BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 924496	197 (0.970)	20 (0.110)	11/144	NT	10.0%	coding (795/918 nt)	lipA_1	Lipoyl synthase
*	?	USA300TCH1516_ALE	= 924511	183 (1.000)	20 (0.110)	11/144	NT	10.0%	coding (810/918 nt)	lipA_1	Lipoyl synthase

Only 100 of 244 total aligned reads displayed.

ACCTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGCCAAGGTGA  >  USA300TCH1516_ALE/924421‑924600

aCCTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTaaa                                                                                           <  1:1092587/91‑1 (MQ=255)

aCCTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTaaa                                                                                           >  2:1515290/1‑91 (MQ=255)

aCCTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTaaa                                                                                           >  2:2833517/1‑91 (MQ=255)

aCCTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTaaa                                                                                           >  2:740027/1‑91 (MQ=255)

 ccTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTGAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAAc                                                                                          >  1:3948727‑M2/1‑90 (MQ=255)

  cTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAAca                                                                                         >  2:3040798‑M2/1‑89 (MQ=255)

    tCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAAcatt                                                                                       >  2:3318181‑M2/1‑87 (MQ=255)

      aCGTAAACATTTAAAGGATCAAAAATATTACACGCCATTTGAGGTGGGTAACTTAAGAAAACAGGCAAACGATAAAGGGTTTAAACATTGc                                                                                     >  1:2399222/1‑91 (MQ=255)

       cGTAAACAAAAAAAGGAACAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAAcattgcc                                                                                    >  2:2441097‑M2/1‑84 (MQ=255)

          aaaCATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTCAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAg                                                                                 >  2:1374693/1‑91 (MQ=255)

          aaaCATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAg                                                                                 >  1:2933585/1‑91 (MQ=255)

          aaaCATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAg                                                                                 >  1:3593012/1‑91 (MQ=255)

          aaaCATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAg                                                                                 <  1:2649011/91‑1 (MQ=255)

          aaaCATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAg                                                                                 <  2:921716/91‑1 (MQ=255)

           aaCATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGc                                                                                >  1:1014982/1‑91 (MQ=255)

           aaCATATAAAGGTTCAAAAATATTATACGCCTTTAGAGTATGGTAAATTAAGACAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGc                                                                                <  1:3673256/91‑1 (MQ=255)

            aCATTTAAAGGATCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCt                                                                               <  1:1515290/91‑1 (MQ=255)

               tttAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGa                                                                            >  1:1836252/1‑91 (MQ=255)

               tttAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGa                                                                            <  2:1637327/91‑1 (MQ=255)

               tttAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGa                                                                            <  2:2760309/91‑1 (MQ=255)

               tttAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGa                                                                            >  1:1624439/1‑91 (MQ=255)

                ttAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGAc                                                                           <  1:2779560/91‑1 (MQ=255)

                 tAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGAcc                                                                          >  1:178912/1‑91 (MQ=255)

                 tAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGAcc                                                                          >  1:1500173/1‑91 (MQ=255)

                 tAAAGGTTCAAAAATATTACACGCCTTTAGAGATTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGAcc                                                                          >  1:116205/1‑91 (MQ=255)

                  aaaGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCt                                                                         >  2:3876/1‑91 (MQ=255)

                   aaGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCtt                                                                        >  1:1889606/1‑91 (MQ=255)

                   aaGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCtt                                                                        >  1:3915380/1‑91 (MQ=255)

                   aaGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCtt                                                                        <  1:3554322/91‑1 (MQ=255)

                   aaGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCtt                                                                        <  2:339554/91‑1 (MQ=255)

                      gTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAg                                                                     <  2:719652/91‑1 (MQ=255)

                       ttCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGt                                                                    <  1:3187386/91‑1 (MQ=255)

                       ttCAAAAATATTACACGCCCTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGt                                                                    >  2:2629405/1‑91 (MQ=255)

                         cAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTAc                                                                  <  1:826224/91‑1 (MQ=255)

                         cAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTAc                                                                  >  2:1415280/1‑91 (MQ=255)

