New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 580739 =140 (0.690)16 (0.100) 8/130 NT 11.7% intergenic (+33/‑48) USA300HOU_RS02805/sigH hypothetical protein/RNA polymerase sigma‑H factor
?USA300TCH1516_ALE 580788 = 129 (0.780)coding (2/570 nt) sigH RNA polymerase sigma‑H factor

Only 100 of 250 total aligned reads displayed.

AAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTAC  >  USA300TCH1516_ALE/580698‑580877
                                                                                          |                                                                                         
  gAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTATATAGAAGGGGTTAGTTTAATATTTGa                                                                                         <  2:3277606/91‑1 (MQ=255)
  gAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGa                                                                                         <  1:1069080/91‑1 (MQ=255)
   aaaTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGaa                                                                                        <  2:2376772/91‑1 (MQ=255)
   aaaTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGaa                                                                                        >  2:2714318/1‑91 (MQ=255)
    aaTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGaaa                                                                                       <  2:1769880/91‑1 (MQ=255)
     aTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                      <  1:519326/91‑1 (MQ=255)
     aTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                      <  2:1873785/91‑1 (MQ=255)
     aTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                      >  1:2808312/1‑91 (MQ=255)
      tGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATa                                                                                     >  2:3734375/1‑91 (MQ=255)
      tGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATa                                                                                     <  1:3605977/91‑1 (MQ=255)
       gACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATAc                                                                                    >  1:1728181/1‑91 (MQ=255)
        aCATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACg                                                                                   <  1:2924468/91‑1 (MQ=255)
        aCATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACg                                                                                   >  1:2290495/1‑91 (MQ=255)
        aCATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACg                                                                                   >  1:224735/1‑91 (MQ=255)
         cATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGa                                                                                  >  2:1590703/1‑91 (MQ=255)
          aTTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTATTATTTGAAATACGAt                                                                                 <  2:591105/91‑1 (MQ=255)
          aTTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGAt                                                                                 <  2:2785180/91‑1 (MQ=255)
           tttCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGAtt                                                                                >  2:2571928/1‑91 (MQ=255)
             tCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTg                                                                              >  1:266526/1‑91 (MQ=255)
               cGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGAc                                                                            <  1:2656612/91‑1 (MQ=255)
                   aTCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACt                                                                        >  2:1133630/1‑91 (MQ=255)
                    tCTTGAAAATTTGAATGTAACAATAATAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTc                                                                       <  2:3431116/91‑1 (MQ=255)
                     cTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCa                                                                      <  1:1906819/91‑1 (MQ=255)
                      ttGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCaa                                                                     >  2:429750/1‑91 (MQ=255)
                        gAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGa                                                                   >  1:1372840/1‑91 (MQ=255)
                        gAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGa                                                                   >  2:3589591/1‑91 (MQ=255)
                         aaaTTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGAc                                                                  <  1:977647/91‑1 (MQ=255)
                         aaaTTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGAc                                                                  >  2:2045984/1‑91 (MQ=255)
                            ttttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGt                                                               <  2:53751/91‑1 (MQ=255)
                            ttttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGt                                                               <  1:1648660/91‑1 (MQ=255)
                             tttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTa                                                              >  2:3952716/1‑91 (MQ=255)
                              ttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTAc                                                             <  1:3094712/91‑1 (MQ=255)
                               tGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACa                                                            >  2:1744433/1‑91 (MQ=255)
                                 aaTGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAAt                                                          >  1:1181500/1‑91 (MQ=255)
                                 aaTGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAAt                                                          <  1:1922280/91‑1 (MQ=255)
                                 aaTGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGCTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAAt                                                          <  1:3160912/91‑1 (MQ=255)
                                  tatttcaaatattaaactaaccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAATTCAAGACAGTACAATc                                                         >  2:3041195‑M2/57‑91 (MQ=255)
                                  aTGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATc                                                         <  1:3233326/91‑1 (MQ=255)
                                     tAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCaaa                                                      >  1:859098/1‑91 (MQ=255)
                                      aaCAATATTAAACTAAGCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAAc                                                     <  2:3786309/91‑1 (MQ=255)
                                      aaCAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAAc                                                     <  1:2171534/91‑1 (MQ=255)
                                       aCAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACg                                                    >  2:2869673/1‑91 (MQ=255)
                                         AATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTa                                                  >  2:3889890‑M1/1‑91 (MQ=255)
                                          ATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTaa                                                 <  1:1970761‑M1/91‑1 (MQ=255)
                                          ATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTaa                                                 >  1:2685793‑M1/1‑91 (MQ=255)
                                          ATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTaa                                                 <  1:2492824‑M1/91‑1 (MQ=255)
                                          ATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACATaa                                                 <  1:3065090‑M1/91‑1 (MQ=255)
                                           TATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAAc                                                >  1:2979505‑M1/1‑91 (MQ=255)
                                           TATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAAc                                                <  1:96337‑M1/91‑1 (MQ=255)
                                            ATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACa                                               >  2:242476‑M1/1‑91 (MQ=255)
