BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2830190 =	176 (0.860)	15 (0.090)	10/138	NT	9.4%	intergenic (+18/+429)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
*	?	USA300TCH1516_ALE	2830247 =	137 (0.780)	15 (0.090)	10/138	NT	9.4%	intergenic (+75/+372)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1

Only 100 of 230 total aligned reads displayed.

CATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATT  >  USA300TCH1516_ALE/2830157‑2830337

cATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTa                                                                                            >  2:2176198/1‑91 (MQ=255)

cATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTa                                                                                            <  2:159515/91‑1 (MQ=255)

 aTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGGCTTCGTTTTACCGCGTGTTTaa                                                                                           >  2:1905036/1‑91 (MQ=255)

 aTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTaa                                                                                           >  2:2898869/1‑91 (MQ=255)

   tAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAata                                                                                         >  2:2928767/1‑91 (MQ=255)

       gCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGt                                                                                     <  2:250503/91‑1 (MQ=255)

         ttattaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTta                                                                                   <  1:1168535/91‑1 (MQ=255)

         ttattaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTta                                                                                   >  2:3798659/1‑91 (MQ=255)

          tattaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTtat                                                                                  <  1:3173071/91‑1 (MQ=255)

          tattaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTtat                                                                                  >  2:619420/1‑91 (MQ=255)

          tattaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTtat                                                                                  <  1:3765325/91‑1 (MQ=255)

           attaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTtata                                                                                 <  2:1054259/91‑1 (MQ=255)

               attattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACata                                                                             <  1:309665/91‑1 (MQ=255)

               attattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACata                                                                             <  1:1351464/91‑1 (MQ=255)

                ttattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatat                                                                            <  1:3257271/91‑1 (MQ=255)

                ttattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatat                                                                            >  2:12938/1‑91 (MQ=255)

                  attaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatatat                                                                          <  1:2421403/91‑1 (MQ=255)

                  attaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACCTCGTTTTACCGCGTGTTTAATATTGTTCTACatatat                                                                          >  2:302598/1‑91 (MQ=255)

                   ttaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATAtt                                                                         <  2:2525077/91‑1 (MQ=255)

                    taaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTc                                                                        >  2:461093/1‑91 (MQ=255)

                     aaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCt                                                                       <  1:57230/91‑1 (MQ=255)

                     aaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGCTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCt                                                                       >  1:42361/1‑91 (MQ=255)

                        cTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAAt                                                                    >  1:1540043/1‑91 (MQ=255)

                         tATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAAtt                                                                   <  1:902573/91‑1 (MQ=255)

                         tATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAAtt                                                                   <  1:3818657/91‑1 (MQ=255)

                          aTGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTg                                                                  >  1:1764571/1‑91 (MQ=255)

                           tGTTAAAGACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                 <  1:1975503/91‑1 (MQ=255)

                           tGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                 <  1:2698837/91‑1 (MQ=255)

                              tAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGcaca                                                              <  1:192444/91‑1 (MQ=255)

                               aaaaaCACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAt                                                             >  1:831084/1‑91 (MQ=255)

                               aaaaaCACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAt                                                             <  2:3228861/91‑1 (MQ=255)

                                 AAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAttt                                                           >  2:3406034‑M1/1‑91 (MQ=255)

                                 AAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAttt                                                           <  2:1459726‑M1/91‑1 (MQ=255)

                                   ACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTaa                                                         <  2:376804‑M1/91‑1 (MQ=255)

                                    CACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTaaa                                                        >  1:2985051‑M1/1‑91 (MQ=255)

                                      CGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACt                                                      <  1:1005493‑M1/91‑1 (MQ=255)

                                       GCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACtt                                                     >  1:1790677‑M1/1‑91 (MQ=255)

                                        CGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTc                                                    <  2:2270439‑M1/91‑1 (MQ=255)

                                        CGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTc                                                    <  1:318577‑M1/91‑1 (MQ=255)

                                        CGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTc                                                    <  2:790432‑M1/91‑1 (MQ=255)

                                         ggtaaaacgaagtcagtcaattcaaactgatttcgcccaccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCg                                                   >  1:3709600‑M2/50‑91 (MQ=255)

                                         ggtaaaacgaagtcagtcaattcaaactgatttcgcccaccgcgtgcttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCg                                                   >  2:882533‑M2/50‑91 (MQ=255)

                                         GGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCg                                                   <  1:3099325‑M1/91‑1 (MQ=255)

                                         GGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCg                                                   <  1:1196235‑M1/91‑1 (MQ=255)

                                         GGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCg                                                   <  1:2081264‑M1/91‑1 (MQ=255)

                                            aaaacgaagtcagtcaattcaaactgatttcgcccaccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTaa                                                >  2:496377‑M2/47‑91 (MQ=255)

                                             ggCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTaaa                                               <  2:3728116/91‑1 (MQ=255)

                                             ggCGAAATCAGTTTGAATTGACTGACTTCGTTCTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACTTTTAAACTTCGTaaa                                               <  1:3368314/91‑1 (MQ=255)

