BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	62785 =	241 (1.180)	13 (0.070)	8/142	NT	6.6%	intergenic (‑252/+261)	USA300TCH1516_00053/speG	hypothetical protein/Spermidine N(1)‑acetyltransferase
*	?	USA300TCH1516_ALE	62819 =	153 (0.850)	13 (0.070)	8/142	NT	6.6%	intergenic (‑286/+227)	USA300TCH1516_00053/speG	hypothetical protein/Spermidine N(1)‑acetyltransferase

Only 100 of 247 total aligned reads displayed.

TGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGCGTC  >  USA300TCH1516_ALE/62729‑62909

tgtgTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTa                                                                                            >  2:1918990/1‑91 (MQ=255)

 gtgtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTAt                                                                                           >  2:241210/1‑91 (MQ=255)

  tgtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTGCCGCAAAGTGAAGGATGCTCTAtt                                                                                          <  2:195566/91‑1 (MQ=255)

  tgtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTAtt                                                                                          <  1:736061/91‑1 (MQ=255)

  tgtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTAtt                                                                                          <  2:2523157/91‑1 (MQ=255)

   gtAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTAttt                                                                                         <  1:88186/91‑1 (MQ=255)

    tAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTAtttt                                                                                        >  1:3593381/1‑91 (MQ=255)

    tAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTAtttt                                                                                        <  1:1264805/91‑1 (MQ=255)

       ttCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTttgt                                                                                     <  1:994967/91‑1 (MQ=255)

       ttCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTttgt                                                                                     >  1:184391/1‑91 (MQ=255)

        tCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTttgtt                                                                                    <  2:2004740/91‑1 (MQ=255)

           gATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGaa                                                                                 >  1:1404651/1‑91 (MQ=255)

             tAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAAt                                                                               >  1:2043601/1‑91 (MQ=255)

             tAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAAt                                                                               >  1:2101223/1‑91 (MQ=255)

             tAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAAt                                                                               >  1:2043735/1‑91 (MQ=255)

               aCGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTa                                                                             >  1:1017090/1‑91 (MQ=255)

                 gTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAat                                                                           >  2:206938/1‑91 (MQ=255)

                    cTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAAtata                                                                        <  2:2037408/91‑1 (MQ=255)

                    cTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAAtata                                                                        <  2:1906800/91‑1 (MQ=255)

                    cTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAAtata                                                                        >  1:2778187/1‑91 (MQ=255)

                     tattatGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATaa                                                                       >  1:1272741/1‑91 (MQ=255)

                      tcagaatgaagcttatattaatttcaacaaaaatagagcatccttcactttgcggtaagggatgctctATTTTTGTTGAAATTAATATAAg                                                                      >  2:2381822‑M2/69‑91 (MQ=255)

                       ttatGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATCAATATAAGc                                                                     >  2:84526/1‑91 (MQ=255)

                        tatGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCt                                                                    <  1:2526281/91‑1 (MQ=255)

                         atGTTAATTGAAAATAGACAAAGATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCtt                                                                   <  2:3186517/91‑1 (MQ=255)

                          tGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTc                                                                  <  2:882890/91‑1 (MQ=255)

                          tGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTc                                                                  >  2:3954721/1‑91 (MQ=255)

                            ttAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCAt                                                                <  1:2762308/91‑1 (MQ=255)

                              aaTTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTc                                                              >  1:1742725/1‑91 (MQ=255)

                                 tGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTga                                                           >  2:451739/1‑91 (MQ=255)

                                   aaaaTAGACAAGAATTAATTATGAGCCTCCCTTACCCCTTTGAGACGGATGTTATATTTTTCTTCAAATTAACGTAAGCTTCATTCTgagt                                                         <  2:3140023/91‑3 (MQ=255)

                                   aaaaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgata                                                         <  1:1176764/91‑1 (MQ=255)

                                   aaaaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgata                                                         >  2:3387834/1‑91 (MQ=255)

                                   aaaaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgata                                                         <  1:450726/91‑1 (MQ=255)

                                    aaaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgatag                                                        >  2:1034705/1‑91 (MQ=255)

                                     aaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgataga                                                       >  1:3069317/1‑91 (MQ=255)

                                     aaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgataga                                                       <  2:3554673/91‑1 (MQ=255)

                                     aaTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTGTTGTTGAAATTAATATAAGCTTCATTCTgataga                                                       >  2:3793668/1‑91 (MQ=255)

                                      aTAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgatagat                                                      <  1:3604797/91‑1 (MQ=255)

                                       tAGACAAAAATAAATTGAGAGCATCCCTTACCGCAATGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTgatagata                                                     <  2:3917704/91‑1 (MQ=255)

                                        aGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGatagatag                                                    >  2:2774880/1‑91 (MQ=255)

                                         gACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGt                                                   >  1:3022780/1‑91 (MQ=255)

                                         gACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGt                                                   <  1:2330627/91‑1 (MQ=255)

                                         gACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTCAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGt                                                   >  1:3318560/1‑91 (MQ=255)

                                          aCAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTc                                                  >  2:3361380/1‑91 (MQ=255)

                                              aaataaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATta                                              >  1:3745346/1‑91 (MQ=255)

                                              aaataaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATta                                              >  2:1382630/1‑91 (MQ=255)

                                               aatagagcatccttcactttgcggtaagggatgctctcaatttATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaa                                             >  1:3407350‑M2/44‑91 (MQ=255)

                                               aataaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaa                                             >  1:348406/1‑91 (MQ=255)

                                               aataaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaa                                             <  2:1645067/91‑1 (MQ=255)

