BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2483085 =	206 (1.010)	29 (0.170)	16/136	NT	15.4%	intergenic (+5/‑158)	hssS/USA300HOU_RS12790	Heme sensor protein HssS/putative HTH‑type transcriptional regulator
*	?	USA300TCH1516_ALE	2483126 =	143 (0.830)	29 (0.170)	16/136	NT	15.4%	intergenic (+46/‑117)	hssS/USA300HOU_RS12790	Heme sensor protein HssS/putative HTH‑type transcriptional regulator

Only 100 of 278 total aligned reads displayed.

TATGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGTTT  >  USA300TCH1516_ALE/2483036‑2483216

tATGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTAt                                                                                            >  2:1976246/1‑91 (MQ=255)

tATGTAACCACCTTTACTATTACACTACCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTAt                                                                                            >  2:2242523/1‑91 (MQ=255)

 aTGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATc                                                                                           <  2:1404993/91‑1 (MQ=255)

  tGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCt                                                                                          >  1:2266221/1‑91 (MQ=255)

  tGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCt                                                                                          >  1:1280797/1‑91 (MQ=255)

    tAACCACCTTTACTATTACACTGCCGTATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCttt                                                                                        <  2:3420859/91‑1 (MQ=255)

    tAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCttt                                                                                        <  1:1278136/91‑1 (MQ=255)

      accaccTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTta                                                                                      >  2:2215148/1‑91 (MQ=255)

      accaccTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTta                                                                                      >  1:3115119/1‑91 (MQ=255)

       ccaccTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGACAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTtat                                                                                     >  2:2523032/1‑91 (MQ=255)

          ccTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATAtt                                                                                  <  1:2905894/91‑1 (MQ=255)

          ccTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCCCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATAtt                                                                                  >  2:3059179/1‑91 (MQ=255)

            tttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGa                                                                                <  2:1355699/91‑1 (MQ=255)

            tttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGa                                                                                >  2:2906837/1‑91 (MQ=255)

             ttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAt                                                                               >  1:2024530/1‑91 (MQ=255)

             ttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAt                                                                               >  2:1051589/1‑91 (MQ=255)

             ttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAt                                                                               >  1:2346284/1‑91 (MQ=255)

              tACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAtt                                                                              >  2:206958/1‑91 (MQ=255)

              tACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAtt                                                                              >  1:1799764/1‑91 (MQ=255)

              tACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAtt                                                                              <  2:1452935/91‑1 (MQ=255)

              tACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAtt                                                                              >  2:638180/1‑91 (MQ=255)

              tACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAtt                                                                              >  1:3868602/1‑91 (MQ=255)

               aCTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGCTTa                                                                             >  2:1622111/1‑91 (MQ=255)

               aCTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTa                                                                             >  1:464125/1‑91 (MQ=255)

               aCTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTa                                                                             >  1:1530638/1‑91 (MQ=255)

               aCTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTa                                                                             >  2:3181791/1‑91 (MQ=255)

                cTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAg                                                                            <  1:2379036/91‑1 (MQ=255)

                 tATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgc                                                                           >  1:2042113/1‑91 (MQ=255)

                 tATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgc                                                                           >  1:3398555/1‑91 (MQ=255)

                 tATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgc                                                                           <  2:1729894/91‑1 (MQ=255)

                          gCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAg                                                                  >  2:1814750/1‑91 (MQ=255)

                            cAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGcc                                                                <  1:568052/91‑1 (MQ=255)

                             aaaTAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCa                                                               <  2:1125069/91‑1 (MQ=255)

                             aaaTAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCa                                                               <  1:124521/91‑1 (MQ=255)

                                 aatTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTa                                                           <  2:1766898/91‑1 (MQ=255)

                                 aagtCACTTTAAGCTCGAGCGCCTGAATGAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTATCCACTTa                                                           <  2:2742805/88‑1 (MQ=255)

                                   ttCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAAc                                                         <  2:90590/91‑1 (MQ=255)

                                      aatataaaagatacctcctgaaataaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACAtt                                                      >  1:3187353‑M2/53‑91 (MQ=255)

                                      aCTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACAtt                                                      <  1:3040470/91‑1 (MQ=255)

                                           aaTCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAtt                                                 <  2:2286354/91‑1 (MQ=255)

                                           aaTCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAtt                                                 <  2:3444753/91‑1 (MQ=255)

                                           aaTCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTACCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAtt                                                 <  2:321696/91‑1 (MQ=255)

                                            aTCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAttt                                                >  1:494854/1‑91 (MQ=255)

                                            aTCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAttt                                                <  1:1165802/91‑1 (MQ=255)

                                               tctACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTa                                             <  2:3609966/91‑1 (MQ=255)

                                               tctACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTa                                             >  2:3799649/1‑91 (MQ=255)

                                                ctACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTAc                                            >  2:288019/1‑91 (MQ=255)

                                                 TACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTAcc                                           <  1:3523029‑M1/91‑1 (MQ=255)

                                                   aCTCCTAAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCAt                                         >  2:474063‑M1/2‑91 (MQ=255)

