BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2622923 =	176 (0.860)	14 (0.080)	8/142	NT	8.7%	intergenic (‑253/+131)	USA300HOU_RS13520/USA300TCH1516_02501	hypothetical protein/Putative surface protein
*	?	USA300TCH1516_ALE	2622970 =	137 (0.760)	14 (0.080)	8/142	NT	8.7%	intergenic (‑300/+84)	USA300HOU_RS13520/USA300TCH1516_02501	hypothetical protein/Putative surface protein

Only 100 of 220 total aligned reads displayed.

TAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATTATTTTAATTC  >  USA300TCH1516_ALE/2622880‑2623060

tAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGtata                                                                                            <  1:300789/91‑1 (MQ=255)

   atatGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCa                                                                                         >  2:2674553/1‑91 (MQ=255)

   atatGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCa                                                                                         <  2:3877725/91‑1 (MQ=255)

     atGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCATAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCAtt                                                                                       >  1:3957474/1‑91 (MQ=255)

       gAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATtct                                                                                     >  1:2363493/1‑91 (MQ=255)

         aaaTATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTGAGATCTTTCAATCCAACTTTCAGGGTGAATATCATTAtca                                                                                   >  2:1823922/1‑91 (MQ=255)

          aaTATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCtcat                                                                                  >  2:1118814/1‑91 (MQ=255)

          aaTATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCtcat                                                                                  >  2:3340619/1‑91 (MQ=255)

            tattatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCtcatca                                                                                >  1:1762824/1‑91 (MQ=255)

            tattatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCtcatca                                                                                <  1:1898236/91‑1 (MQ=255)

              ttatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCata                                                                              <  2:2648873/91‑1 (MQ=255)

               tatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCatat                                                                             <  2:2164936/91‑1 (MQ=255)

               tatCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCatat                                                                             >  2:734736/1‑91 (MQ=255)

                 tCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTc                                                                           >  2:1264573/1‑91 (MQ=255)

                   aaaaaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGCCTGTATATCACTCTCATCATATTCTa                                                                         >  2:3422980/1‑91 (MQ=255)

                    aaaaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGTGTGTATATCATTCTCATCATATTCTAg                                                                        <  2:42859/91‑1 (MQ=255)

                    aaaaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAg                                                                        <  1:37722/91‑1 (MQ=255)

                     aaaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAgg                                                                       <  1:664570/91‑1 (MQ=255)

                      aaaaTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgt                                                                      >  1:2327395/1‑91 (MQ=255)

                        agaatatgatgagaatgatatacaccccaaaagttggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGgttg                                                                    >  1:3819726‑M2/67‑91 (MQ=255)

                         aTCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgttgt                                                                   <  1:1277830/91‑1 (MQ=255)

                          tCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGgttgtt                                                                  >  2:3568480/1‑91 (MQ=255)

                            aaaTTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGtttt                                                                >  2:3798961/1‑91 (MQ=255)

                             aaTTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGttttt                                                               >  2:3955094/1‑91 (MQ=255)

                             aaTTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGtgttt                                                               >  1:3187448/1‑91 (MQ=255)

                              aTTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTa                                                              >  1:2631776/1‑91 (MQ=255)

                               tttATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTaa                                                             >  2:1932140/1‑91 (MQ=255)

                                 tataACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACa                                                           <  2:2854666/91‑1 (MQ=255)

                                   taACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACaaa                                                         >  1:1173526/1‑91 (MQ=255)

                                    taacaaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAAc                                                        <  1:3375113/87‑1 (MQ=255)

                                     aCAAAAATACACCCCTTGAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACt                                                       <  1:691838/91‑1 (MQ=255)

                                     aCAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACt                                                       >  1:2609206/1‑91 (MQ=255)

                                     aCAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACt                                                       >  1:1836001/1‑91 (MQ=255)

                                     aCAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACt                                                       >  1:1204002/1‑91 (MQ=255)

                                      cAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTa                                                      >  2:3652756/1‑91 (MQ=255)

                                       aaaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTaa                                                     >  1:1643984/1‑91 (MQ=255)

                                       aaaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTaa                                                     >  1:3793323/1‑91 (MQ=255)

                                        aaaaTACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTaaa                                                    <  1:388953/91‑1 (MQ=255)

                                          aaTACTCCCGTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAata                                                  <  1:3785449/91‑1 (MQ=255)

                                              caccccaaaagttggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGt                                              >  2:2123202‑M2/45‑91 (MQ=255)

                                               ACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTg                                             >  1:791770‑M1/1‑91 (MQ=255)

                                               ACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTg                                             >  1:3002490‑M1/1‑91 (MQ=255)

                                                ccccaaaagttggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGa                                            >  2:30001‑M2/43‑91 (MQ=255)

                                                CCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGa                                            <  1:3445197‑M1/91‑1 (MQ=255)

                                                CCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGa                                            <  2:2049382‑M1/91‑1 (MQ=255)

                                                CCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGa                                            <  1:2368439‑M1/91‑1 (MQ=255)

                                                  CCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAAt                                          <  1:1008470‑M1/91‑1 (MQ=255)

                                                    ttAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGc                                        <  2:287386/91‑1 (MQ=255)

                                                    aaaagttggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAGATATAGTGAATGc                                        >  2:256411‑M2/39‑91 (MQ=255)

