BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	908480 =	248 (1.220)	23 (0.120)	10/146	NT	9.7%	intergenic (+192/+43)	USA300HOU_RS04495/USA300HOU_RS04500	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	908515 =	200 (1.080)	23 (0.120)	10/146	NT	9.7%	intergenic (+227/+8)	USA300HOU_RS04495/USA300HOU_RS04500	hypothetical protein/hypothetical protein

Only 100 of 303 total aligned reads displayed.

ATAGATATAGATTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTAGCTG  >  USA300TCH1516_ALE/908426‑908605

atagatatagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTAt                                                                                            >  2:1362094/1‑91 (MQ=255)

  agatatagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCt                                                                                          >  1:1080681/1‑91 (MQ=255)

  agatatagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCt                                                                                          >  2:2347253/1‑91 (MQ=255)

  agatatagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCt                                                                                          >  1:2144436/1‑91 (MQ=255)

   gatatagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCta                                                                                         >  1:2379946/1‑91 (MQ=255)

    atatagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACGAGTTACATTAAAAAAGTAACCTGTCTTTATCtat                                                                                        >  1:608410/1‑91 (MQ=255)

       tagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AAc                                                                                    <  2:1783927/91‑1 (MQ=255)

       tagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AAc                                                                                    <  1:2644748/91‑1 (MQ=255)

       tagatTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AAc                                                                                    >  1:2044534/1‑91 (MQ=255)

           tttAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGt                                                                                >  1:386087/1‑91 (MQ=255)

            ttAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGtt                                                                               <  1:3028402/91‑1 (MQ=255)

             tAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGttt                                                                              >  1:2603986/1‑91 (MQ=255)

              aGAAATTATAAATTAATATTTGAGATACTAAAAAAAAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTta                                                                             <  2:3305685/91‑1 (MQ=255)

               gAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTATAAACTAGttat                                                                             <  1:3812378/91‑3 (MQ=255)

               gAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTtat                                                                            >  2:2985180/1‑91 (MQ=255)

                aaaTTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTATAAACTAGttata                                                                            <  2:3145820/91‑4 (MQ=255)

                 aaTTATAAATTAATCTTTGAGATTGTGCCTCTTAAAAAAAGACGAGTTACGTTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAg                                                                          <  2:3670355/91‑1 (MQ=255)

                 aaTTATAAATTAATATTTGAGATAATGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAg                                                                          <  2:3546384/91‑1 (MQ=255)

                  aTTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGt                                                                         <  1:3185267/91‑1 (MQ=255)

                  aTTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGt                                                                         <  1:879137/91‑1 (MQ=255)

                  aTTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGt                                                                         >  2:1099151/1‑91 (MQ=255)

                   ttATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTg                                                                        <  2:1273073/91‑1 (MQ=255)

                    tataAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGa                                                                       >  2:2363847/1‑91 (MQ=255)

                     ataAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGAt                                                                      >  1:2880718/1‑91 (MQ=255)

                       aaaTTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGAttt                                                                    >  1:2509429/1‑91 (MQ=255)

                       aaaTTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGAttt                                                                    >  2:2002694/1‑91 (MQ=255)

                       aaaTTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGAttt                                                                    >  2:3198614/1‑91 (MQ=255)

                        aaTTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGAtttt                                                                   >  2:3278215/1‑91 (MQ=255)

                        aaTTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGAtttt                                                                   >  1:1821646/1‑91 (MQ=255)

                         atgaaTATGTGAGTTACGGCGTCTGAAATAAAGAGAAGATACAATAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTa                                                                  <  2:2187629/88‑1 (MQ=255)

                         aTTAATAGTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTa                                                                  <  2:3848433/91‑1 (MQ=255)

                           tAATATTTGAGATACTGCCTCTTAAAAAAAGAAAAAATAAATAAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATc                                                                <  2:1989337/91‑1 (MQ=255)

                            aaTATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCt                                                               <  2:544590/91‑1 (MQ=255)

                             atatTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCta                                                              <  2:249/91‑1 (MQ=255)

                              tatTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCtat                                                             <  2:1336292/91‑1 (MQ=255)

                              tatTAGAGATACTGCCTCTTAAAAAAAGACAAGTTACAGAAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCtat                                                             <  2:2782700/91‑1 (MQ=255)

                               atTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCtata                                                            <  1:3737684/91‑1 (MQ=255)

                               atTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCtata                                                            <  1:1538659/91‑1 (MQ=255)

                                 ttGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATc                                                          >  1:3387055/1‑91 (MQ=255)

                                 ttGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATc                                                          <  2:2844137/91‑1 (MQ=255)

                                 ttGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATc                                                          <  1:2909134/91‑1 (MQ=255)

                                 ttGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATc                                                          <  1:1231850/91‑1 (MQ=255)

                                  tGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATcc                                                         >  1:1887811/1‑91 (MQ=255)

                                    agaTACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCtt                                                       <  2:1215928/91‑1 (MQ=255)

                                      aTACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCtttt                                                     >  2:154259/1‑91 (MQ=255)

                                         cTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTaa                                                  >  1:977337/1‑91 (MQ=255)

                                         cTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTaa                                                  >  2:2668516/1‑91 (MQ=255)

                                         cTGCCTCTTAAAAAAAGACAAGCTACATTAAAAAAGTAACCTGTCTTAATCTAT‑AACTAGTATATAGTGATCTTATCTACATCCTTTTTaa                                                  >  2:3898650/1‑91 (MQ=255)

                                          tGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTaaa                                                 >  2:769275/1‑91 (MQ=255)

                                          tGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTaaa                                                 <  1:1495642/91‑1 (MQ=255)

