New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 260284 =152 (0.750)14 (0.080) 8/138 NT 9.7% intergenic (‑398/‑190) potD_1/pflB Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase
?USA300TCH1516_ALE 260324 = 131 (0.750)intergenic (‑438/‑150) potD_1/pflB Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase

Only 100 of 243 total aligned reads displayed.

TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACT  >  USA300TCH1516_ALE/260234‑260414
                                                                                          |                                                                                          
taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACaaa                                                                                            >  2:409352/1‑91 (MQ=255)
 aCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAAt                                                                                           <  2:2447035/91‑1 (MQ=255)
  cTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAAtt                                                                                          <  1:591102/91‑1 (MQ=255)
  cTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAAtt                                                                                          >  2:2542631/1‑91 (MQ=255)
  cTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGCGTAACAGAATGCATTTAGCATATTACTGTTACAAAAAtt                                                                                          >  1:3677313/1‑91 (MQ=255)
   tCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTa                                                                                         <  2:381013/91‑1 (MQ=255)
    ccTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAg                                                                                        <  2:163606/91‑1 (MQ=255)
     cTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGt                                                                                       <  1:422331/91‑1 (MQ=255)
      tAAATTAAAGTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTa                                                                                      <  2:38666/91‑1 (MQ=255)
       aaaTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTAc                                                                                     <  1:1257724/91‑1 (MQ=255)
        aaTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACa                                                                                    <  1:1748134/91‑1 (MQ=255)
             aCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAGCAGAATGCTATTCGCATATTACTGTTACACAAATTAGTACAGTTTc                                                                               <  1:3149521/91‑1 (MQ=255)
             aCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTc                                                                               <  2:540795/91‑1 (MQ=255)
              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              >  1:550802/1‑91 (MQ=255)
              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              <  2:3248039/91‑1 (MQ=255)
              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              >  2:347469/1‑91 (MQ=255)
              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              <  1:793583/91‑1 (MQ=255)
                   aaaGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGtt                                                                         >  2:370154/1‑91 (MQ=255)
                      gCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTg                                                                      <  2:1514300/91‑1 (MQ=255)
                       cAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGa                                                                     <  2:2836190/91‑1 (MQ=255)
                         aTGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                   >  1:2274442/1‑91 (MQ=255)
                          tGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacat                                                                  >  2:3879474/1‑91 (MQ=255)
                           gAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacata                                                                 <  1:147335/91‑1 (MQ=255)
                             aaaTAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacataca                                                               >  2:1742644/1‑91 (MQ=255)
                             aaaTAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacataca                                                               <  2:3058556/91‑1 (MQ=255)
                              aaTAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacatacat                                                              >  1:2746772/1‑91 (MQ=255)
                                 aGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtg                                                           <  2:2180059/91‑1 (MQ=255)
                                    gAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatg                                                        <  1:1663118/91‑1 (MQ=255)
                                    gAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatg                                                        <  1:3869208/91‑1 (MQ=255)
                                     aaCATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatga                                                       >  2:2375586/1‑91 (MQ=255)
                                       cATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGaaa                                                     >  2:519751/1‑91 (MQ=255)
                                           ataACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTg                                                 <  2:1038396/91‑1 (MQ=255)
                                           ataACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTg                                                 <  2:2222724/91‑1 (MQ=255)
                                            taACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGt                                                >  1:1681305/1‑91 (MQ=255)
                                            taACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGt                                                >  1:897527/1‑91 (MQ=255)
                                              aCTGTTGAGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              <  1:1972225/91‑1 (MQ=255)
                                               cTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACa                                             >  2:903931/1‑91 (MQ=255)
                                                tgttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACAt                                            <  1:3723456/91‑1 (MQ=255)
                                                tgttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACAt                                            <  2:1467464/91‑1 (MQ=255)
                                                tgttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACAt                                            <  2:460168/91‑1 (MQ=255)
                                                tgttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACAt                                            <  2:833271/91‑1 (MQ=255)
                                                tgttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATGAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACAt                                            <  1:3136480/91‑1 (MQ=255)
                                                 gttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATa                                           <  2:3150629/91‑1 (MQ=255)
                                                 gttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATa                                           >  1:2538955/1‑91 (MQ=255)
                                                 gttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATa                                           <  1:1529182/91‑1 (MQ=255)
                                                   TGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAAt                                         <  1:1077360‑M1/91‑1 (MQ=255)
                                                   TGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAAt                                         <  1:1318882‑M1/91‑1 (MQ=255)
