New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 88662 =245 (1.200)19 (0.120) 9/126 NT 9.7% intergenic (+35/‑730) nusG_1/USA300TCH1516_00080 Transcription termination/antitermination protein NusG/hypothetical protein
?USA300TCH1516_ALE 88722 = 163 (1.020)intergenic (+95/‑670) nusG_1/USA300TCH1516_00080 Transcription termination/antitermination protein NusG/hypothetical protein

Only 100 of 335 total aligned reads displayed.

CTAGTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACC  >  USA300TCH1516_ALE/88632‑88812
                                                                                          |                                                                                          
    ttCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgtg                                                                                        <  2:1149413/91‑1 (MQ=255)
      cTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgtgtg                                                                                      >  2:292508/1‑91 (MQ=255)
       tAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgtgtgt                                                                                     <  1:1046147/91‑1 (MQ=255)
       tAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgtgtgt                                                                                     <  2:912002/91‑1 (MQ=255)
       tAAATTGAGAAATAAATAGATATAAAAATATCCGCCTTAATCAATAATTTAAATAACTTTTTATTGTTAAGGAGGATATTTTTTAgtgtgt                                                                                     <  1:3508105/91‑1 (MQ=255)
        aaaTTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTa                                                                                    <  2:141953/91‑1 (MQ=255)
           ttGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAAt                                                                                 <  2:3898962/91‑1 (MQ=255)
           ttGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAAt                                                                                 <  2:2816368/91‑1 (MQ=255)
             ttttaatttacacactaaaaaatatcctccttaacaataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTa                                                                               >  2:2262565‑M2/78‑91 (MQ=255)
             gagaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTa                                                                               <  2:409511/91‑1 (MQ=255)
             gagaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTa                                                                               >  1:1112277/1‑91 (MQ=255)
             gagaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTa                                                                               <  2:3093572/91‑1 (MQ=255)
              agaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTGAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaa                                                                              <  1:3948278/91‑1 (MQ=255)
               gaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaa                                                                             <  1:1340677/91‑1 (MQ=255)
                aaataaatAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaaa                                                                            <  2:3860485/91‑1 (MQ=255)
                aaataaatAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaaa                                                                            <  1:2412894/91‑1 (MQ=255)
                 aataaataGATATAAAAATATCCTCCTTAATCAATAATTTAAATAGCTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaaaa                                                                           <  2:2620778/91‑1 (MQ=255)
                  ataaataGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACAAATTATTGTAACGTTGGATATATCTTAGTGTGTTGATTACAAAg                                                                          >  2:2166212/1‑91 (MQ=255)
                   taaataGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGa                                                                         >  2:1499821/1‑91 (MQ=255)
                       taGATATAAAAATATCCTCCTTAATCAATAATTTAAATAAGTTACTAGTGTTAAGGAGGGAATTTTTTATTGTGTAAATTAAAAAGAAttt                                                                     <  2:3543112/91‑1 (MQ=255)
                       taGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAAttt                                                                     <  1:1816752/91‑1 (MQ=255)
                       taGATATAAAAATATCCTCCTTAATCAATAATTTAAAAAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAAttt                                                                     >  1:3336525/1‑91 (MQ=255)
                         gATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTa                                                                   >  1:2310666/1‑91 (MQ=255)
                         gATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTa                                                                   >  2:1296229/1‑91 (MQ=255)
                         gATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTa                                                                   >  1:1538488/1‑91 (MQ=255)
                         gATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTGAGTGTGTAAATTAAAAAGAATTTTa                                                                   >  1:3685940/1‑91 (MQ=255)
                          atatAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTGAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTag                                                                  <  1:3418117/91‑1 (MQ=255)
                            ataAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTagaa                                                                >  2:1708342/1‑91 (MQ=255)
                            ataAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTagaa                                                                <  1:3627533/91‑1 (MQ=255)
                               AAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAgaagaa                                                             >  1:3201474‑M1/1‑91 (MQ=255)
                                AAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAAt                                                            <  1:856216‑M1/91‑1 (MQ=255)
                                AAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAAt                                                            >  2:2710411‑M1/1‑91 (MQ=255)
                                 AATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATa                                                           >  1:1271845‑M1/1‑91 (MQ=255)
                                  ATATCCTCCTTAATCACTAATTTAAATCACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATaa                                                          <  1:3853932‑M1/91‑1 (MQ=255)
                                    ATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACa                                                        >  2:1802656‑M1/1‑91 (MQ=255)
                                    ATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACa                                                        <  1:1730206‑M1/91‑1 (MQ=255)
                                     TCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAt                                                       <  2:2201093‑M1/91‑1 (MQ=255)
                                       ctccttaacaataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAttt                                                     >  2:1780266‑M2/52‑91 (MQ=255)
                                       ctccttaacaataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAttt                                                     >  1:302910‑M2/52‑91 (MQ=255)
                                       ctccttaacaataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAttt                                                     >  2:3342097‑M2/52‑91 (MQ=255)
                                       CTCCTTAATCAATCATTTAACCAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTCAATTCAAAAGAATTTGAGACGAATAACAttt                                                     >  1:2017724‑M1/1‑91 (MQ=255)
                                       CTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAttt                                                     <  1:3695865‑M1/91‑1 (MQ=255)
                                       CTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAttt                                                     <  1:2114515‑M1/91‑1 (MQ=255)
                                       CTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAttt                                                     <  1:2485626‑M1/91‑1 (MQ=255)
                                        tccttaacaataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTa                                                    >  1:3568794‑M2/51‑91 (MQ=255)
                                        TCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTa                                                    >  2:34055‑M1/1‑91 (MQ=255)
                                         CCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTAt                                                   >  2:3797944‑M1/1‑91 (MQ=255)
                                         CCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTAt                                                   >  1:639274‑M1/1‑91 (MQ=255)
