BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	646656 =	172 (0.840)	28 (0.160)	12/140	NT	15.4%	intergenic (+10/‑577)	lipL/galK	Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase
*	?	USA300TCH1516_ALE	646692 =	158 (0.890)	28 (0.160)	12/140	NT	15.4%	intergenic (+46/‑541)	lipL/galK	Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase

Only 100 of 265 total aligned reads displayed.

AAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGAA  >  USA300TCH1516_ALE/646602‑646782

aaaaTGATGGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAt                                                                                            <  2:1458686/91‑1 (MQ=255)

   aTGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAtttt                                                                                         >  2:1628212/1‑91 (MQ=255)

   aTGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAtttt                                                                                         >  1:3624535/1‑91 (MQ=255)

    tGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAttttt                                                                                        >  2:2384226/1‑91 (MQ=255)

    tGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAttttt                                                                                        <  1:2251085/91‑1 (MQ=255)

    tGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAttttt                                                                                        <  2:2748741/91‑1 (MQ=255)

       ttGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGaa                                                                                     >  1:630165/1‑91 (MQ=255)

       ttGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGaa                                                                                     <  2:1788871/91‑1 (MQ=255)

           aggaaaCAAGAAGATGATATATCAAATGCAGTAGTTAAGTATGTAACAGCCCCTTTCAAGTTATCGTTTGTGGCTGTTATTTTTGAAAGTa                                                                                 <  2:2575665/89‑1 (MQ=255)

            agaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTAt                                                                                <  2:3760785/91‑1 (MQ=255)

              aaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATcc                                                                              <  1:2999085/91‑1 (MQ=255)

               aaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCa                                                                             <  1:1752190/91‑1 (MQ=255)

               aaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCa                                                                             >  1:3482206/1‑91 (MQ=255)

                aCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCAt                                                                            >  2:1167847/1‑91 (MQ=255)

                aCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCAt                                                                            <  2:392992/91‑1 (MQ=255)

                aCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCAt                                                                            >  2:160681/1‑91 (MQ=255)

                aCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCAt                                                                            >  1:3938825/1‑91 (MQ=255)

                 cAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCGAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATa                                                                           <  2:1564324/91‑1 (MQ=255)

                 cAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATa                                                                           >  2:1409516/1‑91 (MQ=255)

                  aaGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaa                                                                          <  1:3734088/91‑1 (MQ=255)

                   aGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaa                                                                         >  2:1715780/1‑91 (MQ=255)

                    gAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaaa                                                                        >  1:1903570/1‑91 (MQ=255)

                      aaaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAg                                                                      <  2:323780/91‑1 (MQ=255)

                       aaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGc                                                                     <  1:275242/91‑1 (MQ=255)

                       aaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGc                                                                     >  1:784446/1‑91 (MQ=255)

                           aTAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTTTCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATaa                                                                 >  1:3135620/1‑91 (MQ=255)

                           aTAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATaa                                                                 >  2:1667704/1‑91 (MQ=255)

                            tAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATaaa                                                                <  2:2047978/91‑1 (MQ=255)

                             aGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAat                                                               >  1:2881883/1‑91 (MQ=255)

                              gATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAata                                                              <  1:3100228/91‑1 (MQ=255)

                               aTCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAatat                                                             <  1:1080559/91‑1 (MQ=255)

                               aTCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAatat                                                             <  1:1080377/91‑1 (MQ=255)

                               aTCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAatat                                                             >  2:2242748/1‑91 (MQ=255)

                                tCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATg                                                            >  2:1526740/1‑91 (MQ=255)

                                tCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATg                                                            >  2:2452970/1‑91 (MQ=255)

                                 cAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGt                                                           >  2:2847017/1‑91 (MQ=255)

                                   aaTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTa                                                         <  1:1215381/91‑1 (MQ=255)

                                   aaTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTa                                                         >  1:453067/1‑91 (MQ=255)

                                    aTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAt                                                        >  1:3258527/1‑91 (MQ=255)

                                          tAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCt                                                  <  1:2146865/91‑1 (MQ=255)

                                          tAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCt                                                  >  2:829614/1‑91 (MQ=255)

                                           aGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTa                                                 >  1:230856/1‑91 (MQ=255)

                                           aGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTa                                                 >  1:417952/1‑91 (MQ=255)

                                             ttAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAat                                               >  1:1379769/1‑91 (MQ=255)

                                                aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                            <  2:418903/91‑1 (MQ=255)

                                                aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                            >  1:977926/1‑91 (MQ=255)

                                                aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                            <  2:63114/91‑1 (MQ=255)

                                                 atatTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAttt                                           <  1:872178/91‑1 (MQ=255)

                                                   atTTAACGGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTaa                                         <  2:2993599/91‑1 (MQ=255)

                                                   atTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTaa                                         <  1:1362148/91‑1 (MQ=255)

                                                   atTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTaa                                         >  1:2369692/1‑91 (MQ=255)

