BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2588434 =	177 (0.870)	8 (0.040)	7/142	NT	5.2%	intergenic (+17/+151)	yehR/gltB_2	putative lipoprotein YehR/Glutamate synthase [NADPH] large chain
*	?	USA300TCH1516_ALE	2588483 =	137 (0.760)	8 (0.040)	7/142	NT	5.2%	intergenic (+66/+102)	yehR/gltB_2	putative lipoprotein YehR/Glutamate synthase [NADPH] large chain

Only 100 of 215 total aligned reads displayed.

AAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCC  >  USA300TCH1516_ALE/2588393‑2588572

caaagaTAAAATGGACGACAAATAGTTTATAACTTATAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCt                                                                                           <  2:3910028/90‑1 (MQ=255)

aaaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCt                                                                                           >  1:1605993/1‑91 (MQ=255)

aaaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCt                                                                                           <  1:2593714/91‑1 (MQ=255)

aaaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCt                                                                                           <  1:2005363/91‑1 (MQ=255)

aaaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCt                                                                                           <  2:2564436/91‑1 (MQ=255)

 aaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCtt                                                                                          <  2:3239966/91‑1 (MQ=255)

 aaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCtt                                                                                          >  1:2550037/1‑91 (MQ=255)

   agaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTa                                                                                        <  1:521047/91‑1 (MQ=255)

    gaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTaa                                                                                       <  2:863929/91‑1 (MQ=255)

      tAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACGAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAata                                                                                     <  2:1431009/91‑1 (MQ=255)

      gaaaaTGGACGACAAATCCTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAata                                                                                     <  2:1073984/90‑1 (MQ=255)

       aaaaTGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAatat                                                                                    <  1:263195/91‑1 (MQ=255)

       aaaaTGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAatat                                                                                    >  1:980941/1‑91 (MQ=255)

        aaaTGGACGACAAATAGTTTATAACTTAAAAATGCCCTCCGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATAtt                                                                                   >  2:3190191/1‑91 (MQ=255)

        aaaTGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATAtt                                                                                   >  1:1471475/1‑91 (MQ=255)

         aaTGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATAttt                                                                                  <  1:2801045/91‑1 (MQ=255)

              acgacAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGt                                                                             >  1:3380289/1‑91 (MQ=255)

               cgacAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGtt                                                                            >  2:3171277/1‑91 (MQ=255)

                gacAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTc                                                                           >  1:2732958/1‑91 (MQ=255)

                 acAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCt                                                                          <  1:1890962/91‑1 (MQ=255)

                  cAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCtt                                                                         <  1:2991086/91‑1 (MQ=255)

                  cAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCtt                                                                         >  2:2211190/1‑91 (MQ=255)

                  cAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCtt                                                                         >  1:2825823/1‑91 (MQ=255)

                  cAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCtt                                                                         <  2:1737322/91‑1 (MQ=255)

                  cAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGGTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCtt                                                                         >  2:3094428/1‑91 (MQ=255)

                   aaaTAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTtg                                                                        <  1:1008759/91‑1 (MQ=255)

                   aaaTAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTtg                                                                        <  1:1085385/91‑1 (MQ=255)

                   aaaTAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGCTCTtg                                                                        >  2:2939964/1‑91 (MQ=255)

                    aaTAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTtgt                                                                       <  2:1357034/91‑1 (MQ=255)

                     aTAGTTTATAACTTAAAAATGCCCTCAGATAAGACGAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTtgtg                                                                      <  1:3284858/91‑1 (MQ=255)

                       aGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTTATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTtgtgtg                                                                    <  1:3426460/91‑1 (MQ=255)

                       aGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTtgtgtg                                                                    <  1:2098266/91‑1 (MQ=255)

                        gTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATACTTGAAGTTCTTGTGTGa                                                                   >  2:1451932/1‑91 (MQ=255)

                         tttATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGAc                                                                  >  2:931916/1‑91 (MQ=255)

                         tttATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGAc                                                                  >  1:3232960/1‑91 (MQ=255)

                          ttATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGAcc                                                                 <  1:729977/91‑1 (MQ=255)

                          ttATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGAcc                                                                 <  1:308098/91‑1 (MQ=255)

                             taACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGc                                                              <  2:53624/91‑1 (MQ=255)

                              aaCTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCa                                                             >  2:1198424/1‑91 (MQ=255)

                              aaCTTAAAAATGCCCTCAGATAAGACCAAGGTTACAAACCTTAATTCATATTCTGAGTGCTTTAATATTTGAAGTTCTTGTGTGACCAGCa                                                             >  1:3514943/1‑91 (MQ=255)

                               aCTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCAt                                                            <  1:2201284/91‑1 (MQ=255)

                                cTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATc                                                           <  2:3489278/91‑1 (MQ=255)

                                  tAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCa                                                         >  2:3353467/1‑91 (MQ=255)

                                       aTGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCactact                                                    <  2:2237684/91‑1 (MQ=255)

                                         GCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATCTTTGAAGTTCTTGTGTGACCAGCATCCACTACTaa                                                  <  2:1210022‑M1/91‑1 (MQ=255)

                                         GCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTaa                                                  <  1:986305‑M1/91‑1 (MQ=255)

                                           CCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAata                                                >  2:2174127‑M1/1‑91 (MQ=255)

