BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2740966 =	122 (0.600)	33 (0.200)	16/132	NT	23.6%	intergenic (+8/+73)	yhdG_2/USA300HOU_RS14115	putative amino acid permease YhdG/Isoleucine 2‑epimerase
*	?	USA300TCH1516_ALE	2741016 =	113 (0.670)	33 (0.200)	16/132	NT	23.6%	intergenic (+58/+23)	yhdG_2/USA300HOU_RS14115	putative amino acid permease YhdG/Isoleucine 2‑epimerase

Only 100 of 242 total aligned reads displayed.

ATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTGCATCTT  >  USA300TCH1516_ALE/2740927‑2741106

aTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttat                                                                                           <  1:1534946/91‑1 (MQ=255)

aTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttat                                                                                           <  1:156166/91‑1 (MQ=255)

aTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttat                                                                                           >  1:2328360/1‑91 (MQ=255)

 tGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatt                                                                                          >  2:682124/1‑91 (MQ=255)

 tGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatt                                                                                          >  2:26324/1‑91 (MQ=255)

 ggacaaggttggtaatagcgattatcttaatataaaatAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTtttta                                                                                            >  2:3827208‑M1/39‑91 (MQ=255)

  gACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTCGAAATGATTttttattt                                                                                         >  1:3391089/1‑91 (MQ=255)

  gACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTCGAAATGATTttttattt                                                                                         >  1:3390965/1‑91 (MQ=255)

   aCGTAGCTGAATACCACCCACCAAAATAAAAAATAAATAAAA‑‑TCATCTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatttt                                                                                        >  1:3150560/1‑91 (MQ=255)

   aCGTAGCTGAATACCAAACAAAAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatttt                                                                                        <  2:1852486/91‑1 (MQ=255)

    caaggttggtaatagcgattatcttaatataaaatAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttattt                                                                                         >  2:1426847‑M1/36‑91 (MQ=255)

     gTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTtttattttat                                                                                      >  1:2352605/1‑91 (MQ=255)

     gTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTtttattttat                                                                                      <  1:217957/91‑1 (MQ=255)

        gCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATAtt                                                                                   >  2:432085/1‑91 (MQ=255)

        gCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATAtt                                                                                   >  1:2803973/1‑91 (MQ=255)

         ttggtaatagcgattatcttaataaaaaaaAAAAAAAATCATTGCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTatat                                                                                    >  2:1086990‑M1/31‑91 (MQ=255)

         cTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTa                                                                                  <  2:3101281/91‑1 (MQ=255)

         cTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTa                                                                                  >  2:1295543/1‑91 (MQ=255)

         cTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTa                                                                                  <  1:2969869/91‑1 (MQ=255)

          tGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTaa                                                                                 <  2:3946528/91‑1 (MQ=255)

          tGAAAACAAACCACAAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTaa                                                                                 <  2:1813794/91‑1 (MQ=255)

          ggAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTTCCATCTGATTAACAGCCAGATGTGGAAATGATTTTTTATTTTATATTaa                                                                                 <  2:3480446/90‑1 (MQ=255)

            aaTACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGa                                                                               <  2:1895427/91‑1 (MQ=255)

             aTACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGAt                                                                              >  2:1439158/1‑91 (MQ=255)

               accaccCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATaa                                                                            <  1:2482412/91‑1 (MQ=255)

                   cccaccAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGc                                                                        <  2:2553254/91‑1 (MQ=255)

                   cccaccAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGc                                                                        >  2:3864141/1‑91 (MQ=255)

                   cccaccAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGACGGGGAAATGATATTTTATTTTATATAAAGATAATCGc                                                                        >  2:2768280/1‑91 (MQ=255)

                    ccaccaACATACAAAATAAAAAAAA‑‑TCATTTCCCATCTGCTTAACATCCAGCTGAGGACATGATTTTCTATTTTATAGTAAGATACTCGcc                                                                       >  2:223637/1‑90 (MQ=255)

                    ccaccaAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCt                                                                       <  1:619320/91‑1 (MQ=255)

                    ccaccaAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCt                                                                       <  1:441673/91‑1 (MQ=255)

                       ccaAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTAtt                                                                    >  1:1142422/1‑91 (MQ=255)

                       ccaAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTAtt                                                                    <  1:2078228/91‑1 (MQ=255)