                                                      TAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTACAtt                                      <  1:3559149‑M1/91‑1 (MQ=255)

                                                       aacagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTg                                     >  1:2553327‑M2/36‑91 (MQ=255)

                                                        ACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGa                                    <  2:2936813‑M1/91‑1 (MQ=255)

                                                         cagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGaa                                   >  1:1686014‑M2/34‑91 (MQ=255)

                                                         cagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAAGATGTTATTGACCTAATATTTAAATTGaa                                   >  2:268040‑M2/34‑91 (MQ=255)

                                                           gccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATCTGTTATTGACCTAATATTTAAATTGAAca                                 >  2:3764499‑M2/32‑91 (MQ=255)

                                                           gccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAca                                 >  1:195270‑M2/32‑91 (MQ=255)

                                                           GCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAca                                 >  2:2777770‑M1/1‑91 (MQ=255)

                                                           GCCCCTTTCAAGTTATCGTTTGGGGCTGTTATATTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAca                                 >  1:3362152‑M1/1‑91 (MQ=255)

                                                            ccccaaacgataacttgaaaggggctgttaTTTTTGAGAGTATCCATAAAAAGCATAAATATGTTTTTGACCTAATATTTAAATTGAAcat                                >  1:3328602‑M2/31‑91 (MQ=255)

                                                            CCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTAGCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                                <  2:3351250‑M1/91‑1 (MQ=255)

                                                             CCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatc                               <  1:3460151‑M1/91‑1 (MQ=255)

                                                             CCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatc                               <  1:2590085‑M1/91‑1 (MQ=255)

                                                             CCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatc                               <  2:90329‑M1/91‑1 (MQ=255)

                                                              ccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatca                              >  1:864389‑M2/29‑91 (MQ=255)

                                                              ccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatca                              >  1:2857909‑M2/29‑91 (MQ=255)

                                                              CCTTTCAAGTTATCGTTTTTGTCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatca                              >  1:1174704‑M1/1‑91 (MQ=255)

                                                               CTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatcat                             >  2:1401753‑M1/1‑91 (MQ=255)

                                                                tttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatt                            >  1:577860/1‑91 (MQ=255)

                                                                tttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatt                            <  1:2816696/91‑1 (MQ=255)

                                                                 ttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatta                           >  1:2082110/1‑91 (MQ=255)

                                                                 aacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatta                           >  2:749153‑M2/26‑91 (MQ=255)

                                                                 aacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatta                           >  2:1366946‑M2/26‑91 (MQ=255)

                                                                  acgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                          >  2:2712629‑M2/25‑91 (MQ=255)

                                                                   cAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaa                         >  1:3829547/1‑91 (MQ=255)

                                                                   cAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaa                         >  2:860844/1‑91 (MQ=255)

                                                                   cAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaa                         >  2:1489984/1‑91 (MQ=255)

                                                                     aGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatt                       <  1:2593188/91‑1 (MQ=255)

                                                                       ttATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaattaa                     >  2:383477/1‑91 (MQ=255)

                                                                        tATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCAttaaattaaa                    >  2:2569243/1‑91 (MQ=255)

                                                                        tATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCAttaaattaaa                    >  2:1287015/1‑91 (MQ=255)

                                                                         attgTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTaaaa                   >  2:1241676/4‑91 (MQ=255)

                                                                         aTCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAGCATCATTAAATTaaaa                   >  2:3037782/1‑91 (MQ=255)

                                                                             tttGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTaa               >  2:2206942/1‑91 (MQ=255)

                                                                              ttGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAat              <  1:1576135/91‑1 (MQ=255)

                                                                              ttGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAat              >  1:1155823/1‑91 (MQ=255)

                                                                               tGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatg             >  2:2436902/1‑91 (MQ=255)

                                                                               tGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATGTAAATTGAACATCATTACATTAAAAGTAatg             >  2:303351/1‑91 (MQ=255)

                                                                                ggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatga            >  1:2044225‑M2/11‑91 (MQ=255)

                                                                                 gggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgat           >  1:716288‑M2/10‑91 (MQ=255)

                                                                                  ggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgata          <  1:1297309‑M2/83‑1 (MQ=255)

                                                                                   gctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatat         >  2:3502046‑M2/8‑91 (MQ=255)

                                                                                   gctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatat         <  2:3474619‑M2/84‑1 (MQ=255)

                                                                                    ctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatg        <  2:471518‑M2/85‑1 (MQ=255)

                                                                                     tgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatga       >  1:2468466‑M2/6‑91 (MQ=255)

                                                                                      gttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatgat      >  1:1283122‑M2/5‑91 (MQ=255)

                                                                                      gttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatgat      >  2:598453‑M2/5‑91 (MQ=255)

                                                                                      gttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatgat      >  1:2722534‑M2/5‑91 (MQ=255)

                                                                                      gttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatgat      >  1:2638289‑M2/5‑91 (MQ=255)

AAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGAA  >  USA300TCH1516_ALE/646602‑646782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.