BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	869579 =	278 (1.360)	25 (0.140)	12/140	NT	9.3%	intergenic (+1262/+60)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein
*	?	USA300TCH1516_ALE	869621 =	247 (1.390)	25 (0.140)	12/140	NT	9.3%	intergenic (+1304/+18)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein

Only 100 of 392 total aligned reads displayed.

AAATCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAACT  >  USA300TCH1516_ALE/869532‑869711

  aTCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCt                                                                                         <  1:3812037/91‑1 (MQ=255)

  aTCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCt                                                                                         >  1:1726452/1‑91 (MQ=255)

    ccAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCtag                                                                                       <  2:2791167/91‑3 (MQ=255)

     tttgattataagaaattatgaggatattaaacatactaagattagctatgaagaaatctatcgtcatagatttcttcatagctaATCTTAg                                                                                      >  1:559112‑M2/85‑91 (MQ=255)

     ttgataaatagcatcataaaataaaaataaacatactaagatTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAg                                                                                      >  2:1203837‑M1/43‑91 (MQ=255)

     cAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAg                                                                                      <  1:2411102/91‑1 (MQ=255)

     cAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAg                                                                                      >  1:2934977/1‑91 (MQ=255)

     cAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAg                                                                                      <  2:1724564/91‑1 (MQ=255)

      ttgattataagaaattatgaggatattaaacatactaagattagctatgaaaaaatctatcgtcatagatttcttcatagctaATCTTAGt                                                                                     <  1:1482703‑M2/8‑1 (MQ=255)

      aaGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGt                                                                                     <  1:2626685/91‑1 (MQ=255)

       gataaatagcatcctaaaataaaaataaacatactaagatTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTa                                                                                    >  1:2435850‑M1/41‑91 (MQ=255)

       agagTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTa                                                                                    <  1:339920/91‑1 (MQ=255)

       agagTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTa                                                                                    >  1:3624925/1‑91 (MQ=255)

         agTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATg                                                                                  >  2:2615024/1‑91 (MQ=255)

          gTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGt                                                                                 <  1:2472429/91‑1 (MQ=255)

           tCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtt                                                                                >  1:1540251/1‑91 (MQ=255)

           tCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtt                                                                                >  1:761002/1‑91 (MQ=255)

           tCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtt                                                                                <  1:2994783/91‑1 (MQ=255)

           tCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtt                                                                                <  2:768739/91‑1 (MQ=255)

            cAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGttt                                                                               >  2:2039771/1‑91 (MQ=255)

             aGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGttta                                                                              <  1:2757760/91‑1 (MQ=255)

              gAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAGTCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttat                                                                             >  1:3147511/1‑91 (MQ=255)

              gAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttat                                                                             <  2:1355241/91‑1 (MQ=255)

              gAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttat                                                                             >  2:513112/1‑91 (MQ=255)

               aaCAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatt                                                                            <  1:1283250/91‑1 (MQ=255)

               aaCAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatt                                                                            <  2:2447318/91‑1 (MQ=255)

                   gACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttattttta                                                                        >  2:452840/1‑91 (MQ=255)

                    actactCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatttttat                                                                       >  1:3875361/1‑91 (MQ=255)

                    actactCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGtttatttttat                                                                       >  1:3488997/1‑91 (MQ=255)

                          cctcTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAgg                                                                 >  2:2711443/1‑91 (MQ=255)

                          cctcTTGATAACTATAAAAAATAGCTATGAAAGAATCTTTCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAgg                                                                 <  2:1020006/91‑1 (MQ=255)

                          cctcTATATAACGAAAAAAAATAGCAATGAAAAAAGCTATCGTCATAGATTCCTACGTAGCCAATCATAGTAGGTGTATTTTCATTTGAgg                                                                 <  2:2981178/91‑1 (MQ=255)

                           ctctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGa                                                                <  1:2336826/91‑1 (MQ=255)

                            tctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGAt                                                               <  1:1085106/91‑1 (MQ=255)

                            tctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGAt                                                               >  2:891798/1‑91 (MQ=255)

                            tctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGAt                                                               <  2:2132992/91‑1 (MQ=255)

                            tctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGAt                                                               >  2:429040/1‑91 (MQ=255)

                             ctTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATg                                                              <  1:3756431/91‑1 (MQ=255)

                              tttATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGc                                                             <  1:599201/91‑1 (MQ=255)

                                tataACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTa                                                           <  1:2665282/91‑1 (MQ=255)

                                tataACTATAAAAAATAACTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTa                                                           <  2:1174206/91‑1 (MQ=255)

                                 ataACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAt                                                          >  1:864305/1‑91 (MQ=255)

                                  taACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGCTGCTAtt                                                         >  2:3511880/1‑91 (MQ=255)

                                  taACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAtt                                                         <  1:471228/91‑1 (MQ=255)

                                  taACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAtt                                                         >  2:1800384/1‑91 (MQ=255)

                                  taACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAtt                                                         <  2:3716325/91‑1 (MQ=255)

                                  taACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAtt                                                         >  1:1629709/1‑91 (MQ=255)

                                   aaCTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAttt                                                        >  2:1261754/1‑91 (MQ=255)

                                    aCTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTa                                                       >  1:2376815/1‑91 (MQ=255)

                                      tataAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtc                                                     >  1:3254369/1‑91 (MQ=255)

                                        taAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaa                                                   <  1:180258/91‑1 (MQ=255)

