BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	25306 =	509 (0.560)	103 (0.130)	20/138	NT	19.7%	intergenic (+204/‑42)	USA300HOU_pUSA300HOUMR0030/USA300HOU_pUSA300HOUMR0031	Sin recombinase/hypothetical protein
*	?	CP000731	25340 =	401 (0.510)	103 (0.130)	20/138	NT	19.7%	intergenic (+238/‑8)	USA300HOU_pUSA300HOUMR0030/USA300HOU_pUSA300HOUMR0031	Sin recombinase/hypothetical protein

Only 100 of 1373 total aligned reads displayed.

TTTAAAATATATTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAAAC  >  CP000731/25250‑25430

tttAAAATATATTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAgg                                                                                               >  1:914301/1‑91 (MQ=255)

  tAAAATATATTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGgtg                                                                                             >  1:2339692/1‑91 (MQ=255)

   agaaTATATTGTAAAGTAAAAAGTATTTGACATTTGTATCATGAATATTTACACTCATAAATGTCGAATACTTTGTACATTTATGAGgtgt                                                                                            <  2:1167334/89‑1 (MQ=255)

    aaaTATATTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGtt                                                                                           >  1:3464120/1‑91 (MQ=255)

     aaTATATTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTta                                                                                          <  2:92752/91‑1 (MQ=255)

     aaTATATTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTta                                                                                          >  2:1473903/1‑91 (MQ=255)

     aaTATATTATAATCTAAAACGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAACACTTTTTACATTTATGAGGTGTta                                                                                          >  2:1335749/1‑91 (MQ=255)

        atatTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATaa                                                                                       >  1:3825776/1‑91 (MQ=255)

        atatTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATaa                                                                                       >  1:646871/1‑91 (MQ=255)

        atatTATAATGTAAAAAGTATTTGAAATTTGTATAAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATaa                                                                                       <  2:3766365/91‑1 (MQ=255)

          attatAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATg                                                                                     >  1:2893765/1‑91 (MQ=255)

          attatAATGTAAAAAGTATTTGAAAAAAATAAAAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATg                                                                                     <  2:494118/91‑1 (MQ=255)

           ttatAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGa                                                                                    <  1:446907/91‑1 (MQ=255)

           ttatAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTAAATTTATGAGATGTTATAATGa                                                                                    >  2:2752131/1‑91 (MQ=255)

             ataATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAAt                                                                                  <  1:1475332/91‑1 (MQ=255)

               AATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAGATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAAttt                                                                                >  2:3044027‑M1/1‑91 (MQ=255)

                ATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTa                                                                               <  1:1788956‑M1/91‑1 (MQ=255)

                  GTAAAAAGTATTTGACATTTGTATCAAACATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAAt                                                                             >  1:603912‑M1/1‑91 (MQ=255)

                  GTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAAt                                                                             >  2:1386614‑M1/1‑91 (MQ=255)

                   TAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAAtt                                                                            >  1:3145675‑M1/1‑91 (MQ=255)

                   TAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAAtt                                                                            >  2:1983025‑M1/1‑91 (MQ=255)

                    AAAAAGTATTTGACATTTGGATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTc                                                                           >  2:3337499‑M1/1‑91 (MQ=255)

                     AAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTcc                                                                          <  1:1140002‑M1/91‑1 (MQ=255)

                      AAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCt                                                                         >  1:1586832‑M1/1‑91 (MQ=255)

                      AAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCt                                                                         >  1:2421796‑M1/1‑91 (MQ=255)

                      AAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCt                                                                         >  1:1241035‑M1/1‑91 (MQ=255)

                       AAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCtt                                                                        >  2:3864357‑M1/1‑91 (MQ=255)

                       AAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCtt                                                                        <  1:101101‑M1/91‑1 (MQ=255)

                         gtatttgacatttatgagtgtaaatatttttgatacaaatgtcaaatactttttacattTATGAGGTTTTATAATGAATTTAATTCCtt‑‑‑tt                                                                   >  2:3542468‑M2/60‑91 (MQ=255)

                          tatttgacatttatgagtgtaaatatttttgatacaaatgtcaaatactttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑tta                                                                  >  1:2655983‑M2/59‑91 (MQ=255)

                           ATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTt‑‑‑ttaa                                                                 >  2:2951708‑M1/1‑90 (MQ=255)

                            TTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑ttatt                                                                <  2:580751‑M1/91‑1 (MQ=255)

                              TGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑ttattat                                                              <  2:3646092‑M1/91‑1 (MQ=255)

                                ACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑ttattatta                                                            <  2:2260847‑M1/91‑1 (MQ=255)

                                   TTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTAttt                                                         <  1:748209‑M1/91‑1 (MQ=255)

                                   TTTGCATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTAttt                                                         >  1:3288759‑M1/1‑91 (MQ=255)

                                    TTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTAtttt                                                        >  2:2210291‑M1/1‑91 (MQ=255)

                                      gTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTaa                                                      >  2:531952/1‑91 (MQ=255)

                                      gTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTaa                                                      >  1:509817/1‑91 (MQ=255)

                                        aTCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAAtt                                                    >  1:2968146/1‑91 (MQ=255)

                                        aTCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAAtt                                                    >  2:3903101/1‑91 (MQ=255)

                                        aTCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAAtt                                                    >  2:3222306/1‑91 (MQ=255)

                                        aTCAAAAATATTTACACTCATAAATGTCAAATACTTTCTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAAtt                                                    >  1:3341884/1‑91 (MQ=255)

                                         tCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAAttt                                                   <  2:2571467/91‑1 (MQ=255)

                                           aaaaaTATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAAttttt                                                 >  1:2090283/1‑91 (MQ=255)

