BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 422512	250 (1.230)	14 (0.080)	8/136	NT	6.1%	coding (581/612 nt)	USA300HOU_RS01965	hypothetical protein
*	?	USA300TCH1516_ALE	= 422533	216 (1.250)	14 (0.080)	8/136	NT	6.1%	coding (602/612 nt)	USA300HOU_RS01965	hypothetical protein

Only 100 of 322 total aligned reads displayed.

AGCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGCTTTCTTT  >  USA300TCH1516_ALE/422443‑422623

agCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGa                                                                                            <  1:35830/91‑1 (MQ=255)

agCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGa                                                                                            <  2:3222140/91‑1 (MQ=255)

 gCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAa                                                                                           <  1:237449‑M2/91‑2 (MQ=255)

 gCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAa                                                                                           <  1:1698108‑M2/91‑2 (MQ=255)

  cTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAac                                                                                          <  1:2830175‑M2/91‑3 (MQ=255)

  cTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAac                                                                                          >  2:2778780‑M2/1‑89 (MQ=255)

  cTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAac                                                                                          <  1:2976433‑M2/91‑3 (MQ=255)

  cTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAac                                                                                          <  1:3119789‑M2/91‑3 (MQ=255)

   tACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAaca                                                                                         >  1:3659552‑M2/1‑88 (MQ=255)

   tACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAaca                                                                                         >  2:784218‑M2/1‑88 (MQ=255)

   aacAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAaca                                                                                         >  2:1100800‑M2/2‑88 (MQ=255)

        aaaGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagttt                                                                                    >  2:3704321‑M2/1‑83 (MQ=255)

        aaaGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagttt                                                                                    <  2:467659‑M2/91‑9 (MQ=255)

         aaGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttg                                                                                   <  2:1213249‑M2/91‑10 (MQ=255)

         aaGATAGGGAAAATGTAAAAATTAATACAGATGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttg                                                                                   >  2:2359719‑M2/1‑82 (MQ=255)

          aGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttga                                                                                  >  2:3554444‑M2/1‑81 (MQ=255)

           gATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttgaa                                                                                 <  1:1227162‑M2/91‑12 (MQ=255)

           gATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttgaa                                                                                 <  1:272056‑M2/91‑12 (MQ=255)

            aTAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttgaaa                                                                                <  2:880140‑M2/91‑13 (MQ=255)

            aTAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttgaaa                                                                                <  2:1961900‑M2/91‑13 (MQ=255)

             tAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAt                                                                               <  2:2593060/91‑1 (MQ=255)

             tAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAt                                                                               >  2:3650870/1‑91 (MQ=255)

             tAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAt                                                                               >  1:3799743/1‑91 (MQ=255)

              aGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAtt                                                                              >  2:3608947/1‑91 (MQ=255)

              aGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAtt                                                                              >  1:3179746/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  1:699391/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  2:3120913/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  1:344499/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  1:1171392/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGCTTGAAATTa                                                                             >  1:3547918/1‑91 (MQ=255)

                  aaaaTGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGc                                                                          <  2:2391527/91‑1 (MQ=255)

                  aaaaTGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGc                                                                          <  2:668684/91‑1 (MQ=255)

                    aaTGTAAAAATTAATACAGCTTATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTa                                                                        <  2:130776/91‑1 (MQ=255)

                    aaTGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTa                                                                        <  1:1066291/91‑1 (MQ=255)

                    aaTGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTa                                                                        <  1:3924759/91‑1 (MQ=255)

                    aaTGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTa                                                                        >  1:548968/1‑91 (MQ=255)

                      tGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTaaa                                                                      >  2:3484126/1‑91 (MQ=255)

                       gTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAAt                                                                     <  1:1012582/91‑1 (MQ=255)

                       gTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAAt                                                                     >  1:3761575/1‑91 (MQ=255)

                         aaaaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTa                                                                   >  1:3726102/1‑91 (MQ=255)

                         aaaaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTa                                                                   >  1:2614674/1‑91 (MQ=255)

                         aaaaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTa                                                                   >  1:1783787/1‑91 (MQ=255)

                          aaaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAg                                                                  >  1:3041182/1‑91 (MQ=255)

                           aaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGt                                                                 <  1:606333/91‑1 (MQ=255)

                           aaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGt                                                                 <  2:112973/91‑1 (MQ=255)

                            aaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGGCATTGAACAAGTTTGAAATTAAGCTAAATTAGta                                                                <  2:1608600/91‑1 (MQ=255)

                            aaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGta                                                                >  2:1387865/1‑91 (MQ=255)

                            aaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTGGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGta                                                                <  2:3457026/91‑1 (MQ=255)

                                 aTACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGTTGAATTAGtatatac                                                           >  2:3933524/1‑90 (MQ=255)