                                                ataagtTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaat                                            <  1:3744290/91‑1 (MQ=255)

                                                ataaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaat                                            <  1:980463/91‑1 (MQ=255)

                                                 taaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaata                                           <  1:497585/91‑1 (MQ=255)

                                                 taaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaata                                           <  2:2821843/91‑1 (MQ=255)

                                                 taaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaata                                           <  1:1573753/91‑1 (MQ=255)

                                                  aaatTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATtaataa                                          <  2:3204254/91‑1 (MQ=255)

                                                     ttGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTg                                       >  2:237809/1‑91 (MQ=255)

                                                     ttGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTg                                       >  2:649127/1‑91 (MQ=255)

                                                      tGAGAGCATCCCTTACCGCAAAGTTAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGt                                      <  2:3685089/91‑1 (MQ=255)

                                                      tGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGt                                      <  1:1435792/91‑1 (MQ=255)

                                                        AGAGCATCGCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCTTTCTGATAGATAGTCATTAATAATTGttt                                    >  2:3436251‑M1/1‑91 (MQ=255)

                                                        AGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGttt                                    >  1:710389‑M1/1‑91 (MQ=255)

                                                          agcatccttcactttgcggtaagggatgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGc                                  >  2:432185‑M2/33‑91 (MQ=255)

                                                            catccttcactttgcggtaagggatgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCaa                                >  2:2861342‑M2/31‑91 (MQ=255)

                                                            CATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCaa                                >  2:1098282‑M1/1‑91 (MQ=255)

                                                            CATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCaa                                >  1:2186697‑M1/1‑91 (MQ=255)

                                                             ATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCaaa                               <  1:2554218‑M1/91‑1 (MQ=255)

                                                              TCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAAt                              <  1:2931231‑M1/91‑1 (MQ=255)

                                                               ccttcactttgcggtaagggatgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATc                             >  1:161317‑M2/28‑91 (MQ=255)

                                                               CCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATc                             <  2:1450219‑M1/91‑1 (MQ=255)

                                                                CCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCg                            >  2:2311139‑M1/1‑91 (MQ=255)

                                                                CCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCg                            >  1:426712‑M1/1‑91 (MQ=255)

                                                                CCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCg                            <  2:3886254‑M1/91‑1 (MQ=255)

                                                                 ttcactttgcggtaagggatgctctATTTTTGTTTAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGt                           >  2:753715‑M2/26‑91 (MQ=255)

                                                                 cTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGt                           >  1:1591422/1‑91 (MQ=255)

                                                                 cTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGt                           <  2:2962184/91‑1 (MQ=255)

                                                                   tACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTCATATAAGCTTCATTCTGATAGATAGTCATTACTAATTGTTTGCAAATCGtta                         >  2:163824/1‑91 (MQ=255)

                                                                     ctttgcggtaagggatgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGttatt                       >  1:2667071‑M2/22‑91 (MQ=255)

                                                                        cAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAg                    >  1:3909663/1‑91 (MQ=255)

                                                                         aaaGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGt                   >  2:2089516/1‑91 (MQ=255)

                                                                          aaGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTa                  <  1:3340839/91‑1 (MQ=255)

                                                                          aaGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTa                  >  1:1377760/1‑91 (MQ=255)

                                                                           aGTGAAGGATGCTCTATTTTTTTTTATTTTAATATAAGCTTCATTCTGATAGATAGTCATTAATACTTGTTTGCAAATCGTTATTAAGTAc                 >  2:3114674/1‑91 (MQ=37)

                                                                            gTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTAcc                <  1:2585501/91‑1 (MQ=255)

                                                                             tGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCg               >  1:3509575/1‑91 (MQ=255)

                                                                             tGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCg               >  1:2270193/1‑91 (MQ=255)

                                                                              gAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCgt              >  1:3204505/1‑91 (MQ=255)

                                                                              gAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCgt              >  1:2079904/1‑91 (MQ=255)

                                                                                 ggatgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCgttgt           >  2:1252719‑M2/10‑91 (MQ=255)

                                                                                 ggatgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCgttgt           >  1:605529‑M2/10‑91 (MQ=255)

                                                                                  gatgctctATTTTTGATGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATACTTGTTTGCAAATCGTTATTAAGTACCgttgtt          >  1:3371815‑M2/9‑91 (MQ=255)

                                                                                   atgctctATTTTTTTTTTTATTTATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTa         >  2:3306744‑M2/8‑91 (MQ=255)

                                                                                    tgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTAc        <  1:814787‑M2/85‑1 (MQ=255)

                                                                                    tgctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTAc        <  2:1329673‑M2/85‑1 (MQ=255)

                                                                                     gctctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACa       >  1:2961828‑M2/6‑91 (MQ=255)

                                                                                       tctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGc     >  1:643111‑M2/4‑91 (MQ=255)

                                                                                       tctATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGc     <  2:3633061‑M2/88‑1 (MQ=255)

                                                                                         tATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGCGt   >  2:1969681‑M2/2‑91 (MQ=255)

                                                                                          aTTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGCGtc  >  1:903706/1‑91 (MQ=255)

                                                                                          aTTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGCGtc  >  1:1103621/1‑91 (MQ=255)

TGTGTAATTCTGATAACGTCCTATTATGTTAATTGAAAATAGACAAAAATAAATTGAGAGCATCCCTTACCGCAAAGTGAAGGATGCTCTATTTTTGTTGAAATTAATATAAGCTTCATTCTGATAGATAGTCATTAATAATTGTTTGCAAATCGTTATTAAGTACCGTTGTTACAGCGTC  >  USA300TCH1516_ALE/62729‑62909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.