                                             ctctTAAAAAAAGACAAGGTACATTAAAAAAGTAACGTGTCTTTAGCTAT‑AAATAGCTTATAGTGATTTTATCTATATCCTTTTTAaacaa                                              >  2:91216/1‑91 (MQ=255)

                                              tctTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGCTTTTTTCTATATCCTTTTTAaacaac                                             >  1:1717303/1‑91 (MQ=255)

                                              tctTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGCCTTTATCTATCTCCTTTTTAaacaac                                             >  2:3426250/1‑91 (MQ=255)

                                                 tAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATc                                          <  1:1651801/91‑1 (MQ=255)

                                                 tAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATc                                          >  1:2228071/1‑91 (MQ=255)

                                                 tAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATc                                          <  1:2821796/91‑1 (MQ=255)

                                                   gataaagacaggttacttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCaa                                        >  1:3306510‑M2/39‑91 (MQ=255)

                                                   aaaaaaGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCaa                                        <  1:507227/91‑1 (MQ=255)

                                                     aaaaGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATc                                      >  2:1414804/1‑91 (MQ=255)

                                                      aaagacaggttacttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCg                                     >  1:1073566‑M2/36‑91 (MQ=255)

                                                      aaagacaggttacttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCg                                     >  2:1656938‑M2/36‑91 (MQ=255)

                                                      AAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCg                                     >  2:223772‑M1/1‑91 (MQ=255)

                                                       AAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGt                                    >  2:2513122‑M1/1‑91 (MQ=255)

                                                         GACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGAAATTATCTATATCCTTTTTAAACAACATAAATCGttt                                  <  2:3872132‑M1/91‑1 (MQ=255)

                                                          ACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTg                                 >  1:143292‑M1/1‑91 (MQ=255)

                                                          ACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTg                                 <  2:3499525‑M1/91‑1 (MQ=255)

                                                          ACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTg                                 <  2:2415560‑M1/91‑1 (MQ=255)

                                                          ACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTg                                 >  1:3908584‑M1/1‑91 (MQ=255)

                                                           CAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGt                                <  2:2378103‑M1/91‑1 (MQ=255)

                                                           CAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGt                                <  2:2023991‑M1/91‑1 (MQ=255)

                                                            aggttacttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACACCATCAATCGTTTGtt                               >  2:3348308‑M2/30‑91 (MQ=255)

                                                            AAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGtt                               <  2:419036‑M1/91‑1 (MQ=255)

                                                             ggttacttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTa                              >  1:3573648‑M2/29‑91 (MQ=255)

                                                             aGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTa                              >  2:1032526/1‑91 (MQ=255)

                                                             aGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTa                              >  2:792550/1‑91 (MQ=255)

                                                              gTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTAt                             <  2:58368/91‑1 (MQ=255)

                                                                tactttttttttgttacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCa                           >  2:2911100‑M2/26‑91 (MQ=255)

                                                                tacttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCa                           >  2:1592833‑M2/26‑91 (MQ=255)

                                                                 acttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCATTCGTTTGTTATCAt                          >  1:1318661‑M2/25‑91 (MQ=255)

                                                                 acttttttaatgtaacttgtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCAt                          >  1:1168358‑M2/25‑91 (MQ=255)

                                                                  cATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACACCAATCGTTTGTTATCAtt                         <  1:651131/91‑1 (MQ=255)

                                                                   aTTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATta                        >  1:3609415/1‑91 (MQ=255)

                                                                      aaaaaaGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAg                     >  1:3508533/1‑91 (MQ=255)

                                                                        aaaaGTAACCTGCCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGAc                   >  1:3058180/1‑91 (MQ=255)

                                                                         aaaGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACt                  <  1:792850/91‑1 (MQ=255)

                                                                             tAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCAc              <  1:744619/91‑1 (MQ=255)

                                                                             tAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCAc              <  1:420186/91‑1 (MQ=255)

                                                                              aaCCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCAcc             >  2:1566307/1‑91 (MQ=255)

                                                                              aaCCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCAcc             >  1:828981/1‑91 (MQ=255)

                                                                               aCCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCg            >  1:3210711/1‑91 (MQ=255)

                                                                                ccTGTCTTTATCTAT‑AACTAGTTTATAGTGACTTTATCTATATCCTTTTTAAACAACATCAATCGTTAGTTATCATTATCGACTTCACCGa           >  2:3022244/1‑91 (MQ=255)

                                                                                ccTGTCTCTATCCAT‑ACCTAGTCTATAGTGATTTTATCTATATCCTTTTTATACAACATCAATCGTCTGTTATCATTATAGACTTCTCCgc           >  2:1127863/1‑90 (MQ=255)

                                                                                   gtctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACtt        >  1:1273777‑M2/7‑91 (MQ=255)

                                                                                    tctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACttt       >  2:1039568‑M2/6‑91 (MQ=255)

                                                                                     ctttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTa      <  1:273405‑M2/87‑1 (MQ=255)

                                                                                      tttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTAg     >  2:3742233‑M2/4‑91 (MQ=255)

                                                                                      tttATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTAg     <  1:2995986‑M2/88‑1 (MQ=255)

                                                                                        tATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTAGCt   <  2:313200‑M2/90‑1 (MQ=255)

                                                                                        tATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTAGCt   <  2:1853235‑M2/90‑1 (MQ=255)

                                                                                         aTCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTAGCTg  <  2:679928/91‑1 (MQ=255)

ATAGATATAGATTTAGAAATTATAAATTAATATTTGAGATACTGCCTCTTAAAAAAAGACAAGTTACATTAAAAAAGTAACCTGTCTTTATCTAT‑AACTAGTTTATAGTGATTTTATCTATATCCTTTTTAAACAACATCAATCGTTTGTTATCATTATAGACTTCACCGACTTTAGCTG  >  USA300TCH1516_ALE/908426‑908605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.