BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	729254 =	166 (0.810)	22 (0.130)	11/136	NT	13.3%	intergenic (+55/‑96)	USA300HOU_RS03535/aes	hypothetical protein/Acetyl esterase
*	?	USA300TCH1516_ALE	729295 =	147 (0.850)	22 (0.130)	11/136	NT	13.3%	intergenic (+96/‑55)	USA300HOU_RS03535/aes	hypothetical protein/Acetyl esterase

Only 100 of 268 total aligned reads displayed.

TATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGC  >  USA300TCH1516_ALE/729205‑729384

tatGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCttttt                                                                                           <  2:2668181/91‑1 (MQ=255)

 atGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTta                                                                                          <  1:521797/91‑1 (MQ=255)

  tGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtat                                                                                         >  2:1342922/1‑91 (MQ=255)

  tGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtat                                                                                         <  1:904028/91‑1 (MQ=255)

   gAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtata                                                                                        <  2:976227/91‑1 (MQ=255)

   gAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtata                                                                                        <  1:3531479/91‑1 (MQ=255)

   gAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTtata                                                                                        >  2:3503141/1‑91 (MQ=255)

    aGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTatat                                                                                       >  2:1498125/1‑91 (MQ=255)

      ggATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTAtattt                                                                                     <  1:2790790/91‑1 (MQ=255)

      ggATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTAtattt                                                                                     <  1:100177/91‑1 (MQ=255)

      ggATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTAtattt                                                                                     >  2:457114/1‑91 (MQ=255)

        atatCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTAtatttat                                                                                   <  1:2263606/91‑1 (MQ=255)

        atatCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTAtatttat                                                                                   <  2:3579975/91‑1 (MQ=255)

          atCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTc                                                                                 <  1:1457766/91‑1 (MQ=255)

          atCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTc                                                                                 <  1:533685/91‑1 (MQ=255)

          atCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTc                                                                                 >  1:2292215/1‑91 (MQ=255)

            ccGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAg                                                                               <  2:3228999/91‑1 (MQ=255)

            ccGAAACTTTACAATTGAATCACTTTGTATGTACCTTAATACCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAg                                                                               <  1:1454620/91‑1 (MQ=255)

             cGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGt                                                                              >  2:1199609/1‑91 (MQ=255)

              gAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTc                                                                             <  1:98957/91‑1 (MQ=255)

               aaaCTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCt                                                                            <  2:760920/91‑1 (MQ=255)

               aaaCTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCt                                                                            >  2:3074290/1‑91 (MQ=255)

                aaCTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTa                                                                           >  2:269237/1‑91 (MQ=255)

                    ttACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTaa                                                                       >  1:1432572/1‑91 (MQ=255)

                     tACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAat                                                                      <  1:3407557/91‑1 (MQ=255)

                      aCAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAata                                                                     <  2:2146973/91‑1 (MQ=255)

                        aaTTCAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAACATg                                                                   >  1:3118830/1‑91 (MQ=255)

                          ttGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAg                                                                 <  1:2157782/91‑1 (MQ=255)

                           tGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGc                                                                >  2:1873183/1‑91 (MQ=255)

                           tGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTATACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGc                                                                >  1:3333389/1‑91 (MQ=255)

                            gAATCACTTTGTTTTAACCTTAAAAGCTATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTACTATGAGCg                                                               >  2:3649313/1‑91 (MQ=255)

                               tCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCt                                                            <  2:1723831/91‑1 (MQ=255)

                                 aCTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTaa                                                          >  2:1785811/1‑91 (MQ=255)

                                 aCTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTaa                                                          >  2:1531671/1‑91 (MQ=255)

                                 aCTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTaa                                                          >  1:197174/1‑91 (MQ=255)

                                  cTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAAc                                                         <  1:2582669/91‑1 (MQ=255)

                                   tttGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACa                                                        <  1:2758241/91‑1 (MQ=255)

                                    ttGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACaa                                                       <  2:3745088/91‑1 (MQ=255)

                                      gTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAAt                                                     >  2:1992309/1‑91 (MQ=255)

                                      gTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAAt                                                     >  1:3793922/1‑91 (MQ=255)

                                        tttAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATag                                                   <  1:73546/91‑1 (MQ=255)

                                        tttAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATag                                                   >  1:2718914/1‑91 (MQ=255)

                                           aaCCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGACTTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATagaga                                                >  2:3080439/1‑91 (MQ=255)

                                            aCCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATCCAGTCTATTAATATGAGCGTCTAACAAATagagag                                               >  1:2015209/1‑91 (MQ=255)

                                              cTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGt                                             <  2:294130/91‑1 (MQ=255)

                                               ttAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGCGAGGTa                                            <  1:3077074/91‑1 (MQ=255)

                                               ttAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTa                                            <  1:2433076/91‑1 (MQ=255)

                                               ttAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTa                                            <  2:1150340/91‑1 (MQ=255)

                                                tAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTAc                                           >  2:3393996/1‑91 (MQ=255)

                                                 AAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACg                                          >  2:773209‑M1/1‑91 (MQ=255)

                                                  AAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGa                                         >  1:3650599‑M1/1‑91 (MQ=255)

