BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 284040	167 (0.820)	10 (0.060)	6/140	NT	6.0%	intergenic (+265/+55)	ldh1/ptsG_2	L‑lactate dehydrogenase 1/PTS system glucose‑specific EIICBA component
*	?	USA300TCH1516_ALE	= 284055	165 (0.930)	10 (0.060)	6/140	NT	6.0%	intergenic (+280/+40)	ldh1/ptsG_2	L‑lactate dehydrogenase 1/PTS system glucose‑specific EIICBA component

Only 100 of 220 total aligned reads displayed.

GCGATTTGCGGGCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACGTGAG  >  USA300TCH1516_ALE/283965‑284144

gCGATTTGCGGGCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGt                                                                                           <  1:104486/91‑1 (MQ=255)

 cGATTTGCGGGATCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTa                                                                                          >  1:3583904‑M2/1‑90 (MQ=255)

   aTTTGCGGGCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTaca                                                                                        >  1:1414245‑M2/1‑88 (MQ=255)

      tGCCGGCACACTACAGTGCATGATGAACTTAATGCTTCAAATGTAAAAAAAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTacatcg                                                                                     >  2:3430759‑M2/1‑85 (MQ=255)

         gggCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTacatcgttg                                                                                  >  2:578885‑M2/1‑82 (MQ=255)

           gCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGcc                                                                                >  1:1281595/1‑91 (MQ=255)

           gCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGcc                                                                                >  2:747970/1‑91 (MQ=255)

           gCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGcc                                                                                <  1:2344948/91‑1 (MQ=255)

           gCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGcc                                                                                <  1:2218042/91‑1 (MQ=255)

            cTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCa                                                                               <  2:2033567/91‑1 (MQ=255)

            cTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCa                                                                               <  1:2927505/91‑1 (MQ=255)

             tCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCAt                                                                              <  1:3262315/91‑1 (MQ=255)

             tCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCAt                                                                              >  1:2035353/1‑91 (MQ=255)

             gcACTACAGTGCATGATGAACTTAATGCTTCAAAGGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCAt                                                                              <  2:2502512/90‑1 (MQ=255)

              gacgaCAGTGCATGCTGAAGGAAATCCTTCACCTGTAACCTTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCAtt                                                                             <  2:1821798/87‑1 (MQ=255)

               aCTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTa                                                                            <  2:3845110/91‑1 (MQ=255)

                cTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAg                                                                           >  1:3479623/1‑91 (MQ=255)

                cTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAg                                                                           <  1:3800243/91‑1 (MQ=255)

                 tACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGt                                                                          <  1:2991482/91‑1 (MQ=255)

                    aGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCt                                                                       >  1:1681214/1‑91 (MQ=255)

                     gTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTg                                                                      <  2:422474/91‑1 (MQ=255)

                       gCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGtt                                                                    <  1:136514/91‑1 (MQ=255)

                       gCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGtt                                                                    <  2:3304297/91‑1 (MQ=255)

                        cATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTg                                                                   <  1:231166/91‑1 (MQ=255)

                        cATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTg                                                                   >  1:2087097/1‑91 (MQ=255)

                         atgatgAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGa                                                                  <  1:3726601/91‑1 (MQ=255)

                          tgatgaACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGat                                                                 >  2:508595/1‑91 (MQ=255)

                          tgatgaACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGat                                                                 >  2:2581750/1‑91 (MQ=255)

                           gatgaACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGata                                                                >  2:2460131/1‑91 (MQ=255)

                             tgaACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATAtt                                                              <  1:2477998/91‑1 (MQ=255)

                             tgaACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATAtt                                                              <  1:3228446/91‑1 (MQ=255)

                             tgaACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATAtt                                                              <  1:206110/91‑1 (MQ=255)

                               aaCTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTc                                                            <  1:1158511/91‑1 (MQ=255)

                               aaCTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTc                                                            >  2:3697296/1‑91 (MQ=255)

                               aaCTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTc                                                            >  1:966977/1‑91 (MQ=255)

                                    aaTGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTa                                                       <  2:1824700/91‑1 (MQ=255)

                                     aTGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAg                                                      <  1:2625538/91‑1 (MQ=255)

                                     aTGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAg                                                      <  1:1589337/91‑1 (MQ=255)

                                      tGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGt                                                     >  1:3525494/1‑91 (MQ=255)

                                       gCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTc                                                    <  2:823760/91‑1 (MQ=255)

                                       gCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTc                                                    >  2:2783340/1‑91 (MQ=255)

                                        cTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACGTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCt                                                   <  2:12589/91‑1 (MQ=255)

                                          tCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTa                                                 <  2:1462905/91‑1 (MQ=255)

                                          tCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGATGCAATTAGTTCTGTTGATATTTCGGTTAGTCTTa                                                 >  1:2183903/1‑91 (MQ=255)

                                           cAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTaa                                                >  2:1515257/1‑91 (MQ=255)

                                           cAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTaa                                                >  2:2374049/1‑91 (MQ=255)

                                             aaTGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCTTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATc                                              >  1:3881833/1‑91 (MQ=255)

                                             aaTGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATc                                              >  2:271891/1‑91 (MQ=255)

                                             aaTGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATc                                              <  2:1887408/91‑1 (MQ=255)

                                              aTGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATcc                                             >  2:1977710/1‑91 (MQ=255)

                                               tGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATccc                                            >  2:2084644/1‑91 (MQ=255)

                                               tGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATccc                                            <  1:1822026/91‑1 (MQ=255)

                                                gTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATcccc                                           <  2:3592557/91‑1 (MQ=255)