                                             aaaTATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTc                                               <  2:1846225/91‑1 (MQ=255)

                                             aaaTATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTc                                               >  2:162387/1‑91 (MQ=255)

                                                  tttACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGtt                                          >  1:270130/1‑91 (MQ=255)

                                                   ttACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGttt                                         >  1:2268998/1‑91 (MQ=255)

                                                    tACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTa                                        >  1:3774565/1‑91 (MQ=255)

                                                    tACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTa                                        >  1:1878203/1‑91 (MQ=255)

                                                    tACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTa                                        <  1:3540532/91‑1 (MQ=255)

                                                    tACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTa                                        >  1:2586228/1‑91 (MQ=255)

                                                    tACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTa                                        >  1:2051132/1‑91 (MQ=255)

                                                    tACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTa                                        >  1:565815/1‑91 (MQ=255)

                                                    tACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTa                                        >  1:1360281/1‑91 (MQ=255)

                                                     acacTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTAt                                       >  1:2855618/1‑91 (MQ=255)

                                                     acacTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTAt                                       <  2:3126860/91‑1 (MQ=255)

                                                      cacTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATg                                      <  2:750048/91‑1 (MQ=255)

                                                        CTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGa                                    >  2:666307‑M1/1‑91 (MQ=255)

                                                         TCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGAc                                   <  1:3901070‑M1/91‑1 (MQ=255)

                                                         TCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGAc                                   >  1:3396612‑M1/1‑91 (MQ=255)

                                                          tATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACg                                  >  2:2603589‑M1/2‑91 (MQ=255)

                                                          cataaatgtaaaaagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACg                                  >  1:3662710‑M2/33‑91 (MQ=255)

                                                            gaaaTTTCAAATGCTTGTTACATTTATGAGGTTTTAGTATGGGTTTGAGTCCTT‑‑‑TCATGTGTATTTTTATGTTTTCTTGTCCATGCACGGc                                <  2:1067919/90‑1 (MQ=255)

                                                            TAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGc                                <  1:832106‑M1/91‑1 (MQ=255)

                                                            TAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGc                                >  2:792841‑M1/1‑91 (MQ=255)

                                                              AATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCta                              <  2:2092774‑M1/91‑1 (MQ=255)

                                                               ATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCtat                             >  2:859362‑M1/1‑91 (MQ=255)

                                                                tgtaaaaagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCtata                            >  1:218492‑M2/27‑91 (MQ=255)

                                                                tgtaaaaagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCtata                            >  2:403428‑M2/27‑91 (MQ=255)

                                                                TGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCtata                            <  1:1945840‑M1/91‑1 (MQ=255)

                                                                 gtaaaaagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaa                           >  2:2313694‑M2/26‑91 (MQ=255)

                                                                 gtaaaaagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaa                           >  2:3404571‑M2/26‑91 (MQ=255)

                                                                 gtaaaaagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaa                           >  1:3598952‑M2/26‑91 (MQ=255)

                                                                 gtaaaaagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaa                           >  2:1906235‑M2/26‑91 (MQ=255)

                                                                 cgaaaatactttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaa                           <  2:2135768‑M2/72‑1 (MQ=255)

                                                                 GTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATaa                           >  2:3710872‑M1/1‑91 (MQ=255)

                                                                  TCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAc                          <  1:1524878‑M1/91‑1 (MQ=255)

                                                                  TCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAc                          <  2:2711633‑M1/91‑1 (MQ=255)

                                                                   caaatactttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaact                         <  1:2744076‑M2/74‑1 (MQ=255)

                                                                    aaatactttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaacta                        >  1:1684568‑M2/17‑91 (MQ=255)

                                                                     aatactttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaactaa                       <  2:2820523‑M2/76‑1 (MQ=255)

                                                                      atactttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaactaac                      >  2:2905794‑M2/15‑91 (MQ=255)

                                                                      aagtatttgacatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAtaactaac                      >  2:3497472‑M2/21‑91 (MQ=255)

                                                                       tactttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACa                     <  2:317657‑M2/78‑1 (MQ=255)

                                                                           ttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAGata                 >  1:3194103‑M2/10‑91 (MQ=255)

                                                                           ttttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAata                 <  1:3718968‑M2/82‑1 (MQ=255)

                                                                            tttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAatat                <  1:3067341‑M2/83‑1 (MQ=255)

                                                                             ttacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATAtt               >  1:1090062‑M2/8‑91 (MQ=255)

                                                                              tacattTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATAttt              >  2:2406460‑M2/7‑91 (MQ=255)

                                                                               acatttatgagGTGTTATAATGAATTTAATTCCTTTTATTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAatat                <  2:1790802‑M2/80‑1 (MQ=255)

                                                                               acatttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTa             <  1:1304064‑M2/80‑1 (MQ=255)

                                                                                  tttatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCt          >  2:2489709‑M2/9‑91 (MQ=255)

                                                                                   ttatgagGTGTTATAATGAATTTAATTCCCT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCtt         >  1:2518659‑M2/8‑91 (MQ=255)

                                                                                    tatgagGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTc        <  2:1517612‑M2/85‑1 (MQ=255)

                                                                                        agGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGaa    <  2:3592417‑M2/89‑1 (MQ=255)

                                                                                        agGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGaa    >  2:168936‑M2/3‑91 (MQ=255)

                                                                                        agGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGaa    <  1:996482‑M2/89‑1 (MQ=255)

                                                                                          gtgtTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAAAc  <  1:1636446/91‑1 (MQ=255)

TTTAAAATATATTATAATGTAAAAAGTATTTGACATTTGTATCAAAAATATTTACACTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTT‑‑‑TTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAAAC  >  CP000731/25250‑25430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.