                           aaaaTATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGt                                                                <  2:2004555/91‑1 (MQ=255)

                            aaaTATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTa                                                               >  1:2260421/1‑91 (MQ=255)

                             aaTATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAg                                                              <  1:2557636/91‑1 (MQ=255)

                             aaTATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAg                                                              <  1:687912/91‑1 (MQ=255)

                              atatTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGt                                                             >  2:2477336/1‑91 (MQ=255)

                               tatTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGtt                                                            >  2:3028546/1‑91 (MQ=255)

                               tatTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGtt                                                            >  1:524505/1‑91 (MQ=255)

                                atTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTc                                                           <  2:769734/91‑1 (MQ=255)

                                atTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTc                                                           >  1:1469588/1‑91 (MQ=255)

                                 ttACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCt                                                          >  1:2149179/1‑91 (MQ=255)

                                   acacGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTa                                                        >  2:3223152/1‑91 (MQ=255)

                                   acacGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTa                                                        >  1:3650532/1‑91 (MQ=255)

                                    cacGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTAt                                                       >  1:938806/1‑91 (MQ=255)

                                    cacGCCTTTAGAGTTTGGTAAATTAAGAAAAGCGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTAt                                                       >  2:3880171/1‑91 (MQ=255)

                                      cGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCa                                                     >  1:1353020/1‑91 (MQ=255)

                                       gCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACATAGTTCTTATCAt                                                    <  2:1252863/91‑1 (MQ=255)

                                        ccTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAGGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATg                                                   <  2:764433/91‑1 (MQ=255)

                                        ccTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATg                                                   <  2:3859692/91‑1 (MQ=255)

                                        ccTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATg                                                   <  1:119520/91‑1 (MQ=255)

                                         cTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGc                                                  <  1:493705/91‑1 (MQ=255)

                                             agagTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGAt                                              >  2:2094801/1‑91 (MQ=255)

                                                gTTTGGTAAATTAAGATTTGTGGCATTGGATAAAGGGTTTATTCATTGCTAAGCTGGACCTTTTGTACGTAGTTCTTATCATGCGGATGAg                                           <  2:225832/91‑1 (MQ=255)

                                                  ttGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCa                                         >  2:1028024/1‑91 (MQ=255)

                                                  ttGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCa                                         >  1:1295356/1‑91 (MQ=255)

                                                    ggTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAg                                       >  1:2244508/1‑91 (MQ=255)

                                                      tAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTa                                     >  1:2682211/1‑91 (MQ=255)

                                                         aTTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAAt                                  <  1:1854349/91‑1 (MQ=255)

                                                          ttAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATg                                 <  2:1705607/91‑1 (MQ=255)

                                                          ttAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATg                                 >  2:2879195/1‑91 (MQ=255)

                                                            aaGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGaa                               <  2:2730220/91‑1 (MQ=255)

                                                            aaGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGaa                               >  1:2598965/1‑91 (MQ=255)

                                                             aGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGAGCTTTAGTACGTAGTTCTTAACATGCGGATGAGCAAGTAAATGAAg                              <  2:947372/91‑1 (MQ=255)

                                                             aGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAg                              >  2:443488/1‑91 (MQ=255)

                                                             aGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAg                              >  1:2610489/1‑91 (MQ=255)

                                                              gAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAgc                             >  2:3594955/1‑91 (MQ=255)

                                                                aaaGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAgctg                           <  1:2033061/91‑1 (MQ=255)

                                                                aaaGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAgctg                           <  1:934805/91‑1 (MQ=255)

                                                                 aaGTGGCAATGGATAAAGGGTTTAAACATTGCGAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAgctgc                          <  2:512816/91‑1 (MQ=255)

                                                                 aaGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAgctgc                          <  2:3613079/91‑1 (MQ=255)

                                                                 aaGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTGTAGTACGTAGTTCTTATCATGCGGATGCGCAAGTAAATGAAgctgc                          <  2:3126662/91‑1 (MQ=255)

