BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	523897 =	126 (0.620)	11 (0.070)	8/130	NT	9.1%	coding (308/726 nt)	yfiC	tRNA1(Val) (adenine(37)‑N6)‑methyltransferase
*	?	USA300TCH1516_ALE	523942 =	117 (0.710)	11 (0.070)	8/130	NT	9.1%	coding (353/726 nt)	yfiC	tRNA1(Val) (adenine(37)‑N6)‑methyltransferase

Only 100 of 227 total aligned reads displayed.

ATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACTTGA  >  USA300TCH1516_ALE/523852‑524032

atgatgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACgtg                                                                                            >  1:661207/1‑91 (MQ=255)

atgatgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACgtg                                                                                            <  1:632332/91‑1 (MQ=255)

atgatgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACgtg                                                                                            >  2:2191166/1‑91 (MQ=255)

atgatgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACgtg                                                                                            <  1:1841604/91‑1 (MQ=255)

  gatgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTa                                                                                          <  2:2107145/91‑1 (MQ=255)

    tgTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAAt                                                                                        <  1:37072/91‑1 (MQ=255)

         atgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGcc                                                                                   <  1:376720/91‑1 (MQ=255)

          ttaaTTTTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAATCCTTCACTATATACTTTAGTGACTTGTAATCCGCCt                                                                                  <  1:1903746/89‑1 (MQ=255)

          tgaATATTTAACAATGCATCACATGTATTTGAAAAACGTTACTAAAGTATTTAAGCCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                                  <  2:600159/91‑1 (MQ=255)

          tgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                                  >  1:3099010/1‑91 (MQ=255)

          tgaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                                  <  1:2620020/91‑1 (MQ=255)

          tgaATATTTAACAATGCATCAAATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                                  <  2:1683376/91‑1 (MQ=255)

          tgaATATGTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCt                                                                                  <  2:3507001/91‑1 (MQ=255)

           gaATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCtt                                                                                 >  1:486983/1‑91 (MQ=255)

               atTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTAttt                                                                             <  2:1222311/91‑1 (MQ=255)

               atTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTAttt                                                                             >  1:2639327/1‑91 (MQ=255)

                 ttAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTa                                                                           >  2:1385758/1‑91 (MQ=255)

                 ttAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTa                                                                           <  2:1552079/91‑1 (MQ=255)

                 ttAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTa                                                                           <  2:2045442/91‑1 (MQ=255)

                 ttAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTa                                                                           <  1:2211039/91‑1 (MQ=255)

                    aCAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAag                                                                        <  2:2533536/91‑1 (MQ=255)

                    aCAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAag                                                                        >  2:3410560/1‑91 (MQ=255)

                    aCAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAag                                                                        >  2:2858233/1‑91 (MQ=255)

                     cAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAaga                                                                       >  1:2076395/1‑91 (MQ=255)

                     cAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAaga                                                                       >  2:1836991/1‑91 (MQ=255)

                      aaTGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAagag                                                                      <  2:3703798/91‑1 (MQ=255)

                      aaTGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAagag                                                                      <  1:534092/91‑1 (MQ=255)

                      aaTGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAagag                                                                      >  2:3216180/1‑91 (MQ=255)

                      aaTGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTACACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAagag                                                                      >  2:3845699/1‑91 (MQ=255)

                       aTGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAgaga                                                                     <  1:2395594/91‑1 (MQ=255)

                         gCATCACATGGATTTGAAAAACGTTTCTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAAt                                                                   <  1:2902502/91‑1 (MQ=255)

                         gCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAAt                                                                   >  1:3650336/1‑91 (MQ=255)

                         gCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAAt                                                                   <  2:2012356/91‑1 (MQ=255)

                         gCATCACATGGATTTGAAAAACGTTACTAAAGCATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCGTATTTTAAAGAGAAt                                                                   <  1:3375054/91‑1 (MQ=255)

                             cacaTGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGc                                                               <  2:3769960/91‑1 (MQ=255)

                              acaTGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCa                                                              >  1:2585364/1‑91 (MQ=255)

                               caTGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCaa                                                             <  1:554166/91‑1 (MQ=255)

                               caTGAATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCaa                                                             >  2:1261828/1‑91 (MQ=255)

                                aTGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAac                                                            <  2:1796007/91‑1 (MQ=255)

                                    aTTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCa                                                        <  1:2537042/91‑1 (MQ=255)

                                    aTTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCa                                                        >  1:2716970/1‑91 (MQ=255)

                                      ttGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAAc                                                      <  2:2306600/91‑1 (MQ=255)

                                      ttGAAAAACGTTACTAAAGTATTTAAACCTCCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGAAACACCAAc                                                      <  2:2631587/91‑1 (MQ=255)

                                        gAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACAt                                                    <  1:2084090/91‑1 (MQ=255)

                                          aaaaCGTTACTAGAGTATTTGAACCTTCACAATATACTTTATTAACGTGTAATCCGCCTTATTTTAAAGTGAATTAGCAACACCAACATCa                                                  <  2:1715306/91‑1 (MQ=255)

                                           aaaCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaa                                                 <  1:85558/91‑1 (MQ=255)

                                           aaaCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaa                                                 >  2:61312/1‑91 (MQ=255)

                                            aaCGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaa                                                >  2:444225/1‑91 (MQ=255)

                                             ACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaa                                               <  2:2853012‑M1/91‑1 (MQ=255)

                                             ACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaa                                               <  1:686927‑M1/91‑1 (MQ=255)

                                              CGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaaa                                              >  2:710465‑M1/1‑91 (MQ=255)

                                              CGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaaa                                              >  1:2050865‑M1/1‑91 (MQ=255)

                                              CGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCaaaaa                                              <  1:3250034‑M1/91‑1 (MQ=255)

                                                TTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaaga                                            >  1:3396891‑M1/1‑91 (MQ=255)

                                                 TACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaagaa                                           <  1:919247‑M1/91‑1 (MQ=255)

                                                  actaaagtatattgtgaaggtttaaatactttagtaacgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACCTCAAAaagaag                                          >  1:3580110‑M2/41‑91 (MQ=255)

                                                  ACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaagaag                                          <  1:10208‑M1/91‑1 (MQ=255)

                                                  ACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAaagaag                                          <  1:1069856‑M1/91‑1 (MQ=255)

                                                  ACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATCTTAAAGAGAATCAGCAACACCAACATCAAAaagaag                                          <  1:178871‑M1/91‑1 (MQ=255)

                                                    TAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGca                                        >  2:2688731‑M1/1‑91 (MQ=255)

                                                    TAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGca                                        <  2:3341065‑M1/91‑1 (MQ=255)

                                                     aaagtatattgtgaaggtttaaatactttggtaacgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGcac                                       >  1:1812927‑M2/38‑91 (MQ=255)

                                                     AAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGcac                                       >  1:3325430‑M1/1‑91 (MQ=255)

                                                     AAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGcac                                       >  1:3273998‑M1/1‑91 (MQ=255)

                                                      AAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGcaca                                      <  2:2491548‑M1/91‑1 (MQ=255)

                                                       AGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACAt                                     >  1:3505483‑M1/1‑91 (MQ=255)

                                                       AGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACAt                                     >  1:2476065‑M1/1‑91 (MQ=255)

                                                        GTATTCAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACAACAAAAAGAAGCACATa                                    >  2:3651266‑M1/1‑91 (MQ=255)

                                                           TTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGa                                 >  1:573149‑M1/1‑91 (MQ=255)

                                                            ttAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGAt                                <  2:2911645/91‑1 (MQ=255)

                                                            attgtgaaggtttaaatactttagtaacgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGAt                                >  2:1037265‑M2/31‑91 (MQ=255)

                                                             tAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATa                               >  2:1967143/1‑91 (MQ=255)

                                                             tAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATa                               >  1:2975641/1‑91 (MQ=255)

                                                             tAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATa                               >  2:2395476/1‑91 (MQ=255)

                                                               gtgaaggtttaaatactttagtaacgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGc                             >  1:2857882‑M2/28‑91 (MQ=255)

                                                               aaCCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGc                             >  2:3596557/1‑91 (MQ=255)

                                                               aaCCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGc                             <  1:3843432/91‑1 (MQ=255)

                                                               aaCCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGc                             >  1:2928223/1‑91 (MQ=255)

                                                                aCCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCg                            <  1:2867979/91‑1 (MQ=255)

                                                                 ccTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCga                           >  2:1401349/1‑91 (MQ=255)

                                                                   ttCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCgaga                         <  1:1131397/91‑1 (MQ=255)

                                                                   ttCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCgaga                         >  1:1658311/1‑91 (MQ=255)

                                                                    tCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGAc                        >  2:1900964/1‑91 (MQ=255)

                                                                     cacaATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACa                       <  1:3222345/91‑1 (MQ=255)

                                                                      acaATATACTTTAGTAACGTGTAATCCGCCTGATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATCAGATAGCGAGACAt                      <  1:2967110/91‑1 (MQ=255)

                                                                       caATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATg                     >  2:1412500/1‑91 (MQ=255)

                                                                        aaTATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATga                    <  2:3868023/91‑1 (MQ=255)

                                                                          tataCTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATgaga                  <  1:3645826/91‑1 (MQ=255)

                                                                            tactttagtaacgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGAtt                >  2:1583291‑M2/15‑91 (MQ=255)

                                                                             actttagtaacgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTa               >  1:1114585‑M2/14‑91 (MQ=255)

                                                                                 tagtaacgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTAtgtg           >  1:85046‑M2/10‑91 (MQ=255)

                                                                                      acgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTacac      >  1:1750266‑M2/5‑91 (MQ=255)

                                                                                      acgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTacac      >  2:2382596‑M2/5‑91 (MQ=255)

                                                                                       cgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACt     <  2:145133‑M2/88‑1 (MQ=255)

                                                                                       cgtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACt     <  1:3933948‑M2/88‑1 (MQ=255)

                                                                                        gtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACtt    <  1:1733498‑M2/89‑1 (MQ=255)

                                                                                        gtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACtt    <  1:1615058‑M2/89‑1 (MQ=255)

                                                                                        gtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACtt    >  2:319462‑M2/3‑91 (MQ=255)

                                                                                        gtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACtt    >  1:2335678‑M2/3‑91 (MQ=255)

                                                                                        gtGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACtt    <  2:2159920‑M2/89‑1 (MQ=255)

ATGATGTTGATGAATATTTAACAATGCATCACATGGATTTGAAAAACGTTACTAAAGTATTTAAACCTTCACAATATACTTTAGTAACGTGTAATCCGCCTTATTTTAAAGAGAATCAGCAACACCAACATCAAAAAGAAGCACATAAGATAGCGAGACATGAGATTATGTGTACACTTGA  >  USA300TCH1516_ALE/523852‑524032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.