                                                  AAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGa                                         <  1:3609119‑M1/91‑1 (MQ=255)

                                                  AAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGa                                         >  1:1872956‑M1/1‑91 (MQ=255)

                                                   aagcaattcgcccgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGAt                                        >  1:1560596‑M2/40‑91 (MQ=255)

                                                    AGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATg                                       >  1:392678‑M1/1‑91 (MQ=255)

                                                    AGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATg                                       <  2:838251‑M1/91‑1 (MQ=255)

                                                     gcaattcgcccgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGt                                      >  2:805216‑M2/38‑91 (MQ=255)

                                                     gcaattcgcccgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGt                                      >  1:3025799‑M2/38‑91 (MQ=255)

                                                      CAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTa                                     >  2:1494404‑M1/1‑91 (MQ=255)

                                                       AATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTaa                                    >  2:3146615‑M1/1‑91 (MQ=255)

                                                       AATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTaa                                    <  1:289052‑M1/91‑1 (MQ=255)

                                                        attcgcccgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt                                   >  1:1784779‑M2/35‑91 (MQ=255)

                                                        ATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt                                   <  1:721891‑M1/91‑1 (MQ=255)

                                                        ATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt                                   <  1:2228504‑M1/91‑1 (MQ=255)

                                                        ATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt                                   >  1:2903073‑M1/1‑91 (MQ=255)

                                                        ATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt                                   >  1:293215‑M1/1‑91 (MQ=255)

                                                        ATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAAt                                   <  1:3310099‑M1/91‑1 (MQ=255)

                                                         ttcgcccgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATg                                  >  1:1151961‑M2/34‑91 (MQ=255)

                                                         ttcgcccgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATg                                  >  1:2471215‑M2/34‑91 (MQ=255)

                                                           CGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTAAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGaa                                <  1:3426910‑M1/91‑1 (MQ=255)

                                                            gcccgataagagcagagacgaattgcttatTATCTTTATTCAGTCTATCAATATGAGCGACTAACAAATAGAGAGGTACGATGTAATGAAt                               >  2:3272989‑M2/31‑91 (MQ=255)

                                                            GTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAAt                               <  1:1222683‑M1/91‑1 (MQ=255)

                                                             tctcTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATa                              >  1:3751655/1‑91 (MQ=255)

                                                              ctctACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATaa                             <  2:2839905/91‑1 (MQ=255)

                                                              ccgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGAACGATGTAATGAATaa                             >  2:554954‑M2/29‑91 (MQ=255)

                                                               cgataagagtagagacgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATaaa                            >  1:952849‑M2/28‑91 (MQ=255)

                                                                 tACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGa                          >  1:1059348/1‑91 (MQ=255)

                                                                 tACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGa                          >  2:365801/1‑91 (MQ=255)

                                                                     ctTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGataat                      >  2:3883454/1‑91 (MQ=255)

                                                                       tATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGAtaataa                    <  1:598255/91‑1 (MQ=255)

                                                                        aTCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATaaa                   >  2:1718319/1‑91 (MQ=255)

                                                                         tCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAAt                  >  2:642804/1‑91 (MQ=255)

                                                                          cGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGCGAGGTACGATGTAATGAATAAAGATAATAAATg                 >  2:2688860/1‑91 (MQ=255)

                                                                          cGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATg                 >  1:683665/1‑91 (MQ=255)

                                                                            ggCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGa               >  2:2950000/1‑91 (MQ=255)

                                                                             gCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGAc              >  2:3312398/1‑91 (MQ=255)

                                                                             gCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGAc              >  1:2546892/1‑91 (MQ=255)

                                                                               gcattgcttttTATATTTATGCAGTCTATTAATATGAGCGTCTAACAAATAGACAGGTACGACTTAATGAATAAAGATAACAAATGGACga            >  2:3866999‑M2/12‑91 (MQ=255)

                                                                               gaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACga            >  1:363551‑M2/12‑91 (MQ=255)

                                                                                  ttgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACgatga         >  1:3259563‑M2/9‑91 (MQ=255)

                                                                                  ttgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACgatga         <  1:885516‑M2/83‑1 (MQ=255)

                                                                                    gcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATa       >  1:2091802‑M2/7‑91 (MQ=255)

                                                                                    gcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATa       >  1:776272‑M2/7‑91 (MQ=255)

                                                                                     cttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATaa      <  2:127909‑M2/86‑1 (MQ=255)

                                                                                     cttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATaa      <  1:400892‑M2/86‑1 (MQ=255)

                                                                                      ttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAAc     <  2:3209764‑M2/87‑1 (MQ=255)

                                                                                       tttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACt    >  2:195835‑M2/4‑91 (MQ=255)

                                                                                       tttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACt    <  1:1885968‑M2/88‑1 (MQ=255)

                                                                                       tttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACt    >  1:1316243‑M2/4‑91 (MQ=255)

                                                                                        ttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTg   <  1:2634020‑M2/89‑1 (MQ=255)

TATGAGGGATATCCGAAACTTTACAATTGAATCACTTTGTTTTAACCTTAAAAGCAATTCGTCTCTACTCTTATCGGGCGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGC  >  USA300TCH1516_ALE/729205‑729384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.