BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2537754 =	219 (1.080)	24 (0.140)	10/138	NT	12.3%	intergenic (+108/+46)	USA300TCH1516_02423/gpmA_2	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
*	?	USA300TCH1516_ALE	2537797 =	154 (0.880)	24 (0.140)	10/138	NT	12.3%	intergenic (+151/+3)	USA300TCH1516_02423/gpmA_2	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase

Only 100 of 277 total aligned reads displayed.

ATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATA  >  USA300TCH1516_ALE/2537707‑2537887

atatAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCttt                                                                                            >  1:2347949/1‑91 (MQ=255)

 tataAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCtttt                                                                                           <  1:2141179/91‑1 (MQ=255)

  ataAACTCTATACTTAACTATCTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCttttt                                                                                          >  1:1504521/1‑91 (MQ=255)

   taAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCtttttt                                                                                         >  1:2899283/1‑91 (MQ=255)

    aaaCTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCttttttt                                                                                        <  1:59442/91‑1 (MQ=255)

     aaCTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTta                                                                                       >  1:319759/1‑91 (MQ=255)

     aaCTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTta                                                                                       >  1:20758/1‑91 (MQ=255)

      aCTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTtat                                                                                      >  1:1830248/1‑91 (MQ=255)

        tctATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATaa                                                                                    <  1:2289102/91‑1 (MQ=255)

        tctATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATaa                                                                                    <  1:1923555/91‑1 (MQ=255)

         ctATACTTAACTATTTCCTTACATTACTTCACATATTAAAGAGCTGAATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAag                                                                                   >  1:3149333/1‑91 (MQ=255)

          tataCTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagt                                                                                  <  1:2957444/91‑1 (MQ=255)

            taCTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagtag                                                                                >  1:2674497/1‑91 (MQ=255)

            taCTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagtag                                                                                <  2:3240991/91‑1 (MQ=255)

             aCTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagtagt                                                                               >  2:3961369/1‑91 (MQ=255)

                tAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTAtt                                                                            <  2:1319947/91‑1 (MQ=255)

                 aaCTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTAttt                                                                           <  2:1750820/91‑1 (MQ=255)

                 aaCTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTAttt                                                                           >  1:899760/1‑91 (MQ=255)

                  aCTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTa                                                                          >  2:2824723/1‑91 (MQ=255)

                    tATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATc                                                                        <  1:2835562/91‑1 (MQ=255)

                     aTTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCt                                                                       >  1:480892/1‑91 (MQ=255)

                       ttCCTTACATTACTTCTCATATTTATGAGCTGCATATTCACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCtat                                                                     <  2:1116764/91‑1 (MQ=255)

                       ttCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCtat                                                                     <  2:934291/91‑1 (MQ=255)

                       ttCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCtat                                                                     <  2:2269682/91‑1 (MQ=255)

                       ttCCTTACATTACTTCACATATTTAAGAGCGGCATATACACGCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCtat                                                                     <  2:1608658/91‑1 (MQ=255)

                        tCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCtata                                                                    >  1:3358527/1‑91 (MQ=255)

                         agataaatactacttataaaaaaagagctgcatgtacacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATaa                                                                   >  1:3060322‑M2/66‑91 (MQ=255)

                           ttACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCCTGTGTACATGCAGCTCTTTTTTCATAAGTAGTATTTATCTATAACt                                                                 <  1:3131781/91‑1 (MQ=255)

                             aCATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTc                                                               <  2:1939598/91‑1 (MQ=255)

                             aCATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTc                                                               <  2:2571568/91‑1 (MQ=255)

                             aCATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTc                                                               >  2:3321965/1‑91 (MQ=255)

                             aCATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTc                                                               <  2:881115/91‑1 (MQ=255)

                             aCAATACTTCACATATTTAACAGCTTCATATACACTCACTACTTGTGTACATACAGCTCTTTTTTTATAAGTAGTATTTATCAGTAACTTc                                                               >  2:3505929/1‑91 (MQ=255)

                                 tACTTCACATATTTACGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTaaa                                                           <  1:3566155/91‑1 (MQ=255)

                                  aCTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAat                                                          <  2:3175939/91‑1 (MQ=255)

                                   cTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAatc                                                         >  1:864740/1‑91 (MQ=255)

                                    ttCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAatca                                                        >  1:1423038/1‑91 (MQ=255)

                                     tCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGCATTTATCTATAACTTCTAAatcat                                                       >  2:3672361/1‑91 (MQ=255)

                                        caTATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCg                                                    >  1:3636028/1‑91 (MQ=255)

                                         atatTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGt                                                   >  1:3073236/1‑91 (MQ=255)

                                          tatTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGtt                                                  >  1:2310411/1‑91 (MQ=255)

                                             ttAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTCAt                                               >  2:3063032/1‑91 (MQ=255)

                                              tAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAAtt                                              <  2:272764/91‑1 (MQ=255)

                                               AAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTc                                             <  2:325908‑M1/91‑1 (MQ=255)

                                                AGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCa                                            <  2:651059‑M1/91‑1 (MQ=255)

                                                AGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCa                                            <  2:570566‑M1/91‑1 (MQ=255)

                                                AGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCa                                            >  2:1718127‑M1/1‑91 (MQ=255)

                                                    ctgcatgtacacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATaaa                                        >  1:796607‑M2/39‑91 (MQ=255)