                                                     TGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAAttt                                       <  1:65514‑M1/91‑1 (MQ=255)
                                                      GTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTCGACATACATTTGATGAAAATTGTACATAATTTa                                      <  1:3246222‑M1/91‑1 (MQ=255)
                                                       taacagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAt                                     >  1:905044‑M2/36‑91 (MQ=255)
                                                        AACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtg                                    >  2:3302531‑M1/1‑91 (MQ=255)
                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  2:3196712‑M1/1‑91 (MQ=255)
                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  1:3574063‑M1/1‑91 (MQ=255)
                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  2:2624093‑M1/1‑91 (MQ=255)
                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGGTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  1:3963092‑M1/1‑91 (MQ=255)
                                                           AGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGa                                 >  1:1565772‑M1/1‑91 (MQ=255)
                                                           AGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGa                                 <  2:139123‑M1/91‑1 (MQ=255)
                                                           AGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGa                                 <  2:1112184‑M1/91‑1 (MQ=255)
                                                            gtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaa                                >  2:614229‑M2/31‑91 (MQ=255)
                                                             taatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                               >  2:1977987‑M2/30‑91 (MQ=255)
                                                             aaTGCAATTGGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                               <  1:3788070/91‑1 (MQ=255)
                                                             aaTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                               >  2:2548723/1‑91 (MQ=255)
                                                              aTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaa                              >  2:2988466/1‑91 (MQ=255)
                                                                gCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaa                            >  2:692137/1‑91 (MQ=255)
                                                                 cAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaaa                           >  1:3798436/1‑91 (MQ=255)
                                                                 cAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaaa                           >  1:1690291/1‑91 (MQ=255)
                                                                 cAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaaa                           <  1:1119816/91‑1 (MQ=255)
                                                                  aaTTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAAt                          >  2:2335573/1‑91 (MQ=255)
                                                                     tAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATccc                       >  2:165829/1‑89 (MQ=255)
                                                                     tAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcac                       >  2:3756100/1‑91 (MQ=255)
                                                                      aGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTTCATAATTTATGTGAAAAAAATcaca                      >  2:2797603/1‑91 (MQ=255)
                                                                      aGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcaca                      <  1:2182489/91‑1 (MQ=255)
                                                                      aGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcaca                      >  1:1010467/1‑91 (MQ=255)
                                                                       gCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTTACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaa                     <  1:1448421/91‑1 (MQ=255)
                                                                       gCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaa                     <  1:72586/91‑1 (MQ=255)
                                                                         atatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaaca                   <  2:1352721/91‑1 (MQ=255)
                                                                          tatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCAcaacaa                  >  1:2486925/1‑91 (MQ=255)
                                                                          tatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCAcaacaa                  <  1:342858/91‑1 (MQ=255)
                                                                          tatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCAcaacaa                  >  1:3615223/1‑91 (MQ=255)
                                                                              aCTGTTACACAAATTAGTACAGATTCTATGTTTTTACATACATTTGATGAAAATTGTACATAGTTTATGTGAAAAAAATCACAACAAACAt              >  2:3381492/1‑91 (MQ=255)
                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            >  2:2781692‑M2/11‑91 (MQ=255)
                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            <  2:335303‑M2/81‑1 (MQ=255)
                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            <  1:563284‑M2/81‑1 (MQ=255)
                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCAGAACAAACATGCt           <  1:3024801‑M2/82‑1 (MQ=255)
                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           <  1:2234694‑M2/82‑1 (MQ=255)
                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           >  2:1144571‑M2/10‑91 (MQ=255)
                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           >  2:1385789‑M2/10‑91 (MQ=255)
                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           >  1:3927937‑M2/10‑91 (MQ=255)
                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           <  2:3090893‑M2/82‑1 (MQ=255)
                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           >  1:286029‑M2/10‑91 (MQ=255)
                                                                                 gttacacaaAATAGTACAGTTTCCATGTTTTGACATACATTTGATGAAAATCGTACATAATTTATGTGAAAAAAATCACAACAAACATgca           >  2:698705‑M2/10‑90 (MQ=255)
                                                                                    acacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACa        <  1:1490927‑M2/85‑1 (MQ=255)
                                                                                        aaaTTAGTACAGTTCCAATGTAATGAAATACATTTGATGAAAATTGTACATAAAAAAAAAAAAAAAAATCACAACAAACATGCTACAATGa    <  2:620916/91‑1 (MQ=255)
                                                                                        aaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGa    <  1:956903‑M2/89‑1 (MQ=255)
                                                                                        aaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGa    >  2:1893797‑M2/3‑91 (MQ=255)
                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   <  2:3717027‑M2/90‑1 (MQ=255)
                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   <  1:2836690‑M2/90‑1 (MQ=255)
                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   >  2:288453‑M2/2‑91 (MQ=255)
                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAAAAGTAAATAATATATGTAAAAAAAATCACAACAAACATGCTACAATGAc   <  2:2492751‑M2/90‑1 (MQ=255)
                                                                                          aTTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACt  <  1:2093405/91‑1 (MQ=255)
                                                                                          |                                                                                          
TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACT  >  USA300TCH1516_ALE/260234‑260414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.