| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 37045 | 144 (0.710) | 20 (0.120) | 9/128 | NT | 13.9% | intergenic (+69/‑768) | USA300HOU_RS14915/ugpQ_1 | hypothetical protein/Glycerophosphodiester phosphodiesterase, cytoplasmic |
| ? | USA300TCH1516_ALE | = 37067 | 133 (0.820) | intergenic (+91/‑746) | USA300HOU_RS14915/ugpQ_1 | hypothetical protein/Glycerophosphodiester phosphodiesterase, cytoplasmic | |||||
Only 100 of 270 total aligned reads displayed.
ACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTA > USA300TCH1516_ALE/36977‑37157 | aCTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTAc < 2:2886983/91‑1 (MQ=255) aGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagt < 1:769126‑M2/91‑4 (MQ=255) aGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagt < 1:1522254‑M2/91‑4 (MQ=255) aGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagt < 2:3223183‑M2/91‑4 (MQ=255) gTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtg > 1:1692082‑M2/1‑87 (MQ=255) gTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtg < 2:3090688‑M2/91‑5 (MQ=255) tGGCCGATTGTGCTTTATGAGCTTATGACATAAATCCTAACTCGAAATAAATAATCATATAACTAAACTTATTTTTTAAAGTTTACaataa < 2:119273/91‑5 (MQ=255) ggCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgat > 2:2646252‑M2/1‑85 (MQ=255) ccGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatat < 1:837110‑M2/91‑9 (MQ=255) ccGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatat < 1:1892712‑M2/91‑9 (MQ=255) catacccctaggcaagcatgcacgtacaaaatcgtaagataaaaAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATg > 1:652554‑M1/45‑91 (MQ=255) cGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatg > 1:2764605‑M2/1‑82 (MQ=255) cGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatg > 1:1867956‑M2/1‑82 (MQ=255) gATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgc > 2:2438377‑M2/1‑81 (MQ=255) aTTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgct > 1:3841604‑M2/1‑80 (MQ=255) aTTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgct > 1:2684996‑M2/1‑80 (MQ=255) aTTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgct > 1:819400‑M2/1‑80 (MQ=255) acccctaggcaagcatgcacgtacaaaatcgtaagataaaaAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCtt > 2:1349207‑M1/42‑91 (MQ=255) gtgCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttat < 1:3347606‑M2/91‑15 (MQ=255) gCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttattt < 1:2245152‑M2/91‑17 (MQ=255) gCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttactt < 2:1026380‑M2/91‑17 (MQ=255) ttGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTAttttt > 1:1094947/1‑91 (MQ=255) ttGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCAGATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTAttttt < 1:3134774/91‑1 (MQ=255) aggcaagcatgcacgtacaaaatcgtaagataaaaAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTAttttt > 1:1309339‑M1/36‑91 (MQ=255) tgaGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTAt < 1:2866271/91‑1 (MQ=255) tgaGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTAt < 1:3373148/91‑1 (MQ=255) aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCt < 2:1942363/91‑1 (MQ=255) aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCt < 1:400562/91‑1 (MQ=255) aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCt < 2:727322/91‑1 (MQ=255) aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCt < 2:1306724/91‑1 (MQ=255) aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCt > 1:2975277/1‑91 (MQ=255) aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCt > 1:2975758/1‑91 (MQ=255) aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCt < 1:920388/91‑1 (MQ=255) gCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCtt < 2:2458233/91‑1 (MQ=255) ttGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTAc > 2:563136/1‑91 (MQ=255) tGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACg > 2:1482636/1‑91 (MQ=255) tGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACg > 2:475080/1‑91 (MQ=255) ggACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGAt > 1:3093334/1‑91 (MQ=255) ggACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGAt > 2:3046103/1‑91 (MQ=255) ggACATAAATCCTAAATCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGAt > 2:2338816/1‑91 (MQ=255) aCATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGAttt < 2:315393/91‑1 (MQ=255) aTAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTg > 2:3859245/1‑91 (MQ=255) aaaTCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTa < 2:3876469/91‑1 (MQ=255) aaTCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTAc > 1:737759/1‑91 (MQ=255) aaTCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTAc > 1:33674/1‑91 (MQ=255) aTCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACg < 1:3913163/91‑1 (MQ=255) aTCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACg < 2:613270/91‑1 (MQ=255) ccTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtccc < 2:3550713‑M2/91‑41 (MQ=255) ccTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTg < 2:1543879/91‑1 (MQ=255) ccTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTg > 1:289392/1‑91 (MQ=255) tAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCa < 1:2675158/91‑1 (MQ=255) tCGAAATAAATAGGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTATTTATCTGACGATTTTGTAAGTGCATGCt < 2:2844511/91‑1 (MQ=255) tCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCt < 2:2191618/91‑1 (MQ=255) cGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCtt > 1:3750889/1‑91 (MQ=255) cGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCtt < 1:3619421/91‑1 (MQ=255) aataaataAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGcc < 1:1933749/91‑1 (MQ=255) ataaataaGCATATCACTAAACTGATTTTTTAAATTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCt > 2:2605257/1‑91 (MQ=255) ataaataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCt > 2:466723/1‑91 (MQ=255) AAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAg < 1:2823824‑M1/91‑1 (MQ=255) aataaGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagca < 2:662043‑M2/91‑55 (MQ=255) ataaGCATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcac < 1:1380100‑M2/91‑56 (MQ=255) cATATCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcacaatcg < 1:220274‑M2/91‑61 (MQ=255) atatCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcacaatcgg < 1:1058157‑M2/91‑62 (MQ=255) tCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcacaatcggcca < 2:3124069‑M2/91‑65 (MQ=255) tCACTAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcacaatcggcca < 2:1528372‑M2/91‑65 (MQ=255) TCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTc > 1:1565499‑M1/1‑91 (MQ=255) TCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTc < 1:3794519‑M1/91‑1 (MQ=255) cACTAGCCTGATTTTTTAACGTTTACAGGGATATGCTTATTTTTTTATCGTGCGATTTTGTACGTGCATGCTGTCCTAGGTGTATGGCtag < 2:1642322/91‑3 (MQ=255) CACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCg > 2:3629504‑M1/1‑91 (MQ=255) ACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGa > 2:1866068‑M1/1‑91 (MQ=255) ACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGa > 1:1800759‑M1/1‑91 (MQ=255) ACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGa > 1:1213072‑M1/1‑91 (MQ=255) ACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGa < 2:2311913‑M1/91‑1 (MQ=255) tAAACTGATTTTTTAAAGTTTACagtgatatgcttatttttttcgagttaggatttatgtcccaagctcatcaagcacaatcggccactag < 1:868776‑M2/91‑69 (MQ=255) tAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcacaatcggccactag < 1:2289530‑M2/91‑69 (MQ=255) tAAACTGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcacaatcggccactag < 1:3863359‑M2/91‑69 (MQ=255) TAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGc < 1:1724838‑M1/91‑1 (MQ=255) TAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGc < 1:1408754‑M1/91‑1 (MQ=255) aaaCTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGcc > 2:2121065/1‑91 (MQ=255) atcTGATTTTTTAAAGTTGACAGTGATATGCTGATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCa < 2:857566/89‑1 (MQ=255) aaCTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCa < 1:175946/91‑1 (MQ=255) aCTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCAt < 1:501046/91‑1 (MQ=255) cTGATTTTTTAAAGAGTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCAtt < 2:2706967/91‑1 (MQ=255) tGATTTTTTAAAGTTTACagtgatatgcttatttatttcgagttaggatttatgtcccaagctcatcaagcacaatcggccactagtttaa > 1:3550713‑M2/1‑18 (MQ=255) gATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGGACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAg < 2:1838925/91‑1 (MQ=255) ttttttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGtc > 1:2078430/1‑91 (MQ=255) tttttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGtct > 1:2023447/1‑91 (MQ=255) tttttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGtct < 1:568051/91‑1 (MQ=255) ttttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGtctc < 2:3003339/91‑1 (MQ=255) tttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGtctct < 2:3404805/91‑1 (MQ=255) aaaGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGc > 1:2579047/1‑91 (MQ=255) aaaGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGc < 1:1547565/91‑1 (MQ=255) aaaGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGc > 2:1766655/1‑91 (MQ=255) aaGTTTACAGTGATATGGTTATTTTTTTATCTTACGACTTTGTACGTGCTTGCTATGATAGGGGGATGGCTCGAGCCATTAGTCTCTCGca < 2:1074541/91‑1 (MQ=255) aaGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCTTTAGTCTCTCGca > 1:2477315/1‑91 (MQ=255) aGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGcac > 2:445238/1‑91 (MQ=255) tgtACAGTGGTATGCTTATGTTTTGATCTTACGATGTTGGACGTGCATGCTTGCCTAGGGGTAGGGCTCGAGCCATTAGTCTCTCGCACAt < 2:3694673/89‑1 (MQ=255) ttACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATa < 1:1630224/91‑1 (MQ=255) cAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTa < 1:3297690/91‑1 (MQ=255) cAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTa > 1:3647179/1‑91 (MQ=255) | ACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTA > USA300TCH1516_ALE/36977‑37157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |