BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	681130 =	223 (1.090)	20 (0.120)	9/136	NT	10.4%	intergenic (‑200/+8)	USA300HOU_RS03280/USA300TCH1516_00615	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	681182 =	155 (0.900)	20 (0.120)	9/136	NT	10.4%	coding (310/354 nt)	USA300TCH1516_00615	hypothetical protein

Only 100 of 293 total aligned reads displayed.

TGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAATTTGTTTAAC  >  USA300TCH1516_ALE/681092‑681272

tgtcctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTc                                                                                            >  1:193228/1‑91 (MQ=255)

 gtcctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTca                                                                                           <  2:2994739/91‑1 (MQ=255)

 gtcctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTca                                                                                           <  2:229283/91‑1 (MQ=255)

   cctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTcaca                                                                                         <  1:2868786/91‑1 (MQ=255)

    ctTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACaa                                                                                        <  2:3178448/91‑1 (MQ=255)

     ttCCTCGCACACTGTCATCCCTTCGCTTAGATTAATTTATGATGTTTGACGGGTTCGTTCCCCGCACTGTCATTTGTTATAGGTTCACAAt                                                                                       <  2:3472350/91‑1 (MQ=255)

     ttCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAAt                                                                                       <  1:2408972/91‑1 (MQ=255)

       ccGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAAttt                                                                                     <  1:1186366/91‑1 (MQ=255)

       ccGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAAttt                                                                                     <  1:1409430/91‑1 (MQ=255)

        cgcgCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAAtttt                                                                                    <  1:3356204/91‑1 (MQ=255)

          cgcTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTtgt                                                                                  >  1:989518/1‑91 (MQ=255)

          cgcTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTCtgt                                                                                  >  1:3556526/1‑91 (MQ=255)

           gcTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTtgtg                                                                                 <  1:664763/91‑1 (MQ=255)

               aTTGTAAACCATTCGCTTAGATTAACCTATTTTAATAGACGGGTTCGTGCCTCACACAGTCATTTAAGATAGGTTCACAATTTTGTGTGCt                                                                             <  2:3571861/91‑1 (MQ=255)

               aTTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCt                                                                             <  1:1009015/91‑1 (MQ=255)

                 tGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTa                                                                           >  2:2684980/1‑91 (MQ=255)

                  gTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTAc                                                                          >  1:456704/1‑91 (MQ=255)

                   tAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACa                                                                         <  2:2168554/91‑1 (MQ=255)

                   tAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACa                                                                         <  2:3798852/91‑1 (MQ=255)

                    aaaCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACAt                                                                        <  2:3864485/91‑1 (MQ=255)

                     aaCCGTTCGCTCAGATTAACCTATATTAATTGCCGGGTTCGTGCCTCACTCAGTCATTTAATATAGGTTCACACTTCTGTGTGCTTACATg                                                                       <  2:728335/91‑1 (MQ=255)

                     aaCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATg                                                                       >  2:1157629/1‑91 (MQ=255)

                      aCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATgg                                                                      >  1:1823758/1‑91 (MQ=255)

                      aCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATgg                                                                      <  2:1639916/91‑1 (MQ=255)

                      aCCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATgg                                                                      >  2:1259579/1‑91 (MQ=255)

                        cATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGGCTCACACAGTCATTTAATATAGGTTCACACTGTTGTGTGCTACCATGGTa                                                                    >  2:2825074/1‑91 (MQ=255)

                        cATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTa                                                                    >  2:2743006/1‑91 (MQ=255)

                         aTTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTAc                                                                   >  1:31145/1‑91 (MQ=255)

                            cGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACttt                                                                >  1:842165/1‑91 (MQ=255)

                            cGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACttt                                                                >  2:585140/1‑91 (MQ=255)

                            cGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACttt                                                                >  1:63564/1‑91 (MQ=255)

                            cGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGCGCTTACATGGTACttt                                                                >  2:3776753/1‑91 (MQ=255)

                             gCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTa                                                               <  1:2946354/91‑1 (MQ=255)

                              cTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAg                                                              <  1:3593081/91‑1 (MQ=255)

                               ttAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGc                                                             >  2:1461302/1‑91 (MQ=255)

                               ttAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGc                                                             >  1:3920417/1‑91 (MQ=255)

                                tAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCa                                                            <  2:362580/91‑1 (MQ=255)

                                  gATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCAtt                                                          >  1:1625554/1‑91 (MQ=255)

                                     tAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTcc                                                       <  2:450464/91‑1 (MQ=255)

                                      AACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCt                                                      <  2:513815‑M1/91‑1 (MQ=255)

                                      AACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCt                                                      >  1:2485234‑M1/1‑91 (MQ=255)

                                         CTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCAc                                                   >  1:2760843‑M1/1‑91 (MQ=255)

                                         CTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCAc                                                   >  2:3344160‑M1/1‑91 (MQ=255)

                                           ATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTc                                                 <  1:486172‑M1/91‑1 (MQ=255)

                                            tattaaatgactgtgtgaggcacgaacccgtcaattaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCg                                                >  1:1539227‑M2/47‑91 (MQ=255)

                                            tattaaatgactgtgtgaggcacgaacccgtcaattaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCg                                                >  1:591689‑M2/47‑91 (MQ=255)

                                            tattaaatgactgtgtgaggcacgaacccgtcaattaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCg                                                >  1:3738867‑M2/47‑91 (MQ=255)

                                             attaaatgactgtgtgaggcacgaacccgtcaattaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGa                                               >  1:2819675‑M2/46‑91 (MQ=255)

                                              TTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGAt                                              <  1:2527349‑M1/91‑1 (MQ=255)

                                               TAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGAtt                                             >  2:338944‑M1/1‑91 (MQ=255)

                                               TAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGAtt                                             >  2:1784079‑M1/1‑91 (MQ=255)

                                                aaatgactgtgtgaggcacgaacccgtcaattaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGAttt                                            >  2:1825580‑M2/43‑91 (MQ=255)

                                                 aatgactgtgtgaggcacgaacccgtcaattaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTta                                           >  2:3134976‑M2/42‑91 (MQ=255)

                                                 aatgactgtgtgaggcacgaacccgtcaattaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTta                                           >  2:91719‑M2/42‑91 (MQ=255)

                                                  ttGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtat                                          <  1:3463982/91‑1 (MQ=255)

                                                  ttGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtat                                          <  2:2331669/91‑1 (MQ=255)

                                                   tGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtata                                         <  1:2356109/91‑1 (MQ=255)

                                                   tGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtata                                         >  1:1368054/1‑91 (MQ=255)

                                                   tGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtata                                         <  2:1367410/91‑1 (MQ=255)

                                                   tGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtata                                         <  1:165559/91‑1 (MQ=255)

                                                   tGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTtata                                         >  1:2442343/1‑91 (MQ=255)

                                                    gACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAg                                        >  1:553177/1‑91 (MQ=255)

                                                      cGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTc                                      >  1:2911298/1‑91 (MQ=255)

                                                       gggTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCa                                     >  1:875258/1‑91 (MQ=255)

                                                       gggTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCa                                     >  2:2441543/1‑91 (MQ=255)

                                                         gTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCaaa                                   >  1:1112819/1‑91 (MQ=255)

                                                          ttCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAat                                  >  1:1267836/1‑91 (MQ=255)

                                                           tCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAata                                 >  2:2482237/1‑91 (MQ=255)

                                                            cGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAatat                                >  2:3417946/1‑91 (MQ=255)

                                                            cGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAatat                                >  2:1536257/1‑91 (MQ=255)

                                                             gTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATc                               <  1:1673884/91‑1 (MQ=255)

                                                             gTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATc                               <  1:720314/91‑1 (MQ=255)

                                                              tGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCa                              >  2:804132/1‑91 (MQ=255)

                                                              tGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCa                              <  1:2033050/91‑1 (MQ=255)

                                                                 cTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTc                           <  1:1483792/91‑1 (MQ=255)

                                                                  tCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCg                          >  2:538633/1‑91 (MQ=255)

                                                                  tCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCg                          <  1:2096272/91‑1 (MQ=255)

                                                                      acaGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGc                      >  1:2011785/1‑91 (MQ=255)

                                                                      acaGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGc                      <  1:3281114/91‑1 (MQ=255)

                                                                      acaGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGc                      >  1:1157103/1‑91 (MQ=255)

                                                                      acaGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGc                      >  1:1844103/1‑91 (MQ=255)

                                                                         gTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCATATATCATTCGAGGCCGt                   >  1:3382525/1‑91 (MQ=255)

                                                                          tCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTg                  <  2:1200590/91‑1 (MQ=255)

                                                                          tCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTg                  >  2:3724593/1‑91 (MQ=255)

                                                                           cATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGc                 <  1:1001999/91‑1 (MQ=255)

                                                                            aTTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCa                >  1:3199000/1‑91 (MQ=255)

                                                                             tttAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAt               <  2:2910916/91‑1 (MQ=255)

                                                                             tttAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAt               <  1:2197195/91‑1 (MQ=255)

                                                                             tttAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAt               >  1:1716913/1‑91 (MQ=255)

                                                                              ttaatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCAtt              <  1:2255979‑M2/79‑1 (MQ=255)

                                                                               taatataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTa             >  1:233204‑M2/12‑91 (MQ=255)

                                                                                 atataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAAt           <  2:1916‑M2/82‑1 (MQ=255)

                                                                                  tataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAAtt          <  2:1421949‑M2/83‑1 (MQ=255)

                                                                                   ataggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAAttt         >  1:3745763‑M2/8‑91 (MQ=255)

                                                                                      ggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAATTTGtt      <  1:3658223‑M2/87‑1 (MQ=255)

                                                                                      ggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAATTTGtt      <  2:2312862‑M2/87‑1 (MQ=255)

                                                                                      ggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAATTTGtt      <  1:701685‑M2/87‑1 (MQ=255)

                                                                                      ggttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAATTTGtt      >  2:1718878‑M2/5‑91 (MQ=255)

                                                                                        ttCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCTCTCGATTTATAGTCAAATAGCATTCGAGGCCGTGCATTAATTTGTTTa    <  2:201011‑M2/89‑1 (MQ=255)

                                                                                          cacaATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCTATTTATAGTCAAATATCATTCGAGGCCGTGCATTAATTTGTTTAAc  <  1:3144969/91‑1 (MQ=255)

TGTCCTTCCGCGCTCATTGTAAACCATTCGCTTAGATTAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATATAGGTTCACAATTTTGTGTGCTTACATGGTACTTTAGCATTTCCTCACTCGATTTATAGTCAAATATCATTCGAGGCCGTGCATTAATTTGTTTAAC  >  USA300TCH1516_ALE/681092‑681272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.