                                                    ctcctgaaataaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCAtt                                        >  2:3321022‑M2/39‑91 (MQ=255)

                                                       CTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaa                                     <  2:1211731‑M1/91‑1 (MQ=255)

                                                        tgaaataaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaac                                    >  1:1831331‑M2/35‑91 (MQ=255)

                                                        tgaaataaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaac                                    >  1:1213034‑M2/35‑91 (MQ=255)

                                                        TGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTCGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaac                                    <  2:3467319‑M1/91‑1 (MQ=255)

                                                        TGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaac                                    >  1:3001528‑M1/1‑91 (MQ=255)

                                                        TGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaac                                    <  2:2674580‑M1/91‑1 (MQ=255)

                                                        TGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaac                                    <  1:2970249‑M1/91‑1 (MQ=255)

                                                        TGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCCAGCCACTTAACATTTAATTTCTACCATTcaac                                    <  1:3354401‑M1/91‑1 (MQ=255)

                                                         gaaataaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaaca                                   >  1:1752559‑M2/34‑91 (MQ=255)

                                                          AAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaacaa                                  >  1:1417899‑M1/1‑91 (MQ=255)

                                                          AAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaacaa                                  >  2:1152071‑M1/1‑91 (MQ=255)

                                                           AAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACaaa                                 <  1:704888‑M1/91‑1 (MQ=255)

                                                           AAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACaaa                                 <  1:1343759‑M1/91‑1 (MQ=255)

                                                            ataaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACaaaa                                >  1:1908616‑M2/31‑91 (MQ=255)

                                                             taaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAt                               >  1:3723861‑M2/30‑91 (MQ=255)

                                                              aaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAtt                              >  2:2762384‑M2/29‑91 (MQ=255)

                                                              aaCATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAtt                              >  1:3461393/1‑91 (MQ=255)

                                                              aaCATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAtt                              >  1:456111/1‑91 (MQ=255)

                                                              aaCATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAtt                              >  2:259029/1‑91 (MQ=255)

                                                               aCATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAttt                             <  1:628174/91‑1 (MQ=255)

                                                               aCATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAttt                             >  2:301504/1‑91 (MQ=255)

                                                                cATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTa                            >  2:1517557/1‑91 (MQ=255)

                                                                cATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTa                            >  1:1613621/1‑91 (MQ=255)

                                                                cATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCCTTCTAGCCTCTTAACATTTGATCTCTACCATTCAACAAAATTTa                            >  2:819168/1‑91 (MQ=255)

                                                                aaacagaaatgttttttcaggaggtaTCTCTTACATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTCCCACTCAACAAAATTTa                            >  2:23802‑M2/27‑91 (MQ=255)

                                                                 aacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaa                           >  2:3363762‑M2/26‑91 (MQ=255)

                                                                 aTTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaa                           >  1:518319/1‑91 (MQ=255)

                                                                  tttCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaaa                          <  2:1633642/91‑1 (MQ=255)

                                                                   ttCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAat                         >  2:1972854/1‑91 (MQ=255)

                                                                    tCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAata                        >  1:3776601/1‑91 (MQ=255)

                                                                     cTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTACCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAatat                       >  1:3332803/1‑91 (MQ=255)

                                                                      tGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAatata                      >  1:1129536/1‑91 (MQ=255)

                                                                          tttATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGa                  <  1:670146/91‑1 (MQ=255)

                                                                           ttATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGAt                 >  1:192327/1‑91 (MQ=255)

                                                                            tATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATg                >  1:919139/1‑91 (MQ=255)

                                                                              tttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGt              >  1:840410‑M2/13‑91 (MQ=255)

                                                                              tttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGt              <  2:121965‑M2/79‑1 (MQ=255)

                                                                               ttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTc             <  1:3218331‑M2/80‑1 (MQ=255)

                                                                                tcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCa            >  1:2709034‑M2/11‑91 (MQ=255)

                                                                                tcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCa            <  2:2687042‑M2/81‑1 (MQ=255)

                                                                                  aggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCAtt          <  2:2657876‑M2/83‑1 (MQ=255)

                                                                                   ggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCAttt         >  1:2575475‑M2/8‑91 (MQ=255)

                                                                                   ggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCAttt         >  1:28498‑M2/8‑91 (MQ=255)

                                                                                   ggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCAttt         >  1:2217668‑M2/8‑91 (MQ=255)

                                                                                   ggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCAttt         >  2:45892‑M2/8‑91 (MQ=255)

                                                                                      ggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATg      >  2:1905601‑M2/5‑91 (MQ=255)

                                                                                      ggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATg      <  1:1590395‑M2/87‑1 (MQ=255)

                                                                                      ggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATg      >  2:3096970‑M2/5‑91 (MQ=255)

                                                                                         aTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGtt   >  1:137321‑M2/2‑91 (MQ=255)

                                                                                         aTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGtt   >  1:2051957‑M2/2‑91 (MQ=255)

TATGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGTTT  >  USA300TCH1516_ALE/2483036‑2483216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.