BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2489730 =	230 (1.130)	24 (0.140)	14/136	NT	11.6%	intergenic (+79/+74)	tarF_2/USA300HOU_RS12815	Teichoic acid glycerol‑phosphate transferase/putative lipoprotein
*	?	USA300TCH1516_ALE	2489772 =	172 (1.000)	24 (0.140)	14/136	NT	11.6%	intergenic (+121/+32)	tarF_2/USA300HOU_RS12815	Teichoic acid glycerol‑phosphate transferase/putative lipoprotein

Only 100 of 295 total aligned reads displayed.

GTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACA  >  USA300TCH1516_ALE/2489682‑2489861

gTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTCACCGTTTTa                                                                                           >  2:3320941/1‑91 (MQ=255)

 aactaccaacaataatgttaatataactatgatacaagttaaaaaatAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAt                                                                                          >  1:593511‑M1/48‑91 (MQ=255)

  ttAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAACAACGGTAAACCCTAATTCATATTATAGAGATTACCGTTTTAtt                                                                                         >  1:3962188/1‑91 (MQ=255)

  ttAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtt                                                                                         <  2:2785501/91‑1 (MQ=255)

  ttAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtt                                                                                         >  1:3535472/1‑91 (MQ=255)

  ttAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGATTACCGTTTTAtt                                                                                         >  2:1605172/1‑91 (MQ=255)

  actaccaacaataatgttaatataactatgatgcaagttaaaaaatAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtt                                                                                         >  2:134615‑M1/47‑91 (MQ=255)

   tAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAttt                                                                                        >  1:2871173/1‑91 (MQ=255)

   tAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTATACCGTTTTAttt                                                                                        >  2:2904205/1‑91 (MQ=255)

   tAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTATACCGTTTTAttt                                                                                        >  1:500907/1‑91 (MQ=255)

       aGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTa                                                                                    >  1:85247/1‑91 (MQ=255)

          caataatgttaatataactatgatgcaagttaaaaaataaaacggtaaactctataatatgaattagggtttaccgttttttttttttttt                                                                                 >  2:3936473‑M2/81‑87 (MQ=255)

          aaaataAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACt                                                                                 <  1:3512043/88‑1 (MQ=255)

          aCTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATCGAGTTTACCGTTTTATTTTTTAACt                                                                                 >  1:3686556/1‑91 (MQ=255)

           cTATAAAACGTAGACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATATAGTTTACCGTTTTATTTTTTAACtt                                                                                <  1:3314463/91‑1 (MQ=255)

            tataAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTg                                                                               >  2:1871694/1‑91 (MQ=255)

             ataAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGc                                                                              <  1:3807638/91‑1 (MQ=255)

              taAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGca                                                                             <  1:12998/91‑1 (MQ=255)

               aaaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcat                                                                            <  1:2832623/91‑1 (MQ=255)

                aaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                           <  1:2330785/91‑1 (MQ=255)

                aaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                           >  2:356221/1‑91 (MQ=255)

                 aaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatca                                                                          >  1:1989138/1‑91 (MQ=255)

                  aCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTCTAGAGTTTACCGTTTTATTTTTTAACTTGcatcat                                                                         >  1:2784507/1‑91 (MQ=255)

                  aCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatcat                                                                         >  2:2378533/1‑91 (MQ=255)

                  aCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatcat                                                                         >  2:2046336/1‑91 (MQ=255)

                   cGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATa                                                                        >  1:3712562/1‑91 (MQ=255)

                     tAAACTTTGATACCTAAAAATACAAAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGt                                                                      <  2:1859829/91‑1 (MQ=255)

                       aaCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTta                                                                    >  2:1594476/1‑91 (MQ=255)

                         cTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtata                                                                  <  1:2001133/91‑1 (MQ=255)

                           ttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATAtt                                                                >  2:3231764/1‑91 (MQ=255)

                             gATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTaa                                                              <  1:2085958/91‑1 (MQ=255)

                              aTACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAAc                                                             <  1:3724737/91‑1 (MQ=255)

                              aTACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAAc                                                             >  1:2364752/1‑91 (MQ=255)

                               tACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACa                                                            >  1:1052569/1‑91 (MQ=255)

                                aCTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACat                                                           >  1:982731/1‑91 (MQ=255)

                                aCTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACat                                                           >  1:3272479/1‑91 (MQ=255)

                                  tttAAAAAACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACatta                                                         <  2:773096/91‑1 (MQ=255)

                                     aaaaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttg                                                      <  1:51421/91‑1 (MQ=255)

                                     aaaaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttg                                                      <  2:3466148/91‑1 (MQ=255)

                                      aaaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgt                                                     >  2:1016448/1‑91 (MQ=255)

                                       aaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTGCCGTTTTATTTTTTAACGTGCAGCATAGTTATATTAACATTAttgtt                                                    <  1:2957380/91‑1 (MQ=255)

                                       aaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgtt                                                    <  1:2203530/91‑1 (MQ=255)

                                        aTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgttg                                                   <  2:3014045/91‑1 (MQ=255)

                                        aTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgttg                                                   <  2:1819577/91‑1 (MQ=255)

                                           cGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGtt                                                >  1:1841744/1‑90 (MQ=255)

                                           cGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTa                                                >  1:1222304/1‑91 (MQ=255)

                                           cGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTa                                                <  1:3123434/91‑1 (MQ=255)

