BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	782414 =	191 (0.940)	13 (0.070)	7/140	NT	6.6%	intergenic (‑209/+133)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	782453 =	202 (1.140)	13 (0.070)	7/140	NT	6.6%	intergenic (‑248/+94)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein

Only 100 of 298 total aligned reads displayed.

CTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAAT  >  USA300TCH1516_ALE/782363‑782543

ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                            >  2:797416/1‑91 (MQ=255)

ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                            <  1:1425320/91‑1 (MQ=255)

ctcgGCAAACTTATGGGATTTAATAGTTGTATAAATATAAAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                            <  2:3143329/91‑1 (MQ=255)

 tctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGc                                                                                           <  2:1928000/91‑1 (MQ=255)

  ctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCt                                                                                          <  2:844928/91‑1 (MQ=255)

  ctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCt                                                                                          <  1:900417/91‑1 (MQ=255)

    gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCttt                                                                                        >  2:1901570/1‑91 (MQ=255)

    gCAATCGTATGGGATTTATTAGTTGGAAAAAAAAAGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCttt                                                                                        <  2:1991245/91‑1 (MQ=255)

       aTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                                                     <  2:1120097/91‑1 (MQ=255)

         cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                                   <  1:3465154/91‑1 (MQ=255)

          ttATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTg                                                                                  >  1:3222566/1‑91 (MQ=255)

          ttATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTg                                                                                  <  1:3820057/91‑1 (MQ=255)

          ttATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTg                                                                                  <  2:3788036/91‑1 (MQ=255)

          ttATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTg                                                                                  >  2:3102948/1‑91 (MQ=255)

           tATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGa                                                                                 <  1:1104870/91‑1 (MQ=255)

           tATGGGATTTAATAGTTGTAAATAAAATGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGa                                                                                 <  2:3892048/91‑1 (MQ=255)

            aggggATGTAATAGTTGTATATAAAATGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                                <  2:3808226/89‑1 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                                >  2:2799251/1‑91 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                                <  1:2393749/91‑1 (MQ=255)

              gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                                              >  2:1795756/1‑91 (MQ=255)

               ggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTaa                                                                             >  1:1767503/1‑91 (MQ=255)

                gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                                                            >  1:2694893/1‑91 (MQ=255)

                gATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAt                                                                            >  1:1992667/1‑91 (MQ=255)

                      aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                                      <  2:1100500/91‑1 (MQ=255)

                      aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                                      >  2:3738994/1‑91 (MQ=255)

                      aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                                      <  1:3132935/91‑1 (MQ=255)

                       tAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTa                                                                     >  1:2539126/1‑91 (MQ=255)

                        aGTCGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                                                    <  1:3191525/91‑1 (MQ=255)

                          ttGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATg                                                                  >  1:2446032/1‑91 (MQ=255)

                           tGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGt                                                                 >  2:3255411/1‑91 (MQ=255)

                              atatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGtata                                                              >  2:1423579/1‑91 (MQ=255)

                              atatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGtata                                                              >  1:3374637/1‑91 (MQ=255)

                              atatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGCAATGAGTGTACTGtata                                                              >  1:3390857/1‑91 (MQ=255)

                              atatatatTGAAAAAAGGAAAGTATGATTTCTACAAGATAGGGGGGCTGTGAAATCATACGCTTTACATTGAGTAATGAGTGTAATGtata                                                              >  2:982817/1‑91 (MQ=255)

                               tatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTatat                                                             >  2:89606/1‑91 (MQ=255)

                                 tatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                           <  1:1877942/91‑1 (MQ=255)

                                 tatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                           <  2:1731288/91‑1 (MQ=255)

                                     ttGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaaa                                                       <  1:1518810/91‑1 (MQ=255)

                                     ttGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaaa                                                       <  2:136366/91‑1 (MQ=255)

                                         aaaaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAtt                                                   >  2:2335584/1‑91 (MQ=255)

                                           aaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTg                                                 >  1:1151534/1‑91 (MQ=255)

                                           aaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTg                                                 <  2:2606613/91‑1 (MQ=255)

                                           aaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTg                                                 >  1:836348/1‑91 (MQ=255)

                                            aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAGAATTTGt                                                >  1:1957877/1‑91 (MQ=255)

                                            aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                                                <  2:2893075/91‑1 (MQ=255)

                                            aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                                                <  2:1633905/91‑1 (MQ=255)

                                             aGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTa                                               >  1:1572009/1‑91 (MQ=255)

                                              ggAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                                              >  1:3013943/1‑91 (MQ=255)

                                              ggAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                                              >  1:1244036/1‑91 (MQ=255)

                                              ggAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                                              >  2:2078825/1‑91 (MQ=255)