                                                                  aGTGGCAATGGATAAAGGGTTTGAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAgctgct                         <  2:3194251/91‑1 (MQ=255)

                                                                   gTGGGAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTa                        <  2:3944903/91‑1 (MQ=255)

                                                                   gTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTa                        >  1:1140640/1‑91 (MQ=255)

                                                                    tGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTaa                       >  1:1725313/1‑91 (MQ=255)

                                                                      gCAATGGATAAAGGGTTTAAAcattgccacttttcttaatttaccaaactctaaaggcgtgtaatatttttgaacctttaaatgtttacgt                     <  2:3493459‑M2/91‑71 (MQ=255)

                                                                          tGGATAAAGGGTTTAAAcattgccacttttcttaatttaccaaactctaaaggcgtgtaatatttttgaacctttaaatgtttacgtgaag                 <  1:2342505‑M2/91‑75 (MQ=255)

                                                                           ggATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAg                <  1:3889529/91‑1 (MQ=255)

                                                                            gATAAAGGGTTTAAAcattgccacttttcttaatttaccaaactctaaaggcgtgtaatatttttgaacctttaaatgtttacgtgaaggt               <  1:3017835‑M2/91‑77 (MQ=255)

                                                                            gATAAAGGGTTTAAAcattgccacttttcttaatttaccaaactctaaaggcgtgtaatatttttgaacctttaaatgtttacgtgaaggt               <  1:459075‑M2/91‑77 (MQ=255)

                                                                            gATAAAGGGTTTAAAcattgccacttttcttaatttaccaaactctaaaggcgtgtaatatttttgaacctttaaatgtttacgtgaaggt               <  2:1526125‑M2/91‑77 (MQ=255)

                                                                             aTAAAGGGTTTAAAcattgccacttttcttaatttaccaaactctaaaggcgtgtaatatttttgaacctttaaatgtttacgtgaaggtt              <  1:1775065‑M2/91‑78 (MQ=255)

                                                                             aTAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCa              <  1:2172782/91‑1 (MQ=255)

                                                                              tAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCaa             <  2:1600849/91‑1 (MQ=255)

                                                                               aaaGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAAc            <  2:2156030/91‑1 (MQ=255)

                                                                               aaaGGGTATAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAAc            <  1:1967203/91‑1 (MQ=255)

                                                                                aaGGGTTTAAAcattgccacttttcttaatttaccaaactctaaaggcgtgtaatatttttgaacctttaaatgtttacgtgaaggttgta           <  2:3803282‑M2/91‑81 (MQ=255)

                                                                                aaGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACg           >  2:115514/1‑91 (MQ=255)

                                                                                 aGGGTTTAAACATTGCCAAGCTGGCCCTTTAGTACGTAGTTCTTATCATGGGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGc          <  2:3666047/91‑1 (MQ=255)

                                                                                 aGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGc          >  1:2847996/1‑91 (MQ=255)

                                                                                  gggTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGcc         <  2:2517169/91‑1 (MQ=255)

                                                                                  gggTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCGTATCATGCGGATGAGCAAGGAAATGAAGCTGCTAAAGAAAAGCAACGcc         <  2:1867910/91‑1 (MQ=255)

                                                                                   ggTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGCCa        >  1:3315495/1‑91 (MQ=255)

                                                                                         aaCATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGCCAAGGTGa  <  1:2703093/91‑1 (MQ=255)

                                                                                         aaCATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGCCAAGGTGa  <  2:554770/91‑1 (MQ=255)

                                                                                         aaCATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGCCAAGGTGa  <  1:3765048/91‑1 (MQ=255)

ACCTTCACGTAAACATTTAAAGGTTCAAAAATATTACACGCCTTTAGAGTTTGGTAAATTAAGAAAAGTGGCAATGGATAAAGGGTTTAAACATTGCCAAGCTGGACCTTTAGTACGTAGTTCTTATCATGCGGATGAGCAAGTAAATGAAGCTGCTAAAGAAAAGCAACGCCAAGGTGA  >  USA300TCH1516_ALE/924421‑924600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.