                                           cGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTa                                                >  1:2465870/1‑91 (MQ=255)

                                           cGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTa                                                >  2:3339949/1‑91 (MQ=255)

                                           cGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATCTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTa                                                >  2:65246/1‑91 (MQ=255)

                                            gCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAg                                               <  1:1370539/91‑1 (MQ=255)

                                            gCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAg                                               >  1:1572055/1‑91 (MQ=255)

                                             cAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGt                                              <  2:2094061/91‑1 (MQ=255)

                                                AAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTg                                           >  2:2651385‑M1/1‑91 (MQ=255)

                                                AAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTg                                           >  1:3760877‑M1/1‑91 (MQ=255)

                                                AAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTg                                           >  1:2921557‑M1/1‑91 (MQ=255)

                                                  AACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGa                                         <  1:192690‑M1/91‑1 (MQ=255)

                                                   acggtaaactctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGAt                                        >  2:2141518‑M2/40‑91 (MQ=255)

                                                     ggtaaactctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCa                                      >  1:1405991‑M2/38‑91 (MQ=255)

                                                     GGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCa                                      <  2:2234454‑M1/91‑1 (MQ=255)

                                                      gTAAATCCTAATTCAGATTATAGAGTGTACCGTTTTATTTTTTAACTTGCAGCATAGTTATATTACCATTATTGTTGGTAGGTTGGATCAg                                     <  2:3644873/91‑1 (MQ=255)

                                                       taaactctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                    >  1:732757‑M2/36‑91 (MQ=255)

                                                       TAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                    <  2:3910270‑M1/91‑1 (MQ=255)

                                                       TAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                    >  2:1791207‑M1/1‑91 (MQ=255)

                                                       TAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                    <  1:2392911‑M1/91‑1 (MQ=255)

                                                       TAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                    <  2:378678‑M1/91‑1 (MQ=255)

                                                       TAAACCCTAATTCATAATATAGAGTTTACCGTTTTATTCTTTAACTTGCATCATAGTTATATTAACATTCTTGTTGGTAGTTTGGATCAGt                                    <  2:1807316‑M1/91‑1 (MQ=255)

                                                         AACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTaa                                  >  2:3168675‑M1/1‑91 (MQ=255)

                                                         AACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTaa                                  >  2:1497762‑M1/1‑91 (MQ=255)

                                                          actctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAAc                                 >  1:769394‑M2/33‑91 (MQ=255)

                                                          ACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAAc                                 >  1:2553894‑M1/1‑91 (MQ=255)

                                                           CCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAAcc                                <  2:1644211‑M1/91‑1 (MQ=255)

                                                           CCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAAcc                                <  1:2580196‑M1/91‑1 (MQ=255)

                                                            tctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCa                               >  1:3211292‑M2/31‑91 (MQ=255)

                                                            ccTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCa                               >  2:3416893/1‑91 (MQ=255)

                                                            ccTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCa                               <  1:2689569/91‑1 (MQ=255)

                                                            ccTAATTCATATTATAGAGTTTACCGTGTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCa                               <  2:1628571/91‑1 (MQ=255)

                                                             ctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAt                              >  1:1219808‑M2/30‑91 (MQ=255)

                                                             cTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAt                              >  2:254575/1‑91 (MQ=255)

                                                              tataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAtt                             >  1:3780792‑M2/29‑91 (MQ=255)

                                                              tAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAtt                             <  1:1447142/91‑1 (MQ=255)

                                                                aTTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGc                           <  1:3204917/91‑1 (MQ=255)

                                                                 ttCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCt                          <  2:901722/91‑1 (MQ=255)

                                                                    atatTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGt                       >  2:1927192/1‑91 (MQ=255)

                                                                    atatTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGt                       <  2:847808/91‑1 (MQ=255)

                                                                    atatTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGt                       >  2:490906/1‑91 (MQ=255)

                                                                     tattatAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTc                      <  1:2709855/91‑1 (MQ=255)

                                                                     tattatAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTGATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTc                      >  2:3045723/1‑91 (MQ=255)

                                                                      attatAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTcc                     <  1:3936297/91‑1 (MQ=255)

                                                                       ttatAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCa                    >  1:1866130/1‑91 (MQ=255)

                                                                         ataGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGt                  >  1:1036269/1‑91 (MQ=255)

                                                                          taGAGTTTACCGTTCTATTTTTTCACTTGCATCATAGTTATATTAACATTATTGATGGTAGTTTGGATCAGTTACCATTGCTTGTCCAgca                 >  2:3571852/1‑89 (MQ=255)

                                                                            gagTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGtata               >  1:1540067/1‑91 (MQ=255)

                                                                              gtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAAt             <  2:93797‑M2/79‑1 (MQ=255)

                                                                                ttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCa           >  1:1783732‑M2/11‑91 (MQ=255)

                                                                                ttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCa           >  2:2325852‑M2/11‑91 (MQ=255)

                                                                                ttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCa           >  1:1829802‑M2/11‑91 (MQ=255)

                                                                                 taccgttttATTTTTTAACTTGCATCATAGTTATATTAACAGTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCaa          >  1:3427804‑M2/10‑91 (MQ=255)

                                                                                  accgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAAc         >  1:2790217‑M2/9‑91 (MQ=255)

                                                                                      ttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGtt     <  2:2485623‑M2/87‑1 (MQ=255)

GTTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTACA  >  USA300TCH1516_ALE/2489682‑2489861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.