                                            ATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACa                                               <  1:135071‑M1/91‑1 (MQ=255)
                                             ttaaactaaccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACaa                                              >  1:139765‑M2/46‑91 (MQ=255)
                                             TTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACaa                                              >  1:2548345‑M1/1‑91 (MQ=255)
                                              taaactaaccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAAcaag                                             >  2:3927729‑M2/45‑90 (MQ=255)
                                              TAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAAt                                             >  1:502706‑M1/1‑91 (MQ=255)
                                               aaactaaccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAACTTAAGACAGTACAATCAAACGTAACAATg                                            >  2:826986‑M2/44‑91 (MQ=255)
                                               aaactaaccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATg                                            >  1:3039504‑M2/44‑91 (MQ=255)
                                               aaactaaccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATg                                            >  1:2045403‑M2/44‑91 (MQ=255)
                                               AAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATg                                            <  1:468727‑M1/91‑1 (MQ=255)
                                               AAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATg                                            <  1:911386‑M1/91‑1 (MQ=255)
                                               AAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATg                                            <  1:798881‑M1/91‑1 (MQ=255)
                                                   taaccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAAt                                        >  2:1988354‑M2/40‑91 (MQ=255)
                                                    AACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATa                                       >  2:1692105‑M1/1‑91 (MQ=255)
                                                    AACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATa                                       >  2:2126786‑M1/1‑91 (MQ=255)
                                                     ACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAGTaa                                      <  1:3553849‑M1/91‑1 (MQ=255)
                                                      ccccttctatctaaaatttaaggttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATaaa                                     >  1:214885‑M2/37‑91 (MQ=255)
                                                      CCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATaaa                                     >  1:3815441‑M1/1‑91 (MQ=255)
                                                      CCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATaaa                                     >  1:3489793‑M1/1‑91 (MQ=255)
                                                      CCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATaaa                                     <  1:704296‑M1/91‑1 (MQ=255)
                                                       CTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAAt                                    >  2:2450418‑M1/1‑91 (MQ=255)
                                                         tAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGa                                  <  2:2915751/91‑1 (MQ=255)
                                                          aaaTTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGAt                                 <  1:716598/91‑1 (MQ=255)
                                                          aaaTTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGAt                                 <  2:44667/91‑1 (MQ=255)
                                                            aTTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATaa                               <  2:1468646/91‑1 (MQ=255)
                                                                tagatagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGAc                           <  1:1168597/91‑1 (MQ=255)
                                                                 agatagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACt                          <  1:3347098/91‑1 (MQ=255)
                                                                 agatagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACt                          >  1:3530217/1‑91 (MQ=255)
                                                                  gatagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACtt                         <  2:2136007/91‑1 (MQ=255)
                                                                  gatagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACtt                         >  2:1366300/1‑91 (MQ=255)
                                                                   atagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTc                        <  1:1233703/91‑1 (MQ=255)
                                                                    tagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCg                       >  1:2453560/1‑91 (MQ=255)
                                                                      gaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCACGACAGTACAATCAAAAGTAACAATGCAATAAATGAAAAAGACTTCGaa                     >  2:1884700/1‑91 (MQ=255)
                                                                        aGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGaaaa                   <  2:2327797/91‑1 (MQ=255)
                                                                        aGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGaaaa                   >  1:2643450/1‑91 (MQ=255)
                                                                        aGGGGTTAGTTGAATATTTGAAAGACGATTTGACAACTCAAGACAGTACGATCAAACGTTACAATGCAATAAATGATAAAGACTTCGaaaa                   <  2:3013509/91‑1 (MQ=255)
                                                                          gggTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGt                 <  2:3238435/91‑1 (MQ=255)
                                                                           ggttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGtt                >  2:853906‑M2/16‑91 (MQ=255)
                                                                            gttagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTa               <  2:1080492‑M2/77‑1 (MQ=255)
                                                                              tagtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGt             <  1:2091091‑M2/79‑1 (MQ=255)
                                                                                gtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTaa           <  1:2877276‑M2/81‑1 (MQ=255)
                                                                                gtttaatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTaa           >  2:2648912‑M2/11‑91 (MQ=255)
                                                                                gtttaatattTGAAATACGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTaa           <  2:1292823‑M2/81‑1 (MQ=255)
                                                                                   taatattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATgg        <  1:1309558‑M2/84‑1 (MQ=255)
                                                                                     atattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGAt      >  2:1079720‑M2/6‑91 (MQ=255)
                                                                                      tattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATc     <  1:3655341‑M2/87‑1 (MQ=255)
                                                                                      tattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATc     >  1:442498‑M2/5‑91 (MQ=255)
                                                                                      tattTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATc     >  1:1815921‑M2/5‑91 (MQ=255)
                                                                                       attTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCt    <  1:378170‑M2/88‑1 (MQ=255)
                                                                                        ttTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTa   >  2:717840‑M2/3‑91 (MQ=255)
                                                                                         tTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTAc  <  2:1047505‑M2/90‑1 (MQ=255)
                                                                                          |                                                                                         
AAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTAC  >  USA300TCH1516_ALE/580698‑580877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.