BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	971394 =	213 (1.050)	23 (0.130)	11/142	NT	11.4%	intergenic (+22/+149)	USA300HOU_RS04810/cdr	hypothetical protein/Coenzyme A disulfide reductase
*	?	USA300TCH1516_ALE	971435 =	170 (0.940)	23 (0.130)	11/142	NT	11.4%	intergenic (+63/+108)	USA300HOU_RS04810/cdr	hypothetical protein/Coenzyme A disulfide reductase

Only 100 of 258 total aligned reads displayed.

TATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAGATTAGAT  >  USA300TCH1516_ALE/971345‑971525

  tactatccagtccattttttatgtttaacatttttagaatcaaagaaGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCttt                                                                                           >  1:3136514‑M1/48‑91 (MQ=255)

    tCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCttttt                                                                                         <  1:1932895/91‑1 (MQ=255)

      aaaaTTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTg                                                                                       >  1:549157/1‑91 (MQ=255)

       aaaTTATACGGTATTGGCTAATTGATAAGACATATAGTATCTGACATCAGGCATGGACAATTATTACCCCAAGACCCTATGTCTTTTTTgt                                                                                      >  2:3675834/1‑90 (MQ=255)

        aaTTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGAt                                                                                     >  1:1586248/1‑91 (MQ=255)

          ttattCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTc                                                                                   <  1:2578787/91‑1 (MQ=255)

            attCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTa                                                                                 <  2:2833224/91‑1 (MQ=255)

            attCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTa                                                                                 <  1:2033983/91‑1 (MQ=255)

              tCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTaaa                                                                               >  1:2260197/1‑91 (MQ=255)

              tCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTaaa                                                                               >  2:1680539/1‑91 (MQ=255)

               cGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTaaaa                                                                              >  1:2986292/1‑91 (MQ=255)

               cGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTaaaa                                                                              >  1:1730908/1‑91 (MQ=255)

               cGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTaaaa                                                                              >  1:2006510/1‑91 (MQ=255)

                ggTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTaaaaa                                                                             >  1:895798/1‑91 (MQ=255)

                 gTATTGGCTAATTGATAAGACATAGAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAAt                                                                            <  2:3676698/91‑1 (MQ=255)

                  tATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATg                                                                           >  1:3101790/1‑91 (MQ=255)

                  tATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTC‑TTTTTGATTCTAAAAATG‑t                                                                         <  2:2612041/91‑1 (MQ=255)

                     tGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTa                                                                       >  2:2174557/1‑91 (MQ=255)

                     tGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTa                                                                       >  2:2475070/1‑91 (MQ=255)

                      ggCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTaa                                                                      >  1:928933/1‑91 (MQ=255)

                       gCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTaaa                                                                     <  1:1770047/91‑1 (MQ=255)

                        cTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAAc                                                                    <  1:2926884/91‑1 (MQ=255)

                        cTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAAc                                                                    >  1:2749389/1‑91 (MQ=255)

                         tAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACa                                                                   <  1:1211904/91‑1 (MQ=255)

                         tAATTGAGAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACa                                                                   <  1:2654659/91‑1 (MQ=255)

                          aaTTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACAt                                                                  >  1:1941567/1‑91 (MQ=255)

                          aaTTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACAt                                                                  >  2:3392849/1‑91 (MQ=255)

                           aTTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATa                                                                 <  1:1804400/91‑1 (MQ=255)

                             tGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATaaa                                                               <  2:2693245/91‑1 (MQ=255)

                               aTAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATaaaaa                                                             >  1:1840584/1‑91 (MQ=255)

                                tAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATaaaaaa                                                            <  2:1711152/91‑1 (MQ=255)

                                tAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATaaaaaa                                                            <  1:1314211/91‑1 (MQ=255)

                                  aGACATATAGTATATGACATAAGGCAAGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATg                                                          <  2:364760/91‑1 (MQ=255)

                                   gACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATgg                                                         <  2:798203/91‑1 (MQ=255)

                                    aCATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATCAAAAATGGa                                                        >  1:3547237/1‑91 (MQ=255)

                                    aCATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGa                                                        <  1:2975565/91‑1 (MQ=255)

                                    aCATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGa                                                        >  1:2426535/1‑91 (MQ=255)

                                    aCATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGa                                                        >  1:2841626/1‑91 (MQ=255)

                                     cATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGAc                                                       <  1:3730149/91‑1 (MQ=255)

                                         taGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTggt                                                   <  1:3007333/91‑2 (MQ=255)

                                         taGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGa                                                   >  2:253152/1‑91 (MQ=255)

                                         taGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGa                                                   >  1:623147/1‑91 (MQ=255)

                                            tataTGACCTAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTCGATTCTAAAAATG‑CTAAACATAAAAAATGGACTGGAtag                                                >  2:2750082/1‑91 (MQ=255)

                                            aaaaagacataaggtcttggactaataattgtccatgccttatgtcATTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGAtag                                                >  1:2803782‑M2/47‑91 (MQ=255)

                                             atatGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGAtagt                                               >  1:1452199/1‑91 (MQ=255)

                                              tatGACATAGGGCATGGACAATTAGTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAACATG‑TTAAACATAAAAAATGGACTGGAtagta                                              <  2:16083/91‑1 (MQ=255)

                                              tatGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGAtagta                                              >  1:1064092/1‑91 (MQ=255)

                                               atGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGAtagtag                                             >  2:1930949/1‑91 (MQ=255)

                                                 gacataaggtcttggactaataattgtccatgccttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAgtagta                                           >  1:3264530‑M2/42‑91 (MQ=255)

                                                 GACATAAGGCATGGATAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAAAAAAAAAAATGGACTGGATAgtagta                                           >  2:2405264‑M1/1‑91 (MQ=255)

                                                 GACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAgtagta                                           >  2:127901‑M1/1‑91 (MQ=255)

                                                    ATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGtacta                                        <  2:863213‑M1/91‑3 (MQ=255)

                                                     tacggtcttggactcataattgtccatgccttatgtcTTTTTTGATTCCACAACTG‑TTCAACATAAAAAATGGCCTGCATCGTAGTACCAg                                       >  2:602414‑M2/38‑91 (MQ=255)

                                                     taaggtcttggactaataattgtccatgccttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAg                                       >  2:2050989‑M2/38‑91 (MQ=255)

                                                     taaggtcttggactaataattgtccatgccttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAg                                       >  1:438778‑M2/38‑91 (MQ=255)

                                                     TAAGGCATGGACAAGTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTGAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAg                                       >  2:221160‑M1/1‑91 (MQ=255)

                                                        ggtcttggactaataattgtccatgccttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTcc                                    >  1:3346183‑M2/35‑91 (MQ=255)

                                                        GGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTcc                                    >  2:2322423‑M1/1‑91 (MQ=255)

                                                          tcttggactaataattgtccatgccttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCaa                                  >  2:330906‑M2/33‑91 (MQ=255)

                                                          tcttggactaataattgtccatgccttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCaa                                  >  1:179385‑M2/33‑91 (MQ=255)

                                                          cATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCaa                                  <  1:528386/91‑1 (MQ=255)

                                                           aTGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAAc                                 >  1:278093/1‑91 (MQ=255)

                                                           aTGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAAc                                 >  1:1763518/1‑91 (MQ=255)

                                                           aTGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAAc                                 >  1:583860/1‑91 (MQ=255)

                                                            tGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATGTTTAAACATAAAAAAAGGACTGGATAGTAGTACCAGTCCAAc                                 <  1:2487216/91‑1 (MQ=255)

                                                            tGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACa                                <  2:147401/91‑1 (MQ=255)

                                                            tGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACa                                <  2:3428976/91‑1 (MQ=255)

                                                             ggACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAGCAt                               <  2:3510413/91‑1 (MQ=255)

                                                             ggACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACAt                               >  2:373494/1‑91 (MQ=255)

                                                              gACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATa                              >  1:3879940/1‑91 (MQ=255)

                                                              gACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATa                              <  1:2513525/91‑1 (MQ=255)

                                                               aCAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATaa                             >  2:3952860/1‑91 (MQ=255)

                                                                cAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAAt                            <  2:2967894/91‑1 (MQ=255)

                                                                 ctaataattgtccatgccttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAAtt                           >  2:1770‑M2/26‑91 (MQ=255)

                                                                   ttattaGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGCAGTACCAGTCCAACATAATTCt                         >  2:3178926/1‑91 (MQ=255)

                                                                    tattaGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTa                        >  2:3262349/1‑91 (MQ=255)

                                                                        aGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCt                    <  2:549157/91‑1 (MQ=255)

                                                                        aGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCt                    >  2:1147452/1‑91 (MQ=255)

                                                                        aGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCt                    >  1:3862579/1‑91 (MQ=255)

                                                                         gTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTa                   <  2:698512/91‑1 (MQ=255)

                                                                         gTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTa                   <  2:1241377/91‑1 (MQ=255)

                                                                          tCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAg                  >  2:2813146/1‑91 (MQ=255)

                                                                          tCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAg                  <  1:3472950/91‑1 (MQ=255)

                                                                           ccAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGa                 <  1:692528/91‑1 (MQ=255)

                                                                           ccAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TAAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGa                 <  2:3778652/91‑1 (MQ=255)

                                                                             aaGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACa               <  2:224474/91‑1 (MQ=255)

                                                                               gACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAAt             >  2:292928/1‑91 (MQ=255)

                                                                                aCCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAAtt            >  2:35750/1‑91 (MQ=255)

                                                                                aCCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAAtt            >  2:2281936/1‑91 (MQ=255)

                                                                                  cttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTaa          >  1:1408297‑M2/9‑91 (MQ=255)

                                                                                   ttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAg         >  2:744685‑M2/8‑91 (MQ=255)

                                                                                   ttatgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAg         <  2:445805‑M2/84‑1 (MQ=255)

                                                                                   ttatgtcTTTTTCGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAg         >  1:3033926‑M2/8‑91 (MQ=255)

                                                                                     atgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAGAt       >  1:1521394‑M2/6‑91 (MQ=255)

                                                                                     atgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAGAt       <  1:3757179‑M2/86‑1 (MQ=255)

                                                                                      tgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTCAGAtt      >  2:1341505‑M2/5‑91 (MQ=255)

                                                                                      tgtcTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAGAtt      <  1:3573924‑M2/87‑1 (MQ=255)

                                                                                         cTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAGATTAGa   <  2:1002709‑M2/90‑1 (MQ=255)

                                                                                         cTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAGATTAGa   <  1:2056765‑M2/90‑1 (MQ=255)

                                                                                          ttttttGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAagattagat  <  2:2359416/91‑1 (MQ=255)

TATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGCATGGACAATTATTAGTCCAAGACCTTATGTCTTTTTTGATTCTAAAAATG‑TTAAACATAAAAAATGGACTGGATAGTAGTACCAGTCCAACATAATTCTAACCTAGACAATTAAGATTAGAT  >  USA300TCH1516_ALE/971345‑971525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.