BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	872094 =	203 (1.000)	11 (0.060)	8/144	NT	5.8%	intergenic (+8/‑209)	USA300HOU_RS04260/USA300HOU_RS04265	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	872124 =	177 (0.970)	11 (0.060)	8/144	NT	5.8%	intergenic (+38/‑179)	USA300HOU_RS04260/USA300HOU_RS04265	hypothetical protein/hypothetical protein

Only 100 of 263 total aligned reads displayed.

CTGATTTGAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCATTCAATTT  >  USA300TCH1516_ALE/872034‑872214

cTGATTTGAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATAc                                                                                            >  2:2729647/1‑91 (MQ=255)

 tGATTTGAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACt                                                                                           >  2:1167740/1‑91 (MQ=255)

  gATTTGAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACtt                                                                                          <  2:505342/91‑1 (MQ=255)

   aTTTGAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTta                                                                                         <  1:2035359/91‑1 (MQ=255)

     ttGAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GTTCAAATCGACCGTTTTAATACTtata                                                                                       <  2:2242941/91‑1 (MQ=255)

       gAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataat                                                                                     >  2:1571626/1‑91 (MQ=255)

       gAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataat                                                                                     >  1:752576/1‑91 (MQ=255)

       cttaaatcaatttttagataaactgcaaatcataaatttctttattattataagtattaaaaggtcaaatcgaccgttttaataCTTataa                                                                                      <  1:38594‑M2/7‑1 (MQ=255)

        aaTGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataata                                                                                    >  2:1770391/1‑91 (MQ=255)

         aTGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataataa                                                                                   <  1:3491489/91‑1 (MQ=255)

          tGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataataat                                                                                  <  1:78104/91‑1 (MQ=255)

          tGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataataat                                                                                  >  1:1534100/1‑91 (MQ=255)

          tGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataataat                                                                                  >  1:3935441/1‑91 (MQ=255)

           gTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTataataata                                                                                 >  2:2063540/1‑91 (MQ=255)

           gTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTCTTAATACTTataataata                                                                                 >  2:2349599/1‑91 (MQ=255)

            tACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTAtaataataa                                                                                <  2:3155878/91‑1 (MQ=255)

            tACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTAcaataataa                                                                                <  2:3155574/91‑1 (MQ=255)

            tACGTATGACTTATTATCATAATGTAAGTCGCAAACAACAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTAtaataataa                                                                                >  1:2689196/1‑91 (MQ=255)

             aCGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATaaa                                                                               <  2:1355276/91‑1 (MQ=255)

              cGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAg                                                                              >  2:2997947/1‑91 (MQ=255)

                tATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGaa                                                                            <  1:492864/91‑1 (MQ=255)

                  tGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAAt                                                                          >  1:3635157/1‑91 (MQ=255)

                  tGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAAt                                                                          >  2:578924/1‑91 (MQ=255)

                  tGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAAt                                                                          <  2:307297/91‑1 (MQ=255)

                   gACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAAtt                                                                         <  1:1921082/91‑1 (MQ=255)

                   gACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAAtt                                                                         <  2:3019184/91‑1 (MQ=255)

                     cTTATTATCATTATGTAAGTCGAGAACAATAGGAAGTTATATTAAAA‑GGACAAATCGACTGTTTTAATACTTATAATAATAAAGAAATTTa                                                                       <  2:3012283/91‑1 (MQ=255)

                     cTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTa                                                                       >  1:834172/1‑91 (MQ=255)

                     cTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTa                                                                       >  1:446967/1‑91 (MQ=255)

                      ttattaTCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTAt                                                                      >  1:1779077/1‑91 (MQ=255)

                       tattatCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATg                                                                     <  1:3569002/91‑1 (MQ=255)

                       tattatCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATg                                                                     <  2:214842/91‑1 (MQ=255)

                        attatCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGa                                                                    <  1:2953188/91‑1 (MQ=255)

                         ttatCATAATGTGAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGAt                                                                   >  2:2452840/1‑91 (MQ=255)

                         ttatCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGAt                                                                   >  1:3746957/1‑91 (MQ=255)

                         ttatCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGAt                                                                   <  2:3173460/91‑1 (MQ=255)

                           atCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGAttt                                                                 <  1:1148790/91‑1 (MQ=255)

                            tCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTg                                                                >  2:2630212/1‑91 (MQ=255)

                            tCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTg                                                                >  1:3536982/1‑91 (MQ=255)

                             cATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGc                                                               <  1:1056759/91‑1 (MQ=255)

                                   gTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTa                                                         <  2:3404788/91‑1 (MQ=255)

                                   gTAAGTCGCAAACAATAGGAAGTTATAGTAAAA‑GATCAAATCGACCGTTTTAATACTTATAATAATAAAGGAATTTATGATTTGCAGTTTa                                                         <  2:2880798/91‑1 (MQ=255)

                                     aaGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATc                                                       >  1:2494879/1‑91 (MQ=255)

                                      catCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCt                                                      <  1:689065/89‑1 (MQ=255)

                                      aGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCt                                                      <  2:909064/91‑1 (MQ=255)

                                      aGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCt                                                      <  2:3753375/91‑1 (MQ=255)

                                      aGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCt                                                      >  1:3050954/1‑91 (MQ=255)

                                       gTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTa                                                     >  2:3808523/1‑91 (MQ=255)

