BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	374491 =	163 (0.800)	12 (0.070)	6/144	NT	7.2%	intergenic (+109/+133)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein
*	?	USA300TCH1516_ALE	374527 =	162 (0.880)	12 (0.070)	6/144	NT	7.2%	intergenic (+145/+97)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein

Only 100 of 256 total aligned reads displayed.

CAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAAATAAT  >  USA300TCH1516_ALE/374437‑374617

cAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGt                                                                                            >  2:1904831/1‑91 (MQ=255)

 ggcgataAGGAGCAGCACGGTGGTGAATGTAAAAATAGTAAAGTGGAGGAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTa                                                                                           <  2:1685011/87‑1 (MQ=255)

 aGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTa                                                                                           <  1:756154/91‑1 (MQ=255)

 aGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTa                                                                                           >  2:2035350/1‑91 (MQ=255)

  gATATAAGTAGCATCACAGTATTGAATGTAAAAATAGTAAAGTAAAAAAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTAt                                                                                          <  2:338353/91‑1 (MQ=255)

   atatAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATc                                                                                         >  2:2077111/1‑91 (MQ=255)

     atatGTAGCATCACAGTGTTGAATTTACAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTTGCGAAAACTAAAGGGACAGCCGTCTCTg                                                                                       >  2:3393380/1‑91 (MQ=255)

     ataAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTg                                                                                       <  1:3051488/91‑1 (MQ=255)

     ataAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTg                                                                                       <  1:2923555/91‑1 (MQ=255)

       aaGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCCTTAGCGAAAACTAAAGGGACAGGCGTATCTGtt                                                                                     >  1:3506957/1‑91 (MQ=255)

       aaGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGtt                                                                                     <  2:2939254/91‑1 (MQ=255)

       aaGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGtt                                                                                     >  1:1730097/1‑91 (MQ=255)

         gTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTa                                                                                   >  2:2358968/1‑91 (MQ=255)

          tAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTAt                                                                                  <  1:2236142/91‑1 (MQ=255)

           aGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATg                                                                                 <  1:1509883/91‑1 (MQ=255)

           aGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATg                                                                                 >  2:3891727/1‑91 (MQ=255)

             cATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAg                                                                               >  1:667917/1‑91 (MQ=255)

              aTCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGc                                                                              <  1:2557415/91‑1 (MQ=255)

              aTCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGc                                                                              >  1:2441614/1‑91 (MQ=255)

               gcagaGTGTTGAATTTGAAAATAGTAGGGTGAAATAAAGCGCCTGTCTGATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCt                                                                             <  2:2622961/87‑1 (MQ=255)

                cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                                                            <  2:3313694/91‑1 (MQ=255)

                cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                                                            >  1:3084220/1‑91 (MQ=255)

                  caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                          >  2:2499273/1‑91 (MQ=255)

                  caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTATCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                          <  2:3476359/91‑1 (MQ=255)

                   aGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaat                                                                         <  1:3517123/91‑1 (MQ=255)

                      gtTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAGGGAACAGGCGTATCTGTTTATGAGCTTAATaaa                                                                      <  2:36810/91‑1 (MQ=255)

                       tttaaTTTAAAATTAGTAAAGTGAAATAACGCGCCTGTCTCATTAGCGAAATCTAAAGGGACTGGCGTGTCTGTTTATGAGCTTAATAAAt                                                                     <  1:1428705/88‑1 (MQ=255)

                       ttGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAt                                                                     <  1:227567/91‑1 (MQ=255)

                         gAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTg                                                                   >  2:1788724/1‑91 (MQ=255)

                           aTTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTa                                                                 >  2:1992739/1‑91 (MQ=255)

                              tAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGCAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTCTATGa                                                              >  2:364285/1‑91 (MQ=255)

                               aaaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaa                                                             <  1:2163462/91‑1 (MQ=255)

                                   aTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataat                                                         <  1:2654085/91‑1 (MQ=255)

                                    tAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAataata                                                        <  2:1384672/91‑1 (MQ=255)

                                    tAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAataata                                                        <  2:492440/91‑1 (MQ=255)

                                      gTAAAGTGAAATAACGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATg                                                      >  2:322052/1‑91 (MQ=255)

                                      gTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATg                                                      >  1:1373223/1‑91 (MQ=255)

                                       tAAAGTGAAATAAGGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATgg                                                     <  1:3957260/91‑1 (MQ=255)

                                        aaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGt                                                    >  2:2704922/1‑91 (MQ=255)

                                         aaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGCCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGtt                                                   >  1:3154802/1‑91 (MQ=255)

                                          aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                                                  <  1:1184721/91‑1 (MQ=255)

                                          aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                                                  >  2:2113047/1‑91 (MQ=255)

                                          aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                                                  <  1:2748940/91‑1 (MQ=255)

                                          aGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTg                                                  <  1:2529298/91‑1 (MQ=255)

                                              aaaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCg                                              <  2:685020/91‑1 (MQ=255)

                                              aaaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCg                                              >  2:103647/1‑91 (MQ=255)

                                              aaaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCg                                              <  1:487928/91‑1 (MQ=255)

                                               aaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGa                                             >  2:219486/1‑91 (MQ=255)

                                                aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa                                            <  2:558675/91‑1 (MQ=255)

                                                aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa                                            >  1:932688/1‑91 (MQ=255)

                                                aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa                                            >  1:2372291/1‑91 (MQ=255)

                                                 tAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAAt                                           <  1:1798602/91‑1 (MQ=255)

                                                  aaaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATa                                          <  2:881944/91‑1 (MQ=255)

                                                  aaaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATa                                          >  1:1846818/1‑91 (MQ=255)

                                                   aaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATaa                                         <  2:1359074/91‑1 (MQ=255)

                                                    aGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAAc                                        <  2:1897898/91‑1 (MQ=255)

                                                     gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt                                       >  1:1144166/1‑91 (MQ=255)

                                                     gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt                                       <  1:2103429/91‑1 (MQ=255)

                                                      CGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg                                      <  1:3261580‑M1/91‑1 (MQ=255)

                                                      CGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg                                      >  1:2329799‑M1/1‑91 (MQ=255)

                                                       GCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGt                                     >  1:3409926‑M1/1‑91 (MQ=255)

                                                        cctgtccctttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGtt                                    >  2:2270787‑M2/35‑91 (MQ=255)

                                                         CTGTCTCATTAGCTAAAACTAAAGGGACAGGCGTATCTGTTTAGGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGttt                                   >  1:3955218‑M1/1‑91 (MQ=255)

                                                         CTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGttt                                   >  1:2267032‑M1/1‑91 (MQ=255)

                                                          TGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTa                                  >  2:1523517‑M1/1‑91 (MQ=255)

                                                           gtccctttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTAt                                 >  1:3878533‑M2/32‑91 (MQ=255)

                                                           GTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTAt                                 >  2:1834078‑M1/1‑91 (MQ=255)

                                                           GTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTAt                                 <  1:1095763‑M1/91‑1 (MQ=255)

                                                            tccctttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATc                                >  2:1054630‑M2/31‑91 (MQ=255)

                                                            TCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATc                                <  2:378437‑M1/91‑1 (MQ=255)

                                                              cctttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCat                              >  2:1790710‑M2/29‑91 (MQ=255)

                                                              cctttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTAGCat                              >  1:3557465‑M2/29‑91 (MQ=255)

                                                                tttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatga                            >  2:146567‑M2/27‑91 (MQ=255)

                                                                aTTGGCGAATACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatca                            <  1:3555322/91‑3 (MQ=255)

                                                                 ttAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgat                           >  2:2451923/1‑91 (MQ=255)

                                                                  tAGCGAAAACTAACGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgatg                          >  2:1304170/1‑91 (MQ=255)

                                                                  tAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgatg                          >  1:3735482/1‑91 (MQ=255)

                                                                   aGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCAtgatga                         <  1:1035562/91‑1 (MQ=255)

                                                                   aGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCAtgatga                         <  1:1034363/91‑1 (MQ=255)

                                                                   aGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCAtgatga                         <  1:1401866/91‑1 (MQ=255)

                                                                     cGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATa                       >  1:1577655/1‑91 (MQ=255)

                                                                     cGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGACGATa                       >  2:458616/1‑91 (MQ=255)

                                                                        aaaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAt                    >  1:3367389/1‑91 (MQ=255)

                                                                          aCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTg                  <  1:632217/91‑1 (MQ=255)

                                                                          aCTAAAGGGACAGGCGTATCGGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTg                  <  2:263717/91‑1 (MQ=255)

                                                                           cTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGa                 <  1:1141795/91‑1 (MQ=255)

                                                                            tAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAg                >  2:1273144/1‑91 (MQ=255)

                                                                             aaaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGt               >  2:2680300/1‑91 (MQ=255)

                                                                              aaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtt              >  1:1468183/1‑91 (MQ=255)

                                                                               aGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGttt             >  2:1612216/1‑91 (MQ=255)

                                                                               aGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGttt             >  1:1288335/1‑91 (MQ=255)

                                                                                gggACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtttt            <  1:1328686/91‑1 (MQ=255)

                                                                                 gtacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGttttt           <  2:2723891‑M2/82‑1 (MQ=255)

                                                                                  gacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtttttt          <  2:2828486‑M2/83‑1 (MQ=255)

                                                                                    caggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaa        >  1:3007266‑M2/7‑91 (MQ=255)

                                                                                     aggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaaa       >  1:201615‑M2/6‑91 (MQ=255)

                                                                                      ggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaaaa      <  1:1949766‑M2/87‑1 (MQ=255)

                                                                                       gcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaat     >  1:2677734‑M2/4‑91 (MQ=255)

                                                                                         gTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataa   <  1:3326589‑M2/90‑1 (MQ=255)

                                                                                          tATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataat  <  2:1709792/91‑1 (MQ=255)

CAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAAATAAT  >  USA300TCH1516_ALE/374437‑374617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.