| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2580557 = | 168 (0.820) | 85 (0.450) | 13/148 | NT | 37.1% | intergenic (+192/‑416) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase |
| ? | USA300TCH1516_ALE | 2580587 = | 133 (0.710) | intergenic (+222/‑386) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase | |||||
Only 100 of 278 total aligned reads displayed.
GCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTT > USA300TCH1516_ALE/2580497‑2580677 | aacttgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCGa > 1:894253‑M1/61‑91 (MQ=255) cTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGAt < 1:1063712/91‑1 (MQ=33) tGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGAtt < 1:1984557/91‑1 (MQ=33) cttgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCGAtt > 1:848105‑M1/59‑91 (MQ=255) cttgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCGAtt > 2:1353287‑M1/59‑91 (MQ=255) cttgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCGAtt > 1:1629282‑M1/59‑91 (MQ=255) ttgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCGATTc > 1:1799191‑M1/58‑91 (MQ=255) gggACCTAAATCAATGTTCTATGCTCTACGAAGTTCTATAGGCAGTAGTTGACTGAGCGAAAATGCGCTTGTAACAAGCTTTTTTAGATTc > 2:1605302/1‑91 (MQ=11) gggACATAAATCAATGTTCTATGCTCTACAAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTATTCGATTc > 2:3444234/1‑91 (MQ=16) ggACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCt > 2:2612078/1‑91 (MQ=33) ggACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATGCt > 2:1467503/1‑91 (MQ=18) gACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTa > 2:1753568/1‑91 (MQ=34) cATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGt > 1:3895268/1‑91 (MQ=34) attgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGt > 1:2761489‑M1/54‑91 (MQ=255) aTCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAggg < 1:1806897/91‑1 (MQ=34) aTCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAggg > 1:751742/1‑91 (MQ=34) tGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGcccc < 1:234947/91‑1 (MQ=34) cTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAaca > 1:2177570/1‑91 (MQ=34) tATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAacac < 1:2082148/91‑1 (MQ=34) aTGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAAcaca < 2:2683083/91‑1 (MQ=34) aTGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAAcaca < 1:3119947/91‑1 (MQ=34) aTGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAAcaca < 1:2397076/91‑1 (MQ=34) aTGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAAcaca > 1:954127/1‑91 (MQ=34) tcgaaattctctgttttggggcccctgactagaatTGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACaga > 1:3173423‑M1/36‑91 (MQ=255) ctctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACagag > 1:1070456/1‑91 (MQ=34) tctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACagaaa < 2:1911831/91‑3 (MQ=18) tctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAgaga > 2:1177763/1‑91 (MQ=34) tctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATCCGCTTGCAACAAGCTTTTTTCGATTCCAGTCAGGGGCCCCAACACAgaga > 2:3670327/1‑91 (MQ=255) ctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGaa > 2:3224364/1‑91 (MQ=34) aCGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAAtt < 2:2817023/91‑1 (MQ=33) cGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAAttt < 2:2402747/91‑1 (MQ=33) aGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTctt < 1:3485744/91‑3 (MQ=21) aGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGa > 1:3566010/1‑91 (MQ=34) ttATATTGGGAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaa < 1:3783858/91‑1 (MQ=18) ttATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaa > 1:2276762/1‑91 (MQ=34) ttATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaa < 2:3697492/91‑1 (MQ=34) tataTTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTTGTTTTTTGTCAGGGGCCCCAACCCAGAGAATTTCGaaaa > 2:2841344/1‑91 (MQ=11) tataTTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaaa < 1:45415/91‑1 (MQ=34) tataTTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaaaa < 1:2965925/91‑1 (MQ=34) atatTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAg > 1:1713458/1‑91 (MQ=34) atatTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAg > 2:335987/1‑91 (MQ=34) atTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaa < 1:368340/91‑1 (MQ=34) ggCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAAtt > 1:1250014/1‑91 (MQ=33) gCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTc < 2:594978/91‑1 (MQ=33) cAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCt < 1:3224074/91‑1 (MQ=34) gtagtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTAc < 1:1217967/91‑1 (MQ=34) tagtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACa > 1:1666127/1‑91 (MQ=34) actagaatcgaaaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAt > 1:1383445‑M2/39‑91 (MQ=255) aCTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAt > 1:1779894/1‑91 (MQ=34) gAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCa > 2:3158001/1‑91 (MQ=34) aattgaaaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACATAGAGAATTTCGCAAAGAAATTCTACAGGCAATGCGAg > 2:77812‑M2/34‑91 (MQ=255) aatcgaaaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAg > 2:604876‑M2/34‑91 (MQ=255) aatcgaaaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAg > 1:848217‑M2/34‑91 (MQ=255) attgaaaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCaa > 1:2040302‑M2/33‑91 (MQ=255) tcgaaaaaagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAg > 1:694409‑M2/32‑91 (MQ=255) tcgaaaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGtt > 1:894895‑M2/32‑91 (MQ=255) aCGAAAATGCGCGTGTAACTAGCTGTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATGTCGAAAAGAAAGTCTACAGGCAATGCAAg < 2:489438/91‑1 (MQ=11) CGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGt < 1:2826315‑M1/91‑1 (MQ=255) CGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGt < 2:3839320‑M1/91‑1 (MQ=255) gaaaaaagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCCACACAGAGAATTTCGAAAAGAAATTCTACCGGCAATGCAAGtt > 1:3958248‑M2/30‑91 (MQ=255) gaaaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGtt > 1:573090‑M2/30‑91 (MQ=255) gaaaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGtt > 1:3210271‑M2/30‑91 (MQ=255) aaaaaagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTg > 1:2419478‑M2/29‑91 (MQ=255) aaaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTg > 1:2189833‑M2/29‑91 (MQ=255) aaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGCGAATTTCGAAAAGAAATTCTACAGGCAATGCGCGTTgg > 1:3328466‑M2/28‑91 (MQ=255) aaaaagcttattacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgg > 2:1519741‑M2/28‑91 (MQ=255) aaaagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTggg > 1:1568935‑M2/27‑91 (MQ=255) aaaagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTggg > 2:1693814‑M2/27‑91 (MQ=255) aaaagcttattacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg > 1:2996054‑M2/27‑91 (MQ=255) aaagcttgttgcaagcgcattttcaACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgggg > 1:642629‑M2/26‑91 (MQ=255) aaagcttgttgcaagcgcattttcaACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgggg > 1:2669439‑M2/26‑91 (MQ=255) aaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgggg > 1:2650069‑M2/26‑91 (MQ=255) aaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgggg > 2:2253492‑M2/26‑91 (MQ=255) aaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg > 2:986688‑M2/26‑91 (MQ=255) ATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg < 1:2607321‑M1/91‑1 (MQ=255) ATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg > 1:78956‑M1/1‑91 (MQ=255) ATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg > 1:477423‑M1/1‑91 (MQ=255) aagcttgttgcaagcgcattttcaACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGt > 1:876611‑M2/25‑91 (MQ=255) aagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGt > 1:2522516‑M2/25‑91 (MQ=255) aagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGt > 1:3202210‑M2/25‑91 (MQ=255) aagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTtgggga > 2:2955184‑M2/25‑90 (MQ=255) aagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTtgggga > 1:2116351‑M2/25‑90 (MQ=255) gcgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTg > 2:2974993/1‑91 (MQ=35) gcgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTg < 1:2699650/91‑1 (MQ=37) gcgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTg < 2:1265605/91‑1 (MQ=37) agcttgttgcaagcgcattttcaACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTg > 2:1314300‑M2/24‑91 (MQ=255) agcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGttggggat > 2:2739820‑M2/24‑89 (MQ=255) cgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTgg > 1:1938069/1‑91 (MQ=37) cgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTgg < 2:3493262/91‑1 (MQ=38) cTTGTAACAAGCTTTTTTCGATTTTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGga > 2:265854/1‑91 (MQ=255) tgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGgac > 2:2183162‑M2/20‑91 (MQ=255) tGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGgacg > 1:1344980/1‑91 (MQ=255) tGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATGTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGgacg < 2:149718/91‑1 (MQ=255) tAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGgacgac < 1:3450294/91‑1 (MQ=255) gCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATaaa < 1:3353770/91‑1 (MQ=255) ttttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGa < 2:3065899/91‑1 (MQ=255) tttttCGCTGCTAGTCAGGGGCCACAACACAGAGAATGTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaa < 2:541377/91‑1 (MQ=18) tttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaa < 2:3374406/91‑1 (MQ=255) tttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaa < 1:3830902/91‑1 (MQ=255) cgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACt > 2:946734‑M2/3‑91 (MQ=255) | GCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTT > USA300TCH1516_ALE/2580497‑2580677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |