BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	494152 =	141 (0.690)	12 (0.070)	6/142	NT	8.9%	intergenic (+101/+68)	bltD_1/USA300HOU_RS02360	Spermine/spermidine acetyltransferase/hypothetical protein
*	?	USA300TCH1516_ALE	494194 =	120 (0.660)	12 (0.070)	6/142	NT	8.9%	intergenic (+143/+26)	bltD_1/USA300HOU_RS02360	Spermine/spermidine acetyltransferase/hypothetical protein

Only 100 of 206 total aligned reads displayed.

ATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATC  >  USA300TCH1516_ALE/494104‑494283

aTAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGctta                                                                                           <  2:1866534/91‑1 (MQ=255)

 tAAAGGTGCTTTTTTTTTTATATTATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaa                                                                                          >  2:3694960/1‑91 (MQ=255)

 tAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaa                                                                                          <  2:1979411/91‑1 (MQ=255)

  aaaGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaac                                                                                         >  1:1012875/1‑91 (MQ=255)

    aGGTGGTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaactt                                                                                       <  2:3210461/91‑1 (MQ=255)

     ggTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaactta                                                                                      >  2:2146686/1‑91 (MQ=255)

     ggTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaactta                                                                                      >  1:2105499/1‑91 (MQ=255)

     ggTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaactta                                                                                      >  2:3215304/1‑91 (MQ=255)

      gTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGcttaacttaa                                                                                     >  1:218579/1‑91 (MQ=255)

         cTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGtt                                                                                  >  1:695193/1‑91 (MQ=255)

         cTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGtt                                                                                  <  1:584394/91‑1 (MQ=255)

            tttGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTtata                                                                               <  1:3741827/91‑1 (MQ=255)

             ttGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTatat                                                                              <  1:3815315/91‑1 (MQ=255)

              tGTTATAGATCATCGGACAATTTACTATACTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATAtt                                                                             <  1:3174860/91‑1 (MQ=255)

               gTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTg                                                                            <  2:3350725/91‑1 (MQ=255)

                ttATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGc                                                                           <  2:2565335/91‑1 (MQ=255)

                ttATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGc                                                                           <  1:3736157/91‑1 (MQ=255)

                   taGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAg                                                                        >  1:1638994/1‑91 (MQ=255)

                   taGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAg                                                                        >  1:364944/1‑91 (MQ=255)

                   taGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAg                                                                        >  1:709032/1‑91 (MQ=255)

                   taGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAg                                                                        >  1:175496/1‑91 (MQ=255)

                      atcatcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTg                                                                     <  2:2055982/91‑1 (MQ=255)

                       tcatcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGc                                                                    <  2:1185344/91‑1 (MQ=255)

                         atcGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGa                                                                  <  2:2638770/91‑1 (MQ=255)

                           cGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGAtt                                                                <  2:2651060/91‑1 (MQ=255)

                            ggACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTa                                                               <  1:657803/91‑1 (MQ=255)

                            ggACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTa                                                               <  1:429858/91‑1 (MQ=255)

                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAt                                                             >  2:2938566/1‑91 (MQ=255)

                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAt                                                             >  1:542862/1‑91 (MQ=255)

                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAt                                                             <  1:3930786/91‑1 (MQ=255)

                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAt                                                             >  2:2810942/1‑91 (MQ=255)

                              aCAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATAAAt                                                             <  2:346292/91‑1 (MQ=255)

                               cAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAAtt                                                            >  2:2535836/1‑91 (MQ=255)

                                 aTTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGa                                                          >  2:2739935/1‑91 (MQ=255)

                                  tttACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGAt                                                         <  2:1984047/91‑1 (MQ=255)

                                   ttACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATa                                                        >  1:3434355/1‑91 (MQ=255)

                                   tgaCTAGAGTAAAAAGCGACCTAGTGGACAATGGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATa                                                        <  2:1578824/89‑1 (MQ=255)

                                     aCTATAGTAAAAAGCGACCTAGTGAACAATTGGCATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGa                                                      <  2:2156597/91‑1 (MQ=255)

                                      cTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGAc                                                     >  1:1833012/1‑91 (MQ=255)

                                       tataGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACt                                                    >  1:3471979/1‑91 (MQ=255)

                                        ataGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtc                                                   <  2:472447/91‑1 (MQ=255)

                                         taGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtca                                                  <  1:2660751/91‑1 (MQ=255)

                                          aGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtcat                                                 <  1:3083571/91‑1 (MQ=255)

                                           gTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtcatc                                                >  1:2497017/1‑91 (MQ=255)

                                           gTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtcatc                                                >  2:2280372/1‑91 (MQ=255)

                                            tAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACtcatca                                               <  2:3891960/91‑1 (MQ=255)

                                             aaaaaGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTcatcat                                              >  1:1251116/1‑91 (MQ=255)

                                               aaaGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAttt                                            <  1:2908369/91‑1 (MQ=255)

                                                AAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtttt                                           <  1:809858‑M1/91‑1 (MQ=255)

                                                AAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtttt                                           <  2:2453651‑M1/91‑1 (MQ=255)

                                                AAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtttt                                           >  2:167672‑M1/1‑91 (MQ=255)

                                                AAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCAtttt                                           <  1:2612963‑M1/91‑1 (MQ=255)

                                                    GACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                       <  2:527796‑M1/91‑1 (MQ=255)

                                                    GACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                       <  2:1440002‑M1/91‑1 (MQ=255)

                                                    GACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                       <  1:911171‑M1/91‑1 (MQ=255)

                                                    GACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                       >  1:2024922‑M1/1‑91 (MQ=255)

                                                    GACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                       <  2:3952728‑M1/91‑1 (MQ=255)

                                                    GACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                       >  1:14548‑M1/1‑91 (MQ=255)

                                                    GACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcg                                       <  1:1223431‑M1/91‑1 (MQ=255)

                                                     ACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTgcgc                                      <  1:2209680‑M1/91‑1 (MQ=255)

                                                      cctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCt                                     >  1:2980676‑M2/37‑91 (MQ=255)

                                                      cctgtggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCt                                     >  1:2360184‑M2/37‑91 (MQ=255)

                                                       CTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTg                                    <  2:2830143‑M1/91‑1 (MQ=255)

                                                        TAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGt                                   <  2:285069‑M1/91‑1 (MQ=255)

                                                        TAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGt                                   <  1:2746222‑M1/91‑1 (MQ=255)

                                                          tggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCg                                 >  1:3898876‑M2/33‑91 (MQ=255)

                                                          gTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCg                                 <  2:3394495/91‑1 (MQ=255)

                                                           ggatatatgtcaattgttcactaggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCga                                >  1:141799‑M2/32‑91 (MQ=255)

                                                            gAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCgag                               >  1:3863809/1‑91 (MQ=255)

                                                            gAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCgag                               >  1:3204865/1‑91 (MQ=255)

                                                             aaCAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCgaga                              <  1:2038247/91‑1 (MQ=255)

                                                               cAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATg                            <  2:2415226/91‑1 (MQ=255)

                                                                   tGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCt                        >  2:691652/1‑91 (MQ=255)

                                                                    gACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCtt                       >  2:2461190/1‑91 (MQ=255)

                                                                    gACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCtt                       >  1:1351022/1‑91 (MQ=255)

                                                                     aCATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCttt                      >  2:113691/1‑91 (MQ=255)

                                                                     aCATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCttt                      >  2:114224/1‑91 (MQ=255)

                                                                      cATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCtttt                     >  2:290040/1‑91 (MQ=255)

                                                                      cATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCtttt                     >  2:297585/1‑91 (MQ=255)

                                                                         atatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttat                  >  2:936785/1‑91 (MQ=255)

                                                                         atatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttat                  >  1:1913644/1‑91 (MQ=255)

                                                                         atatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttat                  <  2:1833490/91‑1 (MQ=255)

                                                                         atatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttat                  <  2:1833238/91‑1 (MQ=255)

                                                                         atatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttat                  <  1:2261036/91‑1 (MQ=255)

                                                                         atatCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTttat                  <  2:3752333/91‑1 (MQ=255)

                                                                            tCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaa               >  2:3101367/1‑91 (MQ=255)

                                                                            tCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaa               <  1:3017647/91‑1 (MQ=255)

                                                                              cacaGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTaaaa             >  1:2083303/1‑91 (MQ=255)

                                                                                caGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAAt           >  2:3827948/1‑91 (MQ=255)

                                                                                 aggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGTTCTTTCGAGATGGTCTTTTTATTAAAAATg          >  2:2216290‑M2/10‑91 (MQ=255)

                                                                                 aggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATg          >  1:3609647‑M2/10‑91 (MQ=255)

                                                                                  ggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGc         >  1:3056998‑M2/9‑91 (MQ=255)

                                                                                  ggtcgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGc         >  2:2731325‑M2/9‑91 (MQ=255)

                                                                                     cgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGt      >  1:1434458‑M2/6‑91 (MQ=255)

                                                                                     cgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGt      <  2:2610816‑M2/86‑1 (MQ=255)

                                                                                     cgcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAACGCCGt      >  1:3683356‑M2/6‑91 (MQ=255)

                                                                                     cgcttAACTTAAGGTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGt      <  2:2129317‑M2/86‑1 (MQ=255)

                                                                                      gcttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTa     <  1:3299401‑M2/87‑1 (MQ=255)

                                                                                       cttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTaa    >  2:1500705‑M2/4‑91 (MQ=255)

                                                                                       cttAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTaa    >  2:918936‑M2/4‑91 (MQ=255)

ATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTAGTGAACAATTGACATATATCCACAGGTCGCTTAACTTAAGTTATATTGCTAGTTGCGATTAATTGATAGACTCATCATTTTTGCGCTGTCGAGATGGTCTTTTTATTAAAAATGCCGTAATC  >  USA300TCH1516_ALE/494104‑494283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.