                                        taAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaa                                                   <  2:1498897/91‑1 (MQ=255)

                                         aaaaaaTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaac                                                  <  2:1602650/91‑1 (MQ=255)

                                         aaaaaaTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaac                                                  <  1:1210396/91‑1 (MQ=255)

                                           aaaaTAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTAtcaactc                                                <  1:2049580/91‑1 (MQ=255)

                                               TAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACa                                            >  1:1393211‑M1/1‑91 (MQ=255)

                                                agctatgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACat                                           >  2:1962932‑M2/42‑91 (MQ=255)

                                                 GCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCACCTCAACata                                          <  2:2702820‑M1/91‑1 (MQ=255)

                                                 GCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACata                                          <  2:2520824‑M1/91‑1 (MQ=255)

                                                  CTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACatat                                         <  2:716997‑M1/91‑1 (MQ=255)

                                                   tatgaaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTATTATTTTAGGATGCTATTTAGCAACTCAACAtata                                        >  2:2577066‑M2/39‑91 (MQ=255)

                                                    atgaaggaatctatgacgatagattttttcacagctaATCTTAGTATGTTTATTTTTATTTTAGGATACTATTTATCAAGTCAACATATaa                                       >  2:3023504‑M2/38‑91 (MQ=255)

                                                    ATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATaa                                       >  1:3948020‑M1/1‑91 (MQ=255)

                                                      GAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACt                                     >  2:1859209‑M1/1‑91 (MQ=255)

                                                      GAAAAAATCTATCGTCATAGATTCCTTCATAGCCAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACt                                     >  1:1304471‑M1/1‑91 (MQ=255)

                                                       aaggaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATTTAACTc                                    >  2:2894520‑M2/35‑91 (MQ=255)

                                                        AAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCa                                   <  2:3344224‑M1/91‑1 (MQ=255)

                                                         aaaaTCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCAc                                  <  1:3057486/91‑1 (MQ=255)

                                                         aaaaTCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCAc                                  <  2:3274483/91‑1 (MQ=255)

                                                          gaatctatgacgatagattttttcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACt                                 >  1:1851886‑M2/32‑91 (MQ=255)

                                                           aaTCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTa                                <  2:970295/91‑1 (MQ=255)

                                                           aaTCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTa                                >  1:1020443/1‑91 (MQ=255)

                                                           aaTCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTa                                <  1:1901384/91‑1 (MQ=255)

                                                             tCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAtt                              <  2:3861160/91‑1 (MQ=255)

                                                             tCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAtt                              >  1:2683626/1‑91 (MQ=255)

                                                              ctatgacgatagattccttcatagctaATCTTAGTATGTTTATTTTCATTTTAGGATGCCATTTATCTACTCAACATATAACTCACTAttt                             >  2:637285‑M2/28‑91 (MQ=255)

                                                               tATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAtttt                            >  1:2172447/1‑91 (MQ=255)

                                                               tATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAtttt                            >  1:3705589/1‑91 (MQ=255)

                                                               tATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAtttt                            >  2:2392955/1‑91 (MQ=255)

                                                                aTCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTAttttt                           <  2:2277533/91‑1 (MQ=255)

                                                                 tCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTta                          >  2:146054/1‑91 (MQ=255)

                                                                     cATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAAc                      <  2:3742765/91‑1 (MQ=255)

                                                                        aGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCtt                   <  2:2866690/91‑1 (MQ=255)

                                                                        aGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCtt                   <  2:110301/91‑1 (MQ=255)

                                                                          aTTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTAATTATCAACTCAACATATAACTCACTATTTTTATAACCTTCt                 >  2:3472178/1‑91 (MQ=255)

                                                                           ttCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTa                <  2:596853/91‑1 (MQ=255)

                                                                           ttCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTa                <  2:1626474/91‑1 (MQ=255)

                                                                            tCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTaa               >  2:1392417/1‑91 (MQ=255)

                                                                             ccTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAat              >  1:2416873/1‑91 (MQ=255)

                                                                                tcatagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatata           >  1:1967007‑M2/10‑91 (MQ=255)

                                                                                 catagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAatatat          <  2:2790111‑M2/83‑1 (MQ=255)

                                                                                   tagctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCa        <  2:3816003‑M2/85‑1 (MQ=255)

                                                                                    agctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCAt       <  2:309288‑M2/86‑1 (MQ=255)

                                                                                    agctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCAt       <  2:2754286‑M2/86‑1 (MQ=255)

                                                                                     gctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCAtt      <  2:3582330‑M2/87‑1 (MQ=255)

                                                                                     gctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCAtt      >  1:92885‑M2/5‑91 (MQ=255)

                                                                                     gctaATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCAtt      <  1:1691323‑M2/87‑1 (MQ=255)

                                                                                        aATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAc   >  2:2175311‑M2/2‑91 (MQ=255)

                                                                                        aATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAAc   <  1:1268556‑M2/90‑1 (MQ=255)

                                                                                         aTCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAACt  <  1:684640/91‑1 (MQ=255)

AAATCCAAGAGTCAGAACAGACTACTCCTCTTTATAACTATAAAAAATAGCTATGAAAAAATCTATCGTCATAGATTCCTTCATAGCTAATCTTAGTATGTTTATTTTTATTTTAGGATGCTATTTATCAACTCAACATATAACTCACTATTTTTATAACCTTCTAATATATCATTAACT  >  USA300TCH1516_ALE/869532‑869711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.