                                        tCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTaa                                                    >  1:3181903/1‑91 (MQ=255)

                                        tCGCAAACAATAGGAAGGTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTaa                                                    <  2:2693712/91‑1 (MQ=255)

                                         cGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTaaa                                                   >  1:3891002/1‑91 (MQ=255)

                                          gCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTaaaa                                                  >  1:1886405/1‑91 (MQ=255)

                                          gCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTaaaa                                                  >  1:1662073/1‑91 (MQ=255)

                                          gCAAACAATAGAAAGTTATATTAAAA‑AGTAAAATCGACCGTGTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATATaaaa                                                  <  2:3472456/91‑1 (MQ=255)

                                                 aTAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGAtt                                           >  1:2638611/1‑91 (MQ=255)

                                                 aTAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGAtt                                           >  1:3828431/1‑91 (MQ=255)

                                                  tAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGAttt                                          <  2:1661452/91‑1 (MQ=255)

                                                    ggAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTaa                                        >  1:2295171/1‑91 (MQ=255)

                                                     ttataagTATTAAAACGGTCGATTTGACC‑TTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAag                                       <  1:38671‑M1/84‑1 (MQ=255)

                                                     ttataagTATTAAAACGGTCGATTTGACC‑TTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAag                                       <  1:38425‑M1/84‑1 (MQ=255)

                                                     gAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAag                                       >  2:3351175/1‑91 (MQ=255)

                                                      tataagTATTAAAACGGTCGATTTGACC‑TTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAaga                                      <  1:1865226‑M1/85‑1 (MQ=255)

                                                       aGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAagag                                     <  1:1756564/91‑1 (MQ=255)

                                                        gTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAgg                                    <  2:3410066/91‑1 (MQ=255)

                                                          tataTTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGt                                  <  1:3797742/91‑1 (MQ=255)

                                                          tataTTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGt                                  <  2:143040/91‑1 (MQ=255)

                                                           atatTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTa                                 <  2:73222/91‑1 (MQ=255)

                                                            TATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAg                                <  2:484301‑M1/91‑1 (MQ=255)

                                                             ATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAgt                               <  1:1514999‑M1/91‑1 (MQ=255)

                                                             ATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAgt                               >  1:865339‑M1/1‑91 (MQ=255)

                                                              TTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAgtt                              <  2:1814438‑M1/91‑1 (MQ=255)

                                                              TTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAgtt                              <  1:1465263‑M1/91‑1 (MQ=255)

                                                                taaaacggtcgatttgaccttttaataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAgttg                             >  1:213793‑M2/28‑91 (MQ=255)

                                                                  AA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGttt                          >  2:502339‑M1/1‑91 (MQ=255)

                                                                  AA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGttt                          <  1:618870‑M1/91‑1 (MQ=255)

                                                                     ggTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTAt                        <  2:1982402/91‑1 (MQ=255)

                                                                     cggtcgatttgaccttttaataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTAt                        >  1:1944825‑M2/23‑91 (MQ=255)

                                                                       tCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTg                      >  1:1307164/1‑91 (MQ=255)

                                                                        tcgatttgaccttttaataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGc                     >  1:3363987‑M2/20‑91 (MQ=255)

                                                                        cAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGc                     >  1:1697692/1‑91 (MQ=255)

                                                                         aaaTCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCg                    <  2:285948/91‑1 (MQ=255)

                                                                         aaaTCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCg                    >  2:3179700/1‑91 (MQ=255)

                                                                           aTCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGaa                  <  1:3871141/91‑1 (MQ=255)

                                                                               aCCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAat              <  1:854169/91‑1 (MQ=255)

                                                                               aCCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAat              <  2:3952796/91‑1 (MQ=255)

                                                                                ccGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAata             >  1:2078769/1‑91 (MQ=255)

                                                                                ccGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAata             >  2:1805022/1‑91 (MQ=255)

                                                                                  gTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATc           >  2:2499230/1‑91 (MQ=255)

                                                                                  gTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATc           <  2:2223768/91‑1 (MQ=255)

                                                                                  gTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATc           >  2:1259863/1‑91 (MQ=255)

                                                                                   ttttaataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCa          <  1:1423605‑M2/83‑1 (MQ=255)

                                                                                   ttttaataCTTATAAGAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTAAATGCAAAAAATATCa          <  2:1495057‑M2/83‑1 (MQ=255)

                                                                                    tttaataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCAt         >  1:1791483‑M2/8‑91 (MQ=255)

                                                                                    tttaataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCAt         >  2:3664332‑M2/8‑91 (MQ=255)

                                                                                    tttaataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCAt         >  2:858261‑M2/8‑91 (MQ=255)

                                                                                      taataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCATTc       >  1:84551‑M2/6‑91 (MQ=255)

                                                                                        ataCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCATTCaa     >  1:2379997‑M2/4‑91 (MQ=255)

                                                                                         taCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCATTCAAt    <  1:3462385‑M2/89‑1 (MQ=255)

                                                                                         taCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCATTCAAt    >  1:1046829‑M2/3‑91 (MQ=255)

                                                                                          aCTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCATTCAAtt   >  1:1609138‑M2/2‑91 (MQ=255)

CTGATTTGAATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAA‑GGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAAAAATATCATTCAATTT  >  USA300TCH1516_ALE/872034‑872214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.