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTc                                            <  1:2601150‑M1/91‑1 (MQ=255)

                                                 CCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCa                                           <  1:2353695‑M1/91‑1 (MQ=255)

                                                  CATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCat                                          <  1:2516664‑M1/91‑1 (MQ=255)

                                                   ATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCata                                         >  1:3588643‑M1/1‑91 (MQ=255)

                                                   ATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCata                                         >  2:3840550‑M1/1‑91 (MQ=255)

                                                     AAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCatata                                       <  1:3812957‑M1/91‑1 (MQ=255)

                                                      aaagcggtcatgatattgactacttttatggcttttAGATTATCTACCGATTAGTGAATCGCTTTTTTAAAGTAAAAAAAACTTCatctat                                      >  2:2624243‑M2/37‑91 (MQ=255)

                                                        AGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTa                                    >  1:1085099‑M1/1‑91 (MQ=255)

                                                        AGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTa                                    <  2:1136941‑M1/91‑1 (MQ=255)

                                                          tagtCAATATCATGACCGCTTTTATGGCTTTTATATTAGCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACt                                  <  2:3459490/91‑1 (MQ=255)

                                                          cggtcatgatattgactacttttatggctattATATTATCTATCGCTTAGTGAATCGTCTGTTTAAAGTAAAGAGAATTTCATATATTACt                                  >  1:1648237‑M2/33‑91 (MQ=255)

                                                           ggtcatgatattgactacttttatggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTg                                 >  2:2887247‑M2/32‑91 (MQ=255)

                                                           ggtcatgatattgactacttttatggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTg                                 >  1:3119412‑M2/32‑91 (MQ=255)

                                                            gtCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTgg                                <  1:2764054/91‑1 (MQ=255)

                                                                atatCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACa                            <  2:1484720/91‑1 (MQ=255)

                                                                 tatCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACaa                           <  2:3513188/91‑1 (MQ=255)

                                                                   tCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACt                         >  1:661961/1‑91 (MQ=255)

                                                                    cATTACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTa                        <  2:2525197/91‑1 (MQ=255)

                                                                     aTGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTAc                       >  2:682951/1‑91 (MQ=255)

                                                                     aTGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTAc                       >  2:275361/1‑91 (MQ=255)

                                                                     aTGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTAc                       <  2:3895022/91‑1 (MQ=255)

                                                                     aTGACCGCTTTTATGGCTTTTATATTATCAATCGTTTAGTGAATCGTTTTTTTATTTTAAATAGAATTTCATATATTACTGGTACAACTAc                       >  2:3448601/1‑91 (MQ=255)

                                                                        aCCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAg                    >  1:3766551/1‑91 (MQ=255)

                                                                         ccGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAgt                   <  1:742226/91‑1 (MQ=255)

                                                                          cGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAgtg                  >  1:950964/1‑91 (MQ=255)

                                                                          cGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAgtg                  >  1:2828644/1‑91 (MQ=255)

                                                                           gCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAgtgt                 <  2:2463378/91‑1 (MQ=255)

                                                                           gCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAgtgt                 <  2:659209/91‑1 (MQ=255)

                                                                            cttttatggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGtt                <  2:364356‑M2/77‑1 (MQ=255)

                                                                             ttttatggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGTATTTCATATATTACTGGTACAACTACAAGTGTta               <  2:19027‑M2/78‑1 (MQ=255)

                                                                              tttatggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTtaa              <  2:2269684‑M2/79‑1 (MQ=255)

                                                                                tatggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTtaata            >  1:2713637‑M2/11‑91 (MQ=255)

                                                                                  tggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATaaa          >  1:3154041‑M2/9‑91 (MQ=255)

                                                                                   ggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTTAAGAGAATTTCATTTTTTACTGGTTCCACTACAAGTGTTAATAAAg         >  2:827763‑M2/8‑91 (MQ=255)

                                                                                   ggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAg         >  2:492557‑M2/8‑91 (MQ=255)

                                                                                   ggcttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAg         <  1:1292901‑M2/84‑1 (MQ=255)

                                                                                     cttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGtt       >  1:1459288‑M2/6‑91 (MQ=255)

                                                                                      ttttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGTtg      >  2:2968058‑M2/5‑91 (MQ=255)

                                                                                      ttttAAATTATTTATCGTTTAGGGAATGGTTTTTTTAAAGTCAGGAAAATTACATAGATTACTGGTACAACTACAGGTGTTAATAATGTtg      <  2:3582738/91‑1 (MQ=255)

                                                                                       tttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGTtga     <  2:3399474‑M2/88‑1 (MQ=255)

                                                                                        ttATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGTtgat    <  1:2201158‑M2/89‑1 (MQ=255)

                                                                                         tATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGTtgatg   <  1:1010568‑M2/90‑1 (MQ=255)

                                                                                          atatTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGTtgatga  >  1:1788964/1‑91 (MQ=255)

CGATTAAATCGCACGTGAAATAAGGTCTAAAATTTCAAATTTTAAAAAGCCATAAAAGTAGTCAATATCATGACCGCTTTTATGGCTTTTATATTATCTATCGTTTAGTGAATCGTTTTTTTAAAGTAAAGAGAATTTCATATATTACTGGTACAACTACAAGTGTTAATAAAGTTGATGA  >  USA300TCH1516_ALE/2380417‑2380597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.