                                         CCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTAt                                                   <  1:3886734‑M1/91‑1 (MQ=255)
                                          CTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATc                                                  <  1:3533636‑M1/91‑1 (MQ=255)
                                           TTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCa                                                 <  1:1953258‑M1/91‑1 (MQ=255)
                                           TTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCa                                                 >  2:3170178‑M1/1‑91 (MQ=255)
                                            TAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaa                                                >  2:249101‑M1/1‑91 (MQ=255)
                                              ATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaaaa                                              >  1:1901303‑M1/1‑91 (MQ=255)
                                               caataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaaaaa                                             >  2:1185059‑M2/44‑91 (MQ=255)
                                                cAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaaaaaa                                            <  2:679395/91‑1 (MQ=255)
                                                 aataatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTATTGTTTATATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAAc                                           >  2:1947771/1‑91 (MQ=255)
                                                 aataatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAAc                                           >  1:2056205/1‑91 (MQ=255)
                                                 aataatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAAc                                           >  1:1486527/1‑91 (MQ=255)
                                                   taatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTg                                         >  2:483093/1‑91 (MQ=255)
                                                     atTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGtt                                       >  1:44372/1‑91 (MQ=255)
                                                     atTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGtt                                       >  2:1912212/1‑91 (MQ=255)
                                                      tttAAATAACTTATTATTGTTAAGGAGGATATTTTTTTTTTTTTTTATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTc                                      >  2:323728/1‑91 (MQ=255)
                                                      tttAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTc                                      >  1:681730/1‑91 (MQ=255)
                                                      tttAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTc                                      <  2:1642316/91‑1 (MQ=255)
                                                      tttAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTc                                      <  2:125603/91‑1 (MQ=255)
                                                        tAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCAt                                    >  1:2178883/1‑91 (MQ=255)
                                                          aaTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTa                                  >  1:834594/1‑91 (MQ=255)
                                                          aaTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTa                                  <  2:101797/91‑1 (MQ=255)
                                                          aaTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTa                                  >  2:1583081/1‑91 (MQ=255)
                                                           aTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTAc                                 <  1:2505241/91‑1 (MQ=255)
                                                           aTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTAc                                 <  2:286818/91‑1 (MQ=255)
                                                            tAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTAcc                                <  1:707126/91‑1 (MQ=255)
                                                              aCTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCtt                              <  2:702067/91‑1 (MQ=255)
                                                              aCTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCtt                              <  2:1788650/91‑1 (MQ=255)
                                                               cTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCtta                             <  1:1618788/91‑1 (MQ=255)
                                                               cTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCtta                             <  2:2966903/91‑1 (MQ=255)
                                                               cTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCtta                             <  2:2975826/91‑1 (MQ=255)
                                                                ttattaTTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCttat                            <  2:3875974/91‑1 (MQ=255)
                                                                 tattatTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCttatt                           <  1:3593832/91‑1 (MQ=255)
                                                                 tattatTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACAATTATAAAAAAACTGTTCATTACCttatt                           <  2:2020789/91‑1 (MQ=255)
                                                                   ttattGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTaa                         <  2:948746/91‑1 (MQ=255)
                                                                    tattGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAAt                        >  1:1384460/1‑91 (MQ=255)
                                                                      ttGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTg                      >  1:3773916/1‑91 (MQ=255)
                                                                         ttAAGGAGGATATCTTTTAGTGTGTAAATTAACAAGGACTCTAGAAGACTAACATTTATCAAAAAACTGCACACTAACTCATTAACTTaaa                   >  2:2572857/1‑91 (MQ=255)
                                                                             ggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATtat               <  2:2420956‑M2/78‑1 (MQ=255)
                                                                               aggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATtatat             >  1:1211604‑M2/12‑91 (MQ=255)
                                                                               aggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATtatat             <  2:2149835‑M2/80‑1 (MQ=255)
                                                                               aggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATtatat             >  1:3921586‑M2/12‑91 (MQ=255)
                                                                                  atatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAAt          >  1:1020274‑M2/9‑91 (MQ=255)
                                                                                  atatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAAt          >  1:2675102‑M2/9‑91 (MQ=255)
                                                                                   tatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAAtt         <  2:1854208‑M2/84‑1 (MQ=255)
                                                                                    atttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTAACTTATTAATTGAAATTATATAATTa        >  2:3711744‑M2/7‑91 (MQ=255)
                                                                                     tttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTATCTTATTAATTGAAATTATATAATTaa       >  2:3419057‑M2/6‑91 (MQ=255)
                                                                                     tttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaa       <  1:1438547‑M2/86‑1 (MQ=255)
                                                                                     tttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaa       <  1:2900752‑M2/86‑1 (MQ=255)
                                                                                       tttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaa     <  2:3656652‑M2/88‑1 (MQ=255)
                                                                                        ttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaaa    >  2:2652632‑M2/3‑91 (MQ=255)
                                                                                        ttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaaa    >  2:816257‑M2/3‑91 (MQ=255)
                                                                                         tTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAAc   <  1:273152‑M2/90‑1 (MQ=255)
                                                                                          |                                                                                          
CTAGTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACC  >  USA300TCH1516_ALE/88632‑88812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.