                                                     tAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCa                                       >  2:2471282/1‑91 (MQ=255)

                                                     tAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCa                                       >  1:2932745/1‑91 (MQ=255)

                                                       agttggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCaaa                                     >  1:3466438‑M2/36‑91 (MQ=255)

                                                       agttggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCaaa                                     >  1:956302‑M2/36‑91 (MQ=255)

                                                       aaGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCaaa                                     <  2:3218186/91‑1 (MQ=255)

                                                          ttAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCa                                  <  2:911378/91‑1 (MQ=255)

                                                          ttAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCa                                  >  2:910111/1‑91 (MQ=255)

                                                          ttAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCa                                  >  1:2477631/1‑91 (MQ=255)

                                                          tggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCa                                  >  2:1746213‑M2/33‑91 (MQ=255)

                                                          tggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCa                                  >  2:1322105‑M2/33‑91 (MQ=255)

                                                          tggattgaaagacctaactttaaggggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCa                                  >  1:2394867‑M2/33‑91 (MQ=255)

                                                            aGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAAc                                >  2:1141995/1‑91 (MQ=255)

                                                             ggTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACt                               <  1:1026505/91‑1 (MQ=255)

                                                             ggTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACt                               <  2:836513/91‑1 (MQ=255)

                                                             ggTCTTTCAATCCAACTTTTGGGGAGTATATCATTCTCATCATCTTCTAGTTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACt                               <  2:3677968/91‑1 (MQ=255)

                                                              gTCTTTCAATCAAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACta                              <  2:1205375/91‑1 (MQ=255)

                                                                cTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACtatt                            >  2:597879/1‑91 (MQ=255)

                                                                cTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACtatt                            >  2:2241515/1‑91 (MQ=255)

                                                                cTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACtatt                            >  1:2455255/1‑91 (MQ=255)

                                                                 tttCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACtatta                           >  1:489623/1‑91 (MQ=255)

                                                                  ttCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACtattat                          >  1:2025517/1‑91 (MQ=255)

                                                                  ttCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACtattat                          >  2:3918450/1‑91 (MQ=255)

                                                                  ttCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACtattat                          <  2:3491366/91‑1 (MQ=255)

                                                                  ttCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTATTTAACAAACTAAATATAGTGAATGCAAATCAACtattat                          <  2:3245956/91‑1 (MQ=255)

                                                                   tCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTattatt                         <  1:3630981/91‑1 (MQ=255)

                                                                     aaTCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTa                       <  2:474682/91‑1 (MQ=255)

                                                                      aTCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTaa                      <  1:220883/91‑1 (MQ=255)

                                                                      aTCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTaa                      <  1:3447190/91‑1 (MQ=255)

                                                                       tCCAACTTTTGGGGTGTATATCATTCTCCTCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTaaa                     >  2:2806529/1‑91 (MQ=255)

                                                                       tCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTaaa                     >  2:1611925/1‑91 (MQ=255)

                                                                          aaCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTa                  <  2:338425/91‑1 (MQ=255)

                                                                          aaCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTa                  <  2:339343/91‑1 (MQ=255)

                                                                           tcTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTAt                 <  1:1060405/90‑1 (MQ=255)

                                                                           aCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCTAATCAACTATTATTTAAATTAt                 >  2:3179656/1‑91 (MQ=255)

                                                                           aCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCACCTATTATTTAAATTAt                 >  2:3779287/1‑91 (MQ=255)

                                                                           aCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTAt                 >  2:3150007/1‑91 (MQ=255)

                                                                           aCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTAt                 <  1:2735774/91‑1 (MQ=255)

                                                                           aCTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTAt                 <  1:1414776/91‑1 (MQ=255)

                                                                            cTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATg                >  2:2884317/1‑91 (MQ=255)

                                                                             ttttGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGa               <  2:1882542/91‑1 (MQ=255)

                                                                               ttGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAat             >  1:2789869/1‑91 (MQ=255)

                                                                               ttGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAat             >  1:1679507/1‑91 (MQ=255)

                                                                                tGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAatt            >  1:3062236/1‑91 (MQ=255)

                                                                                  gggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAattat          >  1:864123‑M2/9‑91 (MQ=255)

                                                                                   ggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAattatt         >  2:2221033‑M2/8‑91 (MQ=255)

                                                                                   ggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAattatt         >  1:363997‑M2/8‑91 (MQ=255)

                                                                                   ggtgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAattatt         <  1:2673693‑M2/84‑1 (MQ=255)

                                                                                     tgtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATTAtttt       <  2:3260895‑M2/86‑1 (MQ=255)

                                                                                      gtatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATTATTTTa      <  2:2415801‑M2/87‑1 (MQ=255)

                                                                                       tatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATTATTTTaa     <  1:613760‑M2/88‑1 (MQ=255)

                                                                                       tatATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATTATTTTaa     >  1:385923‑M2/4‑91 (MQ=255)

TAAATATGAAAATATTATCAAAAAAATCAAATTTATAACAAAAATACACCCCTTAAAGTTAGGTCTTTCAATCCAACTTTTGGGGTGTATATCATTCTCATCATATTCTAGGTTGTTTTTAACAAACTAAATATAGTGAATGCAAATCAACTATTATTTAAATTATGAATTATTTTAATTC  >  USA300TCH1516_ALE/2622880‑2623060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.