BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2699622 =	78 (0.380)	12 (0.070)	6/140	NT	12.4%	intergenic (+29/+61)	copZ/ldhD_2	Copper chaperone CopZ/D‑lactate dehydrogenase
*	?	USA300TCH1516_ALE	2699690 =	101 (0.570)	12 (0.070)	6/140	NT	12.4%	coding (992/999 nt)	ldhD_2	D‑lactate dehydrogenase

Only 100 of 172 total aligned reads displayed.

AATATTCAACGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATAAA  >  USA300TCH1516_ALE/2699600‑2699780

aaTATTCAACGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTa                                                                                            <  1:2403019/91‑1 (MQ=255)

 atatTCAACGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTAc                                                                                           >  1:3021655/1‑91 (MQ=255)

 atatTCAACGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTAc                                                                                           >  2:3606279/1‑91 (MQ=255)

  tatTCAACGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACt                                                                                          <  2:289174/91‑1 (MQ=255)

   atTCAACGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTc                                                                                         <  1:2714180/91‑1 (MQ=255)

         cGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAAcc                                                                                   >  2:170631/1‑91 (MQ=255)

         cGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAAcc                                                                                   <  1:854137/91‑1 (MQ=255)

         cGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAAcc                                                                                   <  2:548870/91‑1 (MQ=255)

          gTCATCAACACCAAATTAAAAAATCGACCTGATGAGAATCCCAACAATCCAAATTATCTCATCACATCGATTTTTAACTTCCTCGCAAccc                                                                                  >  2:2729768/1‑90 (MQ=255)

          gTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCt                                                                                  >  2:775475/1‑91 (MQ=255)

             atcaACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGt                                                                               >  1:1071194/1‑91 (MQ=255)

             atcaACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGt                                                                               >  1:2412648/1‑91 (MQ=255)

             atcaACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGt                                                                               <  1:2034061/91‑1 (MQ=255)

              tcaACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTa                                                                              >  1:1004549/1‑91 (MQ=255)

              tcaACACCAAATGAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTa                                                                              <  2:1066422/91‑1 (MQ=255)

               caACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTAt                                                                             >  1:516925/1‑91 (MQ=255)

                 acacCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTAtct                                                                           <  2:1378210/91‑1 (MQ=255)

                 acacCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTAtct                                                                           >  2:1550098/1‑91 (MQ=255)

                 acaacaAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCATAGTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTAtct                                                                           <  2:2622393/91‑1 (MQ=255)

                  cacCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTAtctc                                                                          >  2:3488675/1‑91 (MQ=255)

                  cacCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTAtctc                                                                          >  1:2411518/1‑91 (MQ=255)

                  cacCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTAtctc                                                                          >  2:2521614/1‑91 (MQ=255)

                   acCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTcc                                                                         <  1:1876756/91‑1 (MQ=255)

                       AATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTc                                                                     <  2:1213905‑M1/91‑1 (MQ=255)

                        ATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCt                                                                    <  1:881728‑M1/91‑1 (MQ=255)

                         TTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTAATCAGTCCGACTTTTACTTTACTCGTAACCTAGTATCACAAGTCTg                                                                   <  2:3693169‑M1/91‑1 (MQ=255)

                          TAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGc                                                                  <  1:90188‑M1/91‑1 (MQ=255)

                           aaaaatcgaactgatgagataatttggattgttgggattctcatcagttcgattttttaatttACTCGTAACCTAGTATCTCCAGTCTGCa                                                                 >  2:2268729‑M2/64‑91 (MQ=255)

                           AAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCa                                                                 <  2:183023‑M1/91‑1 (MQ=255)

                            AAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGCTTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCaa                                                                <  2:3586760‑M1/91‑1 (MQ=255)

                            AAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCaa                                                                <  2:1408686‑M1/91‑1 (MQ=255)

                            AAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCaa                                                                <  1:3528403‑M1/91‑1 (MQ=255)

                            AAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCaa                                                                <  1:3528356‑M1/91‑1 (MQ=255)

                            AAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCaa                                                                <  1:1383734‑M1/91‑1 (MQ=255)

                             aaatcgaactgatgagataatttggattgttgggattctcatcagttcgattttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAAt                                                               >  2:920426‑M2/62‑91 (MQ=255)

                              AAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATa                                                              <  2:2232555‑M1/91‑1 (MQ=255)

                               AATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATAc                                                             >  2:3032213‑M1/1‑91 (MQ=255)

                                aTCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACa                                                            <  1:1616503/91‑1 (MQ=255)

                                   gAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCt                                                         <  2:1760003/91‑1 (MQ=255)

                                   gAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCt                                                         <  1:639810/91‑1 (MQ=255)

                                    aaCTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTa                                                        >  2:210523/1‑91 (MQ=255)

                                     aCTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTaa                                                       >  2:2457839/1‑91 (MQ=255)

                                      ctgatgagataatttggattgttgggattctcatcagttcgatttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAAt                                                      >  1:494174‑M2/53‑91 (MQ=255)

                                      cTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAAt                                                      >  1:1183595/1‑91 (MQ=255)

                                        gatgagataatttggattgttgggattctcatcagttcgatttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGt                                                    >  1:2267845‑M2/51‑91 (MQ=255)

                                        atgagataatttggattgttgggattctcatcagttcgattttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGt                                                    >  1:998601‑M2/51‑91 (MQ=255)

                                          tgaGAATCTCAACAGTCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACGTCTAATGTTg                                                  <  2:1749487/91‑1 (MQ=255)

                                          tgaGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTg                                                  <  1:1123737/91‑1 (MQ=255)