                        caAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTa                                                                   <  1:2041650/91‑1 (MQ=255)

                        caAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTa                                                                   <  1:3457350/91‑1 (MQ=255)

                         aaaataaaaaataaAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAc                                                                  <  1:102353/91‑1 (MQ=255)

                           aataaaaaatcaaaAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTACTACCa                                                                >  2:3207442/1‑91 (MQ=255)

                           aataaaaaataaaaAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCa                                                                <  2:361854/91‑1 (MQ=255)

                               aaaaataaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCt                                                            >  1:2067349/1‑91 (MQ=255)

                               aaaaataaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCt                                                            >  2:695642/1‑91 (MQ=255)

                                aaaataaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTCTTTATTTTATATTAAGATAATCCCTATTACCAACCtt                                                           >  1:2372727/1‑91 (MQ=255)

                                aaaataaaaaaAA‑‑TCATTTCCCATCTGAGTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCtt                                                           <  2:284794/91‑1 (MQ=255)

                                  aaaataaaaaatcatttccacatctggatgttaatcagatgggaaatgattttttttATTTTATATTAAGATAATCGCTATTACCAACCtt                                                           >  1:1099383‑M2/58‑91 (MQ=255)

                                    taaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTcc                                                       <  2:247888/91‑1 (MQ=255)

                                     aaaaaaaa‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCa                                                      <  2:3602416/91‑1 (MQ=255)

                                      aaaaaaa‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAg                                                     >  2:3941754/1‑91 (MQ=255)

                                           AA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATg                                                <  1:1737624‑M1/91‑1 (MQ=255)

                                               TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTc                                              >  1:2597183‑M1/1‑91 (MQ=255)

                                                 atttccacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCat                                            >  1:978374‑M2/43‑91 (MQ=255)

                                                  tttccacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGACata                                           >  1:3298872‑M2/42‑91 (MQ=255)

                                                  TTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTACGATCCTCGCTACTACCCACCTTGTCCCGCTATGTcatt                                           <  2:597473‑M1/91‑2 (MQ=255)

                                                  TTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata                                           >  1:1185806‑M1/1‑91 (MQ=255)

                                                   ttccacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCatat                                          >  1:1678161‑M2/41‑91 (MQ=255)

                                                   ttccacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCatat                                          >  2:303363‑M2/41‑91 (MQ=255)

                                                   ttccacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCatat                                          >  2:127532‑M2/41‑91 (MQ=255)

                                                   ttccacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCatat                                          >  1:224752‑M2/41‑91 (MQ=255)

                                                    ttccacatctgatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATAGTTATTACCAACCTTGTCCAGATATGTCATAtt                                         >  2:2617919‑M2/40‑91 (MQ=255)

                                                    tccacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATAtt                                         >  2:353080‑M2/40‑91 (MQ=255)

                                                    TCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATAtt                                         <  2:2392490‑M1/91‑1 (MQ=255)

                                                     acatctggatgttaatcagatgggaaatgattttttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTg                                        >  1:3113070‑M2/39‑91 (MQ=255)

                                                      cacatctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATGTGTCATATTGa                                       >  1:3584081‑M2/38‑91 (MQ=255)

                                                       cATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGAt                                      >  2:135851/1‑91 (MQ=255)

                                                           tGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTaa                                  <  2:3142098/91‑1 (MQ=255)

                                                           ctggatgttaatcagatgggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTaa                                  >  2:2007922‑M2/33‑91 (MQ=255)