                                             cgCGAAATCAGTTTGAATTGACTGACTTCGTTTTACTGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTaaa                                               <  2:3916702/90‑1 (MQ=255)

                                             aaacgaagtcagtcaattcaaactgatttcgcccaccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTaaa                                               >  2:2053197‑M2/46‑91 (MQ=255)

                                              gCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAAt                                              >  1:3864188/1‑91 (MQ=255)

                                               cGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATg                                             <  1:3730501/91‑1 (MQ=255)

                                               cGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATg                                             <  2:264830/91‑1 (MQ=255)

                                               cGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATg                                             <  1:2314798/91‑1 (MQ=255)

                                               cGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATg                                             >  1:3653479/1‑91 (MQ=255)

                                                gAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGc                                            >  1:1265965/1‑91 (MQ=255)

                                                 aaaTCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGcc                                           >  2:1105572/1‑91 (MQ=255)

                                                  agtcagtcaattcaaactgatttcgttttaccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCa                                          >  1:854225‑M2/41‑91 (MQ=255)

                                                   aTCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCaa                                         <  1:1848845/91‑1 (MQ=255)

                                                    tCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCacg                                        >  2:3935994/1‑89 (MQ=255)

                                                    tCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAAt                                        >  1:717782/1‑91 (MQ=255)

                                                    tCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAAt                                        >  2:3846862/1‑91 (MQ=255)

                                                     cAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATg                                       <  2:1701896/91‑1 (MQ=255)

                                                     cAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATg                                       <  1:1567434/91‑1 (MQ=255)

                                                      aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATgg                                      >  2:2959345/1‑91 (MQ=255)

                                                      aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATgg                                      >  2:26683/1‑91 (MQ=255)

                                                      aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATgg                                      >  1:2291284/1‑91 (MQ=255)

                                                        tttGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGa                                    >  1:3009996/1‑91 (MQ=255)

                                                        tttGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGa                                    >  1:259962/1‑91 (MQ=255)

                                                            aaTTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTgg                                >  1:924994/1‑91 (MQ=255)

                                                              ttGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGa                              >  1:2926408/1‑91 (MQ=255)

                                                               tgactgacTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGAc                             <  1:2376189/91‑1 (MQ=255)

                                                                   tgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGaa                         >  1:2416633/1‑91 (MQ=255)

                                                                   tgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCGAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGaa                         <  2:1852340/91‑1 (MQ=255)

                                                                     gatttcgcccaccgcgtgtttAATATTGTTATACATATATTCTAATTGCGCATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                       <  2:426261‑M2/70‑1 (MQ=255)

                                                                     actTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                       <  1:3932351/91‑1 (MQ=255)

                                                                     actTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                       <  2:2361808/91‑1 (MQ=255)

                                                                     actTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                       <  1:2012787/91‑1 (MQ=255)

                                                                     actTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                       <  1:3024048/91‑1 (MQ=255)

                                                                     actTCGTTTTACCGCGTGTTTAATATTGGTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                       >  2:1060492/1‑91 (MQ=255)

                                                                      ctTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATg                      <  1:3073864/91‑1 (MQ=255)

                                                                      ctTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCGAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATg                      <  2:3468273/91‑1 (MQ=255)

                                                                       ttCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAAATGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGa                     >  2:3057433/1‑91 (MQ=255)

                                                                         cGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGata                   >  1:1810247/1‑91 (MQ=255)

                                                                         cGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGata                   <  2:3714705/91‑1 (MQ=255)

                                                                          gTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGatat                  >  1:1587857/1‑91 (MQ=255)

                                                                            tttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATAttt                <  1:167369/91‑1 (MQ=255)

                                                                              tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTc              <  1:2974028/91‑1 (MQ=255)

                                                                                ccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGc            >  1:3457289‑M2/11‑91 (MQ=255)

                                                                                    gtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaaa        >  1:1017673‑M2/7‑91 (MQ=255)

                                                                                    gtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaaa        <  1:497019‑M2/85‑1 (MQ=255)

                                                                                     tgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAAt       >  1:3281944‑M2/6‑91 (MQ=255)

                                                                                     tgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAAt       <  2:1046116‑M2/86‑1 (MQ=255)

                                                                                      gtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAAtt      <  2:2941735‑M2/87‑1 (MQ=255)

                                                                                      gtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAAtt      <  1:1455540‑M2/87‑1 (MQ=255)

                                                                                        ttAATATTGTTATACATATATTCTAAGTGCACATTTAAACTTCGTAAATGCCACTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTa    <  2:1884218‑M2/89‑1 (MQ=255)

                                                                                         tAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTAt   >  1:1914241‑M2/2‑91 (MQ=255)

                                                                                         tAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTAt   >  1:185732‑M2/2‑91 (MQ=255)

                                                                                          aaTATTGTTATACATATATTCTAATTGCACCTTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt  <  1:3395533/91‑1 (MQ=255)

                                                                                          aaTATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt  <  1:2174785/91‑1 (MQ=255)

CATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATT  >  USA300TCH1516_ALE/2830157‑2830337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.