                                              ggAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                                              >  1:3635240/1‑91 (MQ=255)

                                                aaaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATg                                            <  1:1157862/91‑1 (MQ=255)

                                                aaaGTATGATTTCTACAAACTAGGGGGGCTGTGAAATCATATGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATg                                            <  2:279381/91‑1 (MQ=255)

                                                aaaGTATCATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAGTTTGTAATg                                            <  1:1972736/91‑1 (MQ=255)

                                                 aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                           <  1:3088772/91‑1 (MQ=255)

                                                 aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                           >  2:80876/1‑91 (MQ=255)

                                                 aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                           >  2:722936/1‑91 (MQ=255)

                                                 aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                           >  1:745901/1‑91 (MQ=255)

                                                  aGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAACTTTGTAATGta                                          >  1:3583345/1‑91 (MQ=255)

                                                  aGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGta                                          >  1:2965915/1‑91 (MQ=255)

                                                   cgtatgatttcacagcccccctagcttgtagaaatcata‑CTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtata                                        >  1:2786185‑M2/40‑91 (MQ=255)

                                                   GTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtat                                         <  1:662941‑M1/91‑1 (MQ=255)

                                                      TGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                                      >  1:2876640‑M1/1‑91 (MQ=255)

                                                        ATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaa                                    <  2:3062149‑M1/91‑1 (MQ=255)

                                                          ttcacagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaata                                  >  2:3770384‑M2/33‑91 (MQ=255)

                                                          TTCAACAAGCTAGGGGGGCTGTGAAATCATACGCTATCCATTGAGTGATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaata                                  >  2:2945256‑M1/1‑91 (MQ=255)

                                                           tcacagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatag                                 >  2:2542844‑M2/32‑91 (MQ=255)

                                                           TCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatag                                 >  2:1315123‑M1/1‑91 (MQ=255)

                                                             acagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTACAAATTTGTAATGTatagtaatagta                               >  1:2093526‑M2/30‑91 (MQ=255)

                                                              aCAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAt                              <  1:165581/91‑1 (MQ=255)

                                                              aCAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAt                              <  1:597707/91‑1 (MQ=255)

                                                                aaGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgt                            >  2:2562169/1‑91 (MQ=255)

                                                                 aGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgtt                           <  1:484126/91‑1 (MQ=255)

                                                                 aGCTAGGGGGGCTATAAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagtaaaaa                           <  2:731776/91‑5 (MQ=255)

                                                                      ggggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa                      <  2:1157045/91‑1 (MQ=255)

                                                                      ggggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa                      >  1:3732047/1‑91 (MQ=255)

                                                                       gggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaat                     <  2:3094032/91‑1 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                    <  1:1188413/91‑1 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                    <  1:281657/91‑1 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                    >  2:2231206/1‑91 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                    <  2:1021445/91‑1 (MQ=255)

                                                                          gggtgtgAAATCAGACGGTTTCCATTGAGTAATGAGGGTAACGTATATTTTAAAAAGTTGTTATGTATAGTAATAGTATGTTGtaaataaa                  <  2:2837585/88‑1 (MQ=255)

                                                                            cTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAg                <  1:2230511/91‑1 (MQ=255)

                                                                             tgtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGt               <  2:3219957/91‑1 (MQ=255)

                                                                             tgtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGt               >  2:3129373/1‑91 (MQ=255)

                                                                             tgtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGt               >  2:1505352/1‑91 (MQ=255)

                                                                              gtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGtt              >  2:693651/1‑91 (MQ=255)

                                                                               tgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGttt             >  2:2690737/1‑91 (MQ=255)

                                                                                 aaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTaa           >  2:3391859‑M2/10‑91 (MQ=255)

                                                                                  aatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAAc          <  2:1049025‑M2/83‑1 (MQ=255)

                                                                                   atcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACt         >  2:2510285‑M2/8‑91 (MQ=255)

                                                                                    tcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTc        <  1:217791‑M2/85‑1 (MQ=255)

                                                                                    tcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTc        >  1:2329634‑M2/7‑91 (MQ=255)

                                                                                     catacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCa       <  2:2552244‑M2/86‑1 (MQ=255)

                                                                                      atacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAg      <  1:939183‑M2/87‑1 (MQ=255)

                                                                                      atacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAg      <  2:197735‑M2/87‑1 (MQ=255)

                                                                                         cGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGaaa   >  2:558509‑M2/2‑91 (MQ=255)

                                                                                         cGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGaaa   >  1:1391948‑M2/2‑91 (MQ=255)

                                                                                          gCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAAt  >  1:2617026/1‑91 (MQ=255)

                                                                                          gCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAAt  <  2:524695/91‑1 (MQ=255)

CTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAAT  >  USA300TCH1516_ALE/782363‑782543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.