                                          tgaGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTg                                                  <  1:2100827/91‑1 (MQ=255)

                                           gagaATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGc                                                 <  1:1146075/91‑1 (MQ=255)

                                           agataatttggattgttgggattctcatcagttcgattttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGc                                                 >  1:1332687‑M2/48‑91 (MQ=255)

                                            agaATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCa                                                >  2:2653695/1‑91 (MQ=255)

                                             gataatttggattgttgggattctcatcagttcgatttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCAt                                               >  2:844159‑M2/46‑91 (MQ=255)

                                             gaATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGcct                                               >  2:3489191/1‑89 (MQ=255)

                                             gaATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCAt                                               >  2:3757158/1‑91 (MQ=255)

                                             ataatttggattgttgggattctcatcagttcgattttttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCAt                                               >  1:1207088‑M2/46‑91 (MQ=255)

                                              ataatttggattgttgggattctcatcagttcgatttttaacttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATc                                              >  1:3422827‑M2/45‑91 (MQ=255)

                                              aaTCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATc                                              <  1:1506634/91‑1 (MQ=255)

                                              aaTCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATc                                              <  1:198987/91‑1 (MQ=255)

                                              aaTCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATc                                              <  1:1506498/91‑1 (MQ=255)

                                              aaTCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATc                                              >  2:1338983/1‑91 (MQ=255)

                                               aTCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCt                                             <  2:3228521/91‑1 (MQ=255)

                                               aTCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCt                                             <  2:3228520/91‑1 (MQ=255)

                                                tCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTa                                            <  1:1455026/91‑1 (MQ=255)

                                                  ccAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAAt                                          <  1:1891626/91‑1 (MQ=255)

                                                  ccAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAAt                                          >  1:1056379/1‑91 (MQ=255)

                                                    aacaaTCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGc                                        >  1:921603/1‑91 (MQ=255)

                                                     acaaTCCAAATTATCTCATCAGTTCGATTTTTAATTTACTAGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTCGCATCTCATGCa                                       >  2:3665752/1‑91 (MQ=255)

                                                      caaTCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCAt                                      >  1:3636350/1‑91 (MQ=255)

                                                      caaTCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCAt                                      >  1:2931406/1‑91 (MQ=255)

                                                           cAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACa                                 >  1:3891269/1‑91 (MQ=255)

                                                            aaaTTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACaa                                >  2:1648582/1‑91 (MQ=255)

                                                            aaaTTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACaa                                >  1:2267672/1‑91 (MQ=255)

                                                            aaaTTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACaa                                <  1:2417504/91‑1 (MQ=255)

                                                            aaaTTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACaa                                >  2:3946631/1‑91 (MQ=255)

                                                             aaTTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAAt                               <  2:2005009/91‑1 (MQ=255)

                                                                tATCTCATCAGTTCGATCTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAg                            <  1:3383710/91‑1 (MQ=255)

                                                                 aTCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGa                           <  2:1867597/91‑1 (MQ=255)

                                                                 aTCTCATCAGTTCGATTTTTAATTTACTCGTAAACTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGa                           <  1:3244787/91‑1 (MQ=255)

                                                                  tctcATCAGTTCGATTTTTAATTTACTCGTAACGTAGTATCTCCAGCCTGCAATACATCGAATGTTGCATCTAATGCATCGACAATTAGAt                          >  1:3154137/1‑91 (MQ=255)

                                                                  tctcATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGAt                          >  2:2827641/1‑91 (MQ=255)

                                                                    tcatcaGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGAttt                        >  2:2193197/1‑91 (MQ=255)

                                                                         aGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAAc                   <  2:3417852/91‑1 (MQ=255)

                                                                          gTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACt                  <  1:2712787/91‑1 (MQ=255)

                                                                            tCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGc                <  2:66925/91‑1 (MQ=255)

                                                                            tCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGc                <  2:66722/91‑1 (MQ=255)

                                                                             cGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCa               <  1:978454/91‑1 (MQ=255)

                                                                             cGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCa               <  2:3149961/91‑1 (MQ=255)

                                                                               aTTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGc             >  2:1620704/1‑91 (MQ=255)

                                                                                  tttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTc          <  1:2687591‑M2/83‑1 (MQ=255)

                                                                                  tttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTc          >  1:575704‑M2/9‑91 (MQ=255)

                                                                                   ttaatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCa         >  2:401512‑M2/8‑91 (MQ=255)

                                                                                    taatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAg        >  1:2159682‑M2/7‑91 (MQ=255)

                                                                                    taatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAg        >  1:2390255‑M2/7‑91 (MQ=255)

                                                                                     aatttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGt       <  1:2793135‑M2/86‑1 (MQ=255)

                                                                                      atttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGta      >  2:1997501‑M2/5‑91 (MQ=255)

                                                                                       tttACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGtat     <  1:2948139‑M2/88‑1 (MQ=255)

                                                                                          aCTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATaaa  <  1:1941341/91‑1 (MQ=255)

                                                                                          aCTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATaaa  >  1:411705/1‑91 (MQ=255)

                                                                                          aCTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATaaa  <  1:1690567/91‑1 (MQ=255)

AATATTCAACGTCATCAACACCAAATTAAAAAATCGAACTGATGAGAATCCCAACAATCCAAATTATCTCATCAGTTCGATTTTTAATTTACTCGTAACCTAGTATCTCCAGTCTGCAATACATCTAATGTTGCATCTAATGCATCGACAATTAGATTTTTAACTGCAGCTTCAGTATAAA  >  USA300TCH1516_ALE/2699600‑2699780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.