                                                            gATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAg                                 <  1:40914/91‑1 (MQ=255)

                                                             aTTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGt                                <  1:724868/91‑1 (MQ=255)

                                                              ttAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGtt                               <  1:8051/91‑1 (MQ=255)

                                                              ttAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGtt                               <  2:3753207/91‑1 (MQ=255)

                                                               tAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTa                              >  1:3020413/1‑91 (MQ=255)

                                                                   aTCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTg                          <  1:1367316/91‑1 (MQ=255)

                                                                   aTCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTg                          <  2:2379720/91‑1 (MQ=255)

                                                                    tCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGc                         <  1:1308446/91‑1 (MQ=255)

                                                                    tCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGc                         <  2:517335/91‑1 (MQ=255)

                                                                    tCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGc                         <  2:1641510/91‑1 (MQ=255)

                                                                     ccAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCt                        >  1:579322/1‑91 (MQ=255)

                                                                       aGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTc                      >  1:857962/1‑91 (MQ=255)

                                                                        gATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTcc                     <  2:910434/91‑1 (MQ=255)

                                                                         aTGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCa                    <  1:3849758/91‑1 (MQ=255)

                                                                          tgtgGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCaa                   >  1:3121985/1‑91 (MQ=255)

                                                                          tgtgGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCaa                   <  2:1982555/91‑1 (MQ=255)

                                                                          tgtgGAAATGATTTTTTATTTTAGATTAAGATAATCTCTATTACCAACCTTGTCCAGATAGGTCATATTGATCTAAGTTACCTGCtttgga                   <  2:3359591/91‑5 (MQ=255)

                                                                           gtgGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCaaa                  <  2:3256413/91‑1 (MQ=255)

                                                                            tgGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAg                 >  1:1045106/1‑91 (MQ=255)

                                                                             ggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCATATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGc                <  1:3333748‑M2/77‑1 (MQ=255)

                                                                             ggaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGc                <  1:1808570‑M2/77‑1 (MQ=255)

                                                                              gaaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGca               >  1:3032760‑M2/14‑91 (MQ=255)

                                                                               aaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGcag              >  2:278921‑M2/13‑91 (MQ=255)

                                                                               aaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGcag              <  2:117006‑M2/79‑1 (MQ=255)

                                                                               aaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGcag              >  2:2684894‑M2/13‑91 (MQ=255)

                                                                               aaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGcag              >  2:278418‑M2/13‑91 (MQ=255)

                                                                               aaatgattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATCTCATATTGATCTAAGTTACCTGCTACCAAAAcag              >  2:422926‑M2/13‑91 (MQ=255)

                                                                                   gattttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGcagtcag          <  2:2988585‑M2/83‑1 (MQ=255)

                                                                                     ttttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTg        >  1:869489‑M2/7‑91 (MQ=255)

                                                                                     ttttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTg        <  2:2726592‑M2/85‑1 (MQ=255)

                                                                                       ttttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTGCa      <  2:530048‑M2/87‑1 (MQ=255)

                                                                                        tttATTTTATATTAAGATAATCGCTATTACCAACTTTGTCCAGATATGTCATATTGATCTACGTTACCTGCTTCCAAAGCAGTCAGTGcac     >  2:852752‑M2/4‑90 (MQ=255)

                                                                                         ttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTGCATc    <  1:3707914‑M2/89‑1 (MQ=255)

                                                                                         ttATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTGCATc    <  2:1744237‑M2/89‑1 (MQ=255)

                                                                                          tATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTGCATCt   <  2:1033716‑M2/90‑1 (MQ=255)

                                                                                           attttatATTAAGATAATCGCGATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTGCAtctt  <  2:114699/91‑1 (MQ=255)

ATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGATCTAAGTTACCTGCTTCCAAAGCAGTCAGTGCATCTT  >  USA300TCH1516_ALE/2740927‑2741106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.