BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 979665	216 (1.060)	11 (0.060)	8/144	NT	5.0%	coding (594/870 nt)	ampR	HTH‑type transcriptional activator AmpR
*	?	USA300TCH1516_ALE	= 979685	220 (1.200)	11 (0.060)	8/144	NT	5.0%	coding (574/870 nt)	ampR	HTH‑type transcriptional activator AmpR

Only 100 of 287 total aligned reads displayed.

AAGTATGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACC  >  USA300TCH1516_ALE/979595‑979775

 aGTATGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTa                                                                                           >  2:1117218‑M2/1‑90 (MQ=255)

 aGTATGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTa                                                                                           <  1:3568297‑M2/91‑2 (MQ=255)

  gTATGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTat                                                                                          <  1:1760558‑M2/91‑3 (MQ=255)

  gTATGCACATCATTGATAGATAGAAATTGTGCCTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTat                                                                                          <  1:1319763‑M2/91‑3 (MQ=255)

    aTGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatca                                                                                        >  2:1303275‑M2/1‑87 (MQ=255)

     tGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcac                                                                                       <  2:1507701‑M2/91‑6 (MQ=255)

     tGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcac                                                                                       >  1:72761‑M2/1‑86 (MQ=255)

      gCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcact                                                                                      >  2:2509516‑M2/1‑85 (MQ=255)

       cacaTCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcactt                                                                                     >  2:2541565‑M2/1‑84 (MQ=255)

       cacaTCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcactt                                                                                     >  1:2266153‑M2/1‑84 (MQ=255)

         catcatTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACttat                                                                                   >  2:2668007/1‑91 (MQ=255)

            catTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTtattat                                                                                >  2:2147831/1‑91 (MQ=255)

              ttGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                              <  1:3318028/91‑1 (MQ=255)

              ttGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                              <  2:610528/91‑1 (MQ=255)

              ttGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                              <  1:3718767/91‑1 (MQ=255)

              ttGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                              <  1:3845625/91‑1 (MQ=255)

               tGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAtttt                                                                             >  2:746331/1‑91 (MQ=255)

               tGATAGATAGAAACTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATGCTGGATGGTTATCACTTATTAtttt                                                                             <  2:2951684/91‑1 (MQ=255)

                gatagataGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTg                                                                            <  2:2417193/91‑1 (MQ=255)

                gatagataGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTg                                                                            >  1:1919764/1‑91 (MQ=255)

                 atagatagAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGt                                                                           >  2:3296169/1‑91 (MQ=255)

                  tagatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTa                                                                          <  1:2116353/91‑1 (MQ=255)

                  tagatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTa                                                                          <  2:3715609/91‑1 (MQ=255)

                  tagatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTa                                                                          <  2:245796/91‑1 (MQ=255)

                   agatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAt                                                                         >  2:1138491/1‑91 (MQ=255)

                     atagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAttt                                                                       <  1:433251/91‑1 (MQ=255)

                     atagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAttt                                                                       >  1:251137/1‑91 (MQ=255)

                      tagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAtttt                                                                      >  2:2164358/1‑91 (MQ=255)

                      tagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAtttt                                                                      <  2:1920939/91‑1 (MQ=255)

                       agaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGAGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAttttt                                                                     <  2:2215748/91‑1 (MQ=255)

                        gaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTc                                                                    <  1:3746562/91‑1 (MQ=255)

                         aaaTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCa                                                                   <  2:121810/91‑1 (MQ=255)

                         aaaTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCa                                                                   <  2:406985/91‑1 (MQ=255)

                          aaTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaa                                                                  <  2:3213613/91‑1 (MQ=255)

                          aaTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaa                                                                  <  2:3370871/91‑1 (MQ=255)

                           aTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaaa                                                                 >  1:2878516/1‑91 (MQ=255)

                           aTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaaa                                                                 <  2:2199315/91‑1 (MQ=255)

                           aTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaaa                                                                 <  2:1794588/91‑1 (MQ=255)

                           aTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaaa                                                                 <  2:1999432/91‑1 (MQ=255)

                           aTTGGGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATAGTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaaa                                                                 <  2:164136/91‑1 (MQ=255)

                            ttGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATGTTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAAt                                                                <  2:3253185/91‑1 (MQ=255)

                                gCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATCTTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAg                                                            >  2:3553982/1‑91 (MQ=255)

                                  tttttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGAt                                                          >  1:787785/1‑91 (MQ=255)

                                   ttttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATg                                                         >  2:2129775/1‑91 (MQ=255)

                                   ttttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATg                                                         >  1:3524486/1‑91 (MQ=255)

                                   ttttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATg                                                         >  2:453588/1‑91 (MQ=255)

                                    tttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGc                                                        >  1:1547512/1‑91 (MQ=255)

                                     ttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGcc                                                       >  1:993794/1‑91 (MQ=255)

                                     ttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGcc                                                       <  1:889702/91‑1 (MQ=255)

                                      tCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCt                                                      <  1:2658057/91‑1 (MQ=255)

                                      tCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCt                                                      <  2:1654803/91‑1 (MQ=255)