                                  tACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGtatatata                                                          <  2:3306101/91‑1 (MQ=255)

                                   aCAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAg                                                         >  2:1264567/1‑91 (MQ=255)

                                     aGCCGATATAAAAAATGTAACTTTCAAGCTTGTGAAAAGTGTTAATGTCATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAgtg                                                       <  2:1690615/91‑1 (MQ=255)

                                     aGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAgtg                                                       <  2:1442144/91‑1 (MQ=255)

                                      gCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAgtgt                                                      >  1:2461894/1‑91 (MQ=255)

                                      gCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAgtgt                                                      <  2:2366542/91‑1 (MQ=255)

                                      gCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAgtgt                                                      >  2:2435607/1‑91 (MQ=255)

                                      gCCGATATAAAAAATGTAACTTTCAAACTTGAGAAAAGTGTTAATGACATTGAACAAGTTTGAAAGTAAGCTAAATTAGTATATATAatgt                                                      <  2:3261691/91‑1 (MQ=255)

                                       ccGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGtt                                                     >  1:935574/1‑91 (MQ=255)

                                        cGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGttt                                                    <  1:406900/91‑1 (MQ=255)

                                           tataAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTAt                                                 >  2:2045103/1‑91 (MQ=255)

                                              aaaaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGc                                              <  2:2181206/91‑1 (MQ=255)

                                              aaaaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGc                                              <  1:1667982/91‑1 (MQ=255)

                                              aaaaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGc                                              <  2:226836/91‑1 (MQ=255)

                                               aaaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCt                                             >  1:1302831/1‑91 (MQ=255)

                                                aaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTa                                            >  2:2877414/1‑91 (MQ=255)

                                                aaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTa                                            >  1:2697456/1‑91 (MQ=255)

                                                 aaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTaa                                           >  1:3338254/1‑91 (MQ=255)

                                                  aaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAAt                                          >  2:2699431/1‑91 (MQ=255)

                                                    tGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATAc                                        <  1:149300/91‑1 (MQ=255)

                                                     gTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACt                                       <  2:1059238/91‑1 (MQ=255)

                                                     gTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACt                                       <  1:2677954/91‑1 (MQ=255)

                                                      tAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACtt                                      <  2:2940845/91‑1 (MQ=255)

                                                           ttCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatc                                 <  1:2545554‑M2/91‑60 (MQ=255)

                                                             cAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGt                               >  1:2260137/1‑91 (MQ=255)

                                                             cAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGt                               <  2:419945/91‑1 (MQ=255)

                                                               aaCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTa                             >  1:2483150/1‑91 (MQ=255)

                                                                aCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAg                            >  1:2067953/1‑91 (MQ=255)

                                                                 cTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAgg                           <  1:433693/91‑1 (MQ=255)

                                                                  ttGTGAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgt                          <  1:1331344‑M2/91‑67 (MQ=255)

                                                                  ttGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGt                          >  1:2859061/1‑91 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgta                         <  2:183647‑M2/91‑68 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTa                         >  2:1742932/1‑91 (MQ=255)

                                                                    gtgAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTAt                        >  2:2092505/1‑91 (MQ=255)

                                                                    gtgAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTAt                        <  2:3765035/91‑1 (MQ=255)

                                                                       aaaaGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTa                     >  2:3533192/1‑91 (MQ=255)

                                                                         aaGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTaaa                   >  1:897883/1‑91 (MQ=255)

                                                                            tgtTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGt                >  2:3396367/1‑91 (MQ=255)

                                                                             gtTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTg               <  1:1428132/91‑1 (MQ=255)

                                                                              ttAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGc              >  1:2175623/1‑91 (MQ=255)

                                                                                aaTGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTGAAGGTGCCt            <  1:1979942/91‑1 (MQ=255)

                                                                                aaTGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCt            <  1:2393459/91‑1 (MQ=255)

                                                                                 aTGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTa           <  1:3052847/91‑1 (MQ=255)

                                                                                  tGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAg          >  2:808656/1‑91 (MQ=255)

                                                                                   gACATTGAACAAGTTTGAAATTAAGCTAGATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGc         <  2:525906/91‑1 (MQ=255)

                                                                                   gACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGc         <  2:2211076/91‑1 (MQ=255)

                                                                                    aCATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGct        <  1:155625/91‑1 (MQ=255)

                                                                                     cATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctt       >  1:779707/1‑91 (MQ=255)

                                                                                         gAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttctt   <  2:3852616/91‑1 (MQ=255)

                                                                                         gAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttctt   <  2:1491145/91‑1 (MQ=255)

                                                                                          aaCAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttcttt  >  1:1107962/1‑91 (MQ=255)

AGCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGCTTTCTTT  >  USA300TCH1516_ALE/422443‑422623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.