                                                 tAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCg                                          >  2:1003650/1‑91 (MQ=255)

                                                 tAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCg                                          >  2:853578/1‑91 (MQ=255)

                                                  aaCATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGa                                         >  2:544929/1‑91 (MQ=255)

                                                    cATTAAAAATAAAAGCCACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTCCTGTTCAGATTTCGGTTAGCCTTAATCCCCgcgc                                       >  1:1845330/1‑91 (MQ=255)

                                                     aTTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCa                                      >  2:2258012/1‑91 (MQ=255)

                                                     aTTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCa                                      >  1:303096/1‑91 (MQ=255)

                                                        aaaaaTAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAAtt                                   >  1:1120827/1‑91 (MQ=255)

                                                          aaaTAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAAttct                                 <  2:1300640/91‑1 (MQ=255)

                                                          aaaTAAAAGCAACGATGTCACTCCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAAttct                                 >  2:2602880/1‑91 (MQ=255)

                                                           aaTAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAAttctt                                >  2:2102414/1‑91 (MQ=255)

                                                            aTAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAAttcttc                               >  1:2135479/1‑91 (MQ=255)

                                                              aaaaGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCaa                             >  1:3927672/1‑91 (MQ=255)

                                                               aaaGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAAt                            >  1:123713/1‑91 (MQ=255)

                                                               aaaGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAAt                            >  1:2249937/1‑91 (MQ=255)

                                                               aaaGCAACGATATCACTTCTTACGTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCAGTTAGTCTTAATCCCCGAGCAATTCTTCAAt                            <  2:3015484/91‑1 (MQ=255)

                                                                 aGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAAttt                          <  1:2743867/91‑1 (MQ=255)

                                                                 aGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAAttt                          <  1:765090/91‑1 (MQ=255)

                                                                  gCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTc                         >  2:3538669/1‑91 (MQ=255)

                                                                    aaCGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCAt                       <  1:937030/91‑1 (MQ=255)

                                                                    aaCGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCAt                       <  1:894847/91‑1 (MQ=255)

                                                                     aCGATGTCACTTCTTACTTCGTacatcgttgcttttatttttaatgttacatttgaagcattaagttcatcatgcactgtagtgagcccgc                      <  1:3616016‑M2/91‑70 (MQ=255)

                                                                     aCGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCAtt                      >  1:459405/1‑91 (MQ=255)

                                                                     aCGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCAtt                      <  1:630870/91‑1 (MQ=255)

                                                                     aCGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCAtt                      <  1:630192/91‑1 (MQ=255)

                                                                        aTGTCACTTCTTACTTCGTacatcgttgcttttatttttaatgttacatttgaagcattaagttcatcatgcactgtagtgagcccgcaaa                   <  1:1522473‑M2/91‑73 (MQ=255)

                                                                        aTGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCAttttt                   >  2:744618/1‑91 (MQ=255)

                                                                         tGTCACTTCTTACTTCGTacatcgttgcttttatttttaatgttacatttgaagcattaagttcatcatgcactgtagtgagcccgcaaat                  <  2:2641135‑M2/91‑74 (MQ=255)

                                                                         tGTCACTTCTTACTTCGTacatcgttgcttttatttttaatgttacatttgaagcattaagttcatcatgcactgtagtgagcccccaaat                  <  2:3199269‑M2/91‑74 (MQ=255)

                                                                         tGTCACTTCTTACTTCGTACATCGTTGCCATTAGTGCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTg                  <  2:1992088/91‑1 (MQ=255)

                                                                          gTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGa                 <  1:3016868/91‑1 (MQ=255)

                                                                          gTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTCTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGa                 >  1:3332519/1‑91 (MQ=255)

                                                                           tCACTTCTTACTTCGTacatcgttgcttttatttttaatgttacatgtgaagcattaagttcatcatgcactgtagtgagcccgcaaatcg                <  1:3144825‑M2/91‑76 (MQ=255)

                                                                           tCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGAt                <  2:1621168/91‑1 (MQ=255)

                                                                             aCTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATaa              <  2:2872719/91‑1 (MQ=255)

                                                                             aCTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATaa              >  2:2148219/1‑91 (MQ=255)

                                                                                tcttACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTg           <  1:337390/91‑1 (MQ=255)

                                                                                tcttACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTg           <  1:2018683/91‑1 (MQ=255)

                                                                                 cttACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGt          <  1:667390/91‑1 (MQ=255)

                                                                                 cttACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGt          <  2:2688373/91‑1 (MQ=255)

                                                                                  ttACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTa         >  2:1050050/1‑91 (MQ=255)

                                                                                     cTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACg      >  2:3117707/1‑91 (MQ=255)

                                                                                     cTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACg      >  2:1113647/1‑91 (MQ=255)

                                                                                      ttCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACGt     >  1:3489914/1‑91 (MQ=255)

                                                                                      ttCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACGt     >  2:2885167/1‑91 (MQ=255)

                                                                                        cGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACGTGa   >  2:1867399/1‑91 (MQ=255)

                                                                                        cGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACGTGa   >  1:1482351/1‑91 (MQ=255)

                                                                                         gTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACGTGAg  <  2:1517358/91‑1 (MQ=255)

GCGATTTGCGGGCTCACTACAGTGCATGATGAACTTAATGCTTCAAATGTAACATTAAAAATAAAAGCAACGATGTCACTTCTTACTTCGTACATCGTTGCCATTAGTTCTGTTGATATTTCGGTTAGTCTTAATCCCCGAGCAATTCTTCAATTTCATTTTTGATAACTGTAACGTGAG  >  USA300TCH1516_ALE/283965‑284144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.