                                          aaaTATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGt                                                  <  1:14214/91‑1 (MQ=255)

                                          aaaTATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGt                                                  >  2:1366900/1‑91 (MQ=255)

                                           attttttAAAATATTATTTTTAAGTGATGACCCATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTAAGtt                                                 >  2:1044678/5‑91 (MQ=255)

                                           aaTATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGtt                                                 >  2:2451555/1‑91 (MQ=255)

                                            atatTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTa                                                >  1:1778410/1‑91 (MQ=255)

                                             tatTTAAAATATTATTTTTACGTGATGACCATTATATTGGCTGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTag                                               >  2:2792267/1‑91 (MQ=255)

                                             tatTTAAAATATTATTTTTAAGTGATGACCAATGTTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTag                                               <  1:3233253/91‑1 (MQ=255)

                                              atTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTaga                                              <  2:3869050/91‑1 (MQ=255)

                                              atTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTaga                                              >  1:1215018/1‑91 (MQ=255)

                                                 tacaaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTagacga                                           >  2:3606030/4‑91 (MQ=255)

                                                 tAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcacttaaaaataatattttaaatatttatgcaaaagcacaatttcta                                           <  2:3040115‑M2/91‑50 (MQ=255)

                                                 tAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcacttaaaaataatattttaaatatttatgaaaaagcacaatttcta                                           <  1:2731274‑M2/91‑50 (MQ=255)

                                                 tAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTagaaga                                           <  1:839558/91‑1 (MQ=255)

                                                  aaaaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTatcacttaaaaataatattttaaatatttatgaaaaagcacaatttctat                                          <  2:2729382‑M2/91‑51 (MQ=255)

                                                  aaaaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgat                                          <  1:1800597/91‑1 (MQ=255)

                                                  aaaaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgat                                          <  2:2765277/91‑1 (MQ=255)

                                                    aaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgatga                                        >  2:1190537/1‑91 (MQ=255)

                                                        ttattTTTAAGTGATGACCAATATTCTGGATGGTTatcacttaaaaataatattttaaatatttatgaaaaagcacaatttctatctatca                                    <  2:2317707‑M2/91‑57 (MQ=255)

                                                          attTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATtc                                  >  1:3451409/1‑91 (MQ=255)

                                                           tttttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATtct                                 <  1:1167866/91‑1 (MQ=255)

                                                           tttttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATtct                                 <  1:2917529/91‑1 (MQ=255)

                                                             tttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTctct                               <  2:866571/91‑1 (MQ=255)

                                                              ttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCtt                              <  2:2044769/91‑1 (MQ=255)

                                                              ttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCtt                              <  1:2415045/91‑1 (MQ=255)

                                                                 aGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTAt                           <  2:2356026/91‑1 (MQ=255)

                                                                  gTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTAtt                          >  1:1677337/1‑91 (MQ=255)

                                                                   tgatgaCCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTg                         <  1:3913129/91‑1 (MQ=255)

                                                                      tgaCCAATATTCTGGATGGTTatcacttaaaaataatattttaaatatttatgaaaaagcacaatttctatctatcaatgatgtgcatact                      <  1:534256‑M2/91‑71 (MQ=255)

                                                                      tgaCCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGa                      <  1:3179708/91‑1 (MQ=255)

                                                                        aCCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGc                    <  1:3497261/91‑1 (MQ=255)

                                                                          cAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaa                  >  2:1703746/1‑91 (MQ=255)

                                                                            atatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatc                >  1:245451/1‑91 (MQ=255)

                                                                            atatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatc                >  1:2049387/1‑91 (MQ=255)

                                                                            atatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatc                >  1:365486/1‑91 (MQ=255)

                                                                            atatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatc                >  2:1165513/1‑91 (MQ=255)

                                                                             tatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatca               >  1:2517593/1‑91 (MQ=255)

                                                                             tatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatca               <  1:1081898/91‑1 (MQ=255)

                                                                              atTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatcaa              >  2:977433/1‑91 (MQ=255)

                                                                               ttCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatcaat             <  1:1094931/91‑1 (MQ=255)

                                                                                tCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGAAATCAATa            >  2:698448/1‑91 (MQ=255)

                                                                                 cTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATAc           >  2:2613668/1‑91 (MQ=255)

                                                                                   ggATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACaa         >  2:1747884/1‑91 (MQ=255)

                                                                                    gATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAt        <  2:3029930/91‑1 (MQ=255)

                                                                                    gATGGTTATCACGGATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTGAGAAGATGATTATTCTCTTTATTGGGCGCAATCAATACaag        <  2:76921/91‑2 (MQ=255)

                                                                                     aTGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAtt       <  2:3696380/91‑1 (MQ=255)

                                                                                       ggTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAAAACAAtttt     <  2:3172388/91‑1 (MQ=255)

                                                                                         ttATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTAc   <  1:833320/91‑1 (MQ=255)

                                                                                          tATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTAcc  >  2:3340054/1‑91 (MQ=255)

                                                                                          tATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTAcc  >  2:1630900/1‑91 (MQ=255)

AAGTATGCACATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACC  >  USA300TCH1516_ALE/979595‑979775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.