                                              CAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATaa                                             >  2:1853959‑M1/1‑91 (MQ=255)

                                              CAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATaa                                             >  2:834365‑M1/1‑91 (MQ=255)

                                              CAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATaa                                             >  2:1671717‑M1/1‑91 (MQ=255)

                                               agaatatgaattaaggtttgtaaccttagtcttatcagagggaTTTAATATATGAAGTTCTTATATGACCAGCATACACAACTTACATaaa                                            >  2:458530‑M2/44‑91 (MQ=255)

                                               AGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATaaa                                            <  2:395808‑M1/91‑1 (MQ=255)

                                                gaatatgaattaaggtttgtaaccttagtcgtatctgagggcTTTAATCTTTGAAGTTCTTGTGCGACCAGCATCGACTactactatcaca                                           >  2:2611177‑M2/43‑87 (MQ=255)

                                                GATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATaaaa                                           <  2:290822‑M1/91‑1 (MQ=255)

                                                GATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATaaaa                                           >  1:2428507‑M1/1‑91 (MQ=255)

                                                  atatgaattaaggtttgtaaccttagtcttatctgagggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAatt                                         >  1:3860738‑M2/41‑91 (MQ=255)

                                                   aaGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAatta                                        >  2:573914/1‑91 (MQ=255)

                                                    atgaattaaggtttgtaaccttagtcttatctgagggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAattat                                       >  2:1619937‑M2/39‑91 (MQ=255)

                                                    aGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAattct                                       >  2:2850497/1‑89 (MQ=255)

                                                    aGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAattat                                       >  1:1360021/1‑91 (MQ=255)

                                                      gcTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTAttt                                     >  2:1259104/2‑91 (MQ=255)

                                                      aCTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTAttt                                     >  2:2055843/1‑91 (MQ=255)

                                                       cTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTg                                    <  1:858888/91‑1 (MQ=255)

                                                         aaGGTTACAAACCTTGATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGAACAGCATCCACTACTAATATAAAATTATTTGCa                                  >  1:3369706/1‑91 (MQ=255)

                                                         aaGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCa                                  >  1:1782955/1‑91 (MQ=255)

                                                          aGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAg                                 <  1:2406405/91‑1 (MQ=255)

                                                          aGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAg                                 >  1:227587/1‑91 (MQ=255)

                                                            gTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTa                               >  2:1066880/1‑91 (MQ=255)

                                                            gTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTa                               <  2:2783408/91‑1 (MQ=255)

                                                               tgtaaCCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACg                            >  1:3463354/4‑91 (MQ=255)

                                                               tgtaaCCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACg                            >  2:302124/4‑91 (MQ=255)

                                                               aCAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACg                            <  1:3778665/91‑1 (MQ=255)

                                                                cAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGc                           <  1:1219802/91‑1 (MQ=255)

                                                                cAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGc                           <  2:3229391/91‑1 (MQ=255)

                                                                 aaaCCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCt                          <  2:731164/91‑1 (MQ=255)

                                                                 aaaCCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCt                          >  2:3025954/1‑91 (MQ=255)

                                                                 aaaCCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCt                          >  2:3027244/1‑91 (MQ=255)

                                                                 aaaCCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCt                          <  1:2479200/91‑1 (MQ=255)

                                                                  aaCCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTa                         >  1:3724786/1‑91 (MQ=255)

                                                                    ccTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTaaa                       >  1:3031549/1‑91 (MQ=255)

                                                                     cTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTaaaa                      >  2:3719645/1‑91 (MQ=255)

                                                                      ttAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAAt                     <  2:2408055/91‑1 (MQ=255)

                                                                          ttCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgc                 >  2:2635225/1‑91 (MQ=255)

                                                                          ttCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgc                 >  1:3142349/1‑91 (MQ=255)

                                                                          ttCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgc                 <  2:2352086/91‑1 (MQ=255)

                                                                            cATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgctg               >  2:2751137/1‑91 (MQ=255)

                                                                              tatTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgctgct             <  2:759032/91‑1 (MQ=255)

                                                                                ttCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCttt           <  2:1416410/91‑1 (MQ=255)

                                                                                ttCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCttt           <  2:2439948/91‑1 (MQ=255)

                                                                                  ctgagggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCa         >  2:1803030‑M2/9‑91 (MQ=255)

                                                                                   tgagggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCaa        >  2:3579133‑M2/8‑91 (MQ=255)

                                                                                    gagggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAAt       <  1:3935267‑M2/85‑1 (MQ=255)

                                                                                     agggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAAtt      <  1:43851‑M2/86‑1 (MQ=255)

                                                                                       ggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTc    >  2:1881905‑M2/4‑91 (MQ=255)

                                                                                       ggcTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTc    <  1:960993‑M2/88‑1 (MQ=255)

                                                                                       ggcTTTAATATTTGAAGTGCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTc    <  2:1787207‑M2/88‑1 (MQ=255)

                                                                                         cTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTccc  <  1:2335551‑M2/90‑1 (MQ=255)

                                                                                         cTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTccc  <  1:1191557‑M2/90‑1 (MQ=255)

                                                                                         cTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTccc  <  2:873185‑M2/90‑1 (MQ=255)

                                                                                         cTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTccc  <  2:2017520‑M2/90‑1 (MQ=255)

AAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCC  >  USA300TCH1516_ALE/2588393‑2588572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.