                                                    CTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATaaa                                        <  2:3547767‑M1/91‑1 (MQ=255)

                                                    CTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATaaa                                        >  2:848242‑M1/1‑91 (MQ=255)

                                                     tgcatgtacacaaggagtgagtgtatatgcagctcttTTTTTATAAGCAGTATTTATCTATAACTTCTAAATCATCCATTAATTCATAAAc                                       >  1:3955047‑M2/38‑91 (MQ=255)

                                                     tgcatgtacacaaggagtgagtgtatatgcagcccttTTTTTATAAGTAGTATTTACCTATAACTTCTAAATCATCCGTTAATTCATAAAc                                       >  2:248799‑M2/38‑91 (MQ=255)

                                                       CATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACaa                                     >  1:1590389‑M1/1‑91 (MQ=255)

                                                        ATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAg                                    >  2:265373‑M1/1‑91 (MQ=255)

                                                         tgtacacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGc                                   >  2:2991117‑M2/34‑91 (MQ=255)

                                                           tacacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCgg                                 >  1:154246‑M2/32‑91 (MQ=255)

                                                            acacTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGt                                <  2:2347973/91‑1 (MQ=255)

                                                             cactcactCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTg                               >  2:1050305/1‑91 (MQ=255)

                                                             cactcactCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTg                               >  1:1586384/1‑91 (MQ=255)

                                                             cacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTg                               >  2:2851908‑M2/30‑91 (MQ=255)

                                                             cacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTg                               >  2:3631431‑M2/30‑91 (MQ=255)

                                                             cacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTg                               >  1:1244427‑M2/30‑91 (MQ=255)

                                                             cacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTg                               >  1:1178792‑M2/30‑91 (MQ=255)

                                                               ctcactcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCa                             >  1:976962/1‑91 (MQ=255)

                                                                 cactcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCAcc                           <  1:2041068/91‑1 (MQ=255)

                                                                 cactcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCAcc                           <  2:2106184/91‑1 (MQ=255)

                                                                   ctcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTg                         <  1:3895036/91‑1 (MQ=255)

                                                                   ctcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTg                         >  1:2409888/1‑91 (MQ=255)

                                                                   ctcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTg                         >  1:697042/1‑91 (MQ=255)

                                                                   ctcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTg                         <  1:2545838/91‑1 (MQ=255)

                                                                    tcCTTGTGTACATGCAGCTCTTTTTTTATTTTTATTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGt                        >  2:2501775/1‑91 (MQ=255)

                                                                    tcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAACCACGCGGTGCACCTGt                        >  2:3591055/1‑91 (MQ=255)

                                                                    tcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGt                        >  1:3285872/1‑91 (MQ=255)

                                                                     ccTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGtt                       >  1:1349640/1‑91 (MQ=255)

                                                                     ccTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGtt                       >  2:1550767/1‑91 (MQ=255)

                                                                      cTTGTGTACGTGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGttt                      <  1:3789570/91‑1 (MQ=255)

                                                                       ttGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGtttt                     >  2:2050630/1‑91 (MQ=255)

                                                                        tgtgTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTa                    <  1:2854383/91‑1 (MQ=255)

                                                                        tgtgTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTa                    >  1:1428953/1‑91 (MQ=255)

                                                                         gtgtACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTaa                   >  1:1690022/1‑91 (MQ=255)

                                                                         gtgtACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTaa                   >  1:675941/1‑91 (MQ=255)

                                                                             aCATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTc               <  2:2064759/91‑1 (MQ=255)

                                                                             aCATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTc               >  1:1773464/1‑91 (MQ=255)

                                                                              cATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCa              <  1:288299/91‑1 (MQ=255)

                                                                               atgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTACTTTCAt             >  2:3491106‑M2/12‑91 (MQ=255)

                                                                               atgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAt             <  2:3139353‑M2/80‑1 (MQ=255)

                                                                                 gcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaa           >  1:3253716‑M2/10‑91 (MQ=255)

                                                                                  cagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaat          >  2:1444227‑M2/9‑91 (MQ=255)

                                                                                   agctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaatt         <  1:620108‑M2/84‑1 (MQ=255)

                                                                                   agctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaatt         <  2:2534829‑M2/84‑1 (MQ=255)

                                                                                    gctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaatta        >  1:1158510‑M2/7‑91 (MQ=255)

                                                                                    gctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaatta        >  2:42415‑M2/7‑91 (MQ=255)

                                                                                    gctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaatta        <  2:1815044‑M2/85‑1 (MQ=255)

                                                                                      tcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaattaat      <  2:3102079‑M2/87‑1 (MQ=255)

                                                                                       cttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATg     <  2:2664942‑M2/88‑1 (MQ=255)

                                                                                        ttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGa    >  1:526657‑M2/3‑91 (MQ=255)

                                                                                          tttttATAAGTAGTATTTATCTATAACTTCTAAGTCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGata  <  1:3515869/91‑1 (MQ=255)

                                                                                          tttttATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGata  <  2:3739898/91‑1 (MQ=255)

                                                                                          tttttATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGata  >  2:1452701/1‑91 (MQ=255)

                                                                                          tttttATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGata  >  1:2443013/1‑91 (MQ=255)

ATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATA  >  USA300TCH1516_ALE/2537707‑2537887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.