BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1005781 =	188 (0.920)	30 (0.170)	14/138	NT	15.8%	intergenic (+417/+43)	pepF1_1/USA300HOU_RS04965	Oligoendopeptidase F, plasmid/hypothetical protein
*	?	USA300TCH1516_ALE	1005817 =	157 (0.900)	30 (0.170)	14/138	NT	15.8%	intergenic (+453/+7)	pepF1_1/USA300HOU_RS04965	Oligoendopeptidase F, plasmid/hypothetical protein

Only 100 of 311 total aligned reads displayed.

GATGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGGC  >  USA300TCH1516_ALE/1005727‑1005907

gATGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATAAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGACTTTa                                                                                            >  2:2665309/1‑91 (MQ=255)

 aTGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTaa                                                                                           <  1:3326529/91‑1 (MQ=255)

 aTGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTaa                                                                                           <  1:1482745/91‑1 (MQ=255)

  tgtgTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAat                                                                                          >  1:1194895/1‑91 (MQ=255)

   gtgtAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatt                                                                                         >  2:2463478/1‑91 (MQ=255)

     gtAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAattta                                                                                       >  2:2905191/1‑91 (MQ=255)

      tAACATTACGATCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTC‑TTAatttatt                                                                                     <  2:1555913/91‑1 (MQ=255)

       aaCATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttatt                                                                                     >  1:1573799/1‑91 (MQ=255)

         cATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTCCATTTATGGTGTACGAGGTCTTTAatttattta                                                                                   >  2:921268/1‑91 (MQ=255)

         cATTACGTTCTAATAATTTAAGGTTGAAAAATTATGAGTCAGTAAATTGACCTCGTTACATTAATAGTGTACGAGGTATCTAatatagtta                                                                                   <  2:3819011/91‑1 (MQ=255)

          aTTACGTTCTAACAATTTAATGTCGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttatttat                                                                                  >  2:1729199/1‑91 (MQ=255)

           ttACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttatttatt                                                                                 <  1:2457872/91‑1 (MQ=255)

           ttACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttatttatt                                                                                 <  1:494068/91‑1 (MQ=255)

             aCGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTAtttt                                                                               <  1:79086/91‑1 (MQ=255)

              cGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttg                                                                              >  2:2519942/1‑91 (MQ=255)

              cGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttg                                                                              >  2:2359481/1‑91 (MQ=255)

               gTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttga                                                                             <  2:2058314/91‑1 (MQ=255)

               gTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttga                                                                             >  2:1952403/1‑91 (MQ=255)

               gTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATCTATtttga                                                                             >  2:3430007/1‑91 (MQ=255)

               gTTCTAATAATTAAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttga                                                                             >  1:3035686/1‑91 (MQ=255)

                ttCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgat                                                                            <  2:1324382/91‑1 (MQ=255)

                ttCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgat                                                                            <  2:673099/91‑1 (MQ=255)

                 tctaaTAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgatt                                                                           >  2:260322‑M2/6‑91 (MQ=255)

                 tctaaTAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgatt                                                                           <  2:3748784‑M2/86‑1 (MQ=255)

                  ttaaTAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgattt                                                                          <  2:3924651‑M2/87‑1 (MQ=255)

                  ctaaTAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgattt                                                                          >  2:2690295‑M2/5‑91 (MQ=255)

                  ctaaTAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgattt                                                                          <  1:1087892‑M2/87‑1 (MQ=255)

                       aatTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTgatttgattt                                                                     <  1:871512/91‑1 (MQ=255)

                         tttAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTa                                                                   >  1:2662097/1‑91 (MQ=255)

                         tttAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTa                                                                   <  1:3851952/91‑1 (MQ=255)

                           tAATGTTTCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTGAgg                                                                 <  2:3506944/91‑1 (MQ=255)

                            aaTGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGc                                                                >  2:1414632/1‑91 (MQ=255)

                             aTGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCa                                                               >  1:1343440/1‑91 (MQ=255)

                             aTGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCa                                                               >  2:509104/1‑91 (MQ=255)

                              tGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCAt                                                              >  1:2586402/1‑91 (MQ=255)

                               gTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCAtt                                                             <  1:3100999/91‑1 (MQ=255)

                                ttGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCAttt                                                            <  1:1630720/91‑1 (MQ=255)

                                  gCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTa                                                          >  2:2278400/1‑91 (MQ=255)

                                    aaaaTTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGa                                                        >  1:3570847/1‑91 (MQ=255)

                                          aaGAGTAAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCa                                                  <  2:78059/91‑1 (MQ=255)

                                            gagTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGa                                                >  1:1770222/1‑91 (MQ=255)

                                            gagTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGa                                                >  1:3789272/1‑91 (MQ=255)

                                             agTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGaa                                               >  1:2539212/1‑91 (MQ=255)

                                             agTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGaa                                               >  1:1408025/1‑91 (MQ=255)

                                              gTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGaaa                                              >  1:1223522/1‑91 (MQ=255)

                                              aataaattaaagacctcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGaaa                                              >  1:297199‑M2/45‑91 (MQ=255)

                                                 aGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCg                                           <  2:2482949/91‑1 (MQ=255)

                                                   tAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGcc                                         >  2:2123980/1‑91 (MQ=255)

                                                   tAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGcc                                         >  1:2029041/1‑91 (MQ=255)

                                                   tAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGcc                                         <  1:322269/91‑1 (MQ=255)

                                                     taaagacctcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGACAt                                       >  2:2033837‑M2/38‑91 (MQ=255)

                                                       AAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCt                                     <  2:1836188‑M1/91‑1 (MQ=255)

                                                         GACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTgg                                   >  2:3590242‑M1/1‑91 (MQ=255)

                                                          ACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGa                                  <  1:2926255‑M1/91‑1 (MQ=255)

                                                           cctcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGat                                 >  1:707054‑M2/32‑91 (MQ=255)

                                                            ctcgtacaccataaatgtaacgcggtctttAATTTATCTATTTTGACTTGATCTTCGGCATTTTAGATTTCCAGAAATCGCCATCTGGata                                >  2:760973‑M2/31‑91 (MQ=255)

                                                            CTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGata                                <  2:3688885‑M1/91‑1 (MQ=255)

                                                            CTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGata                                >  1:573251‑M1/1‑91 (MQ=255)

                                                             tcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGatat                               >  1:2423119‑M2/30‑91 (MQ=255)

                                                             TCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGatat                               >  2:278100‑M1/1‑91 (MQ=255)

                                                              CGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATAtt                              <  2:2299468‑M1/91‑1 (MQ=255)

                                                               gtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATAttt                             >  1:624646‑M2/28‑91 (MQ=255)

                                                                tacaccataaatgtaacgaggtctttACTTTATTCCTTTTGATTTGCTTTTAGGCATTTTAGATTTCCAGAAATAGCCATCTGGATATTTa                            >  2:1199807‑M2/27‑91 (MQ=255)

                                                                 acaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTaa                           >  1:2253293‑M2/26‑91 (MQ=255)

                                                                 acaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTaa                           >  1:1954909‑M2/26‑91 (MQ=255)

                                                                  caccataactgtaacgaggtcttaAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCGGGATATTTAAg                          >  2:1653485‑M2/25‑91 (MQ=255)

                                                                   accataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGt                         >  1:2066446‑M2/24‑91 (MQ=255)

                                                                    ccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGtt                        >  1:2121522‑M2/23‑91 (MQ=255)

                                                                     tttATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGttt                       >  1:1270448/1‑91 (MQ=255)

                                                                      ttATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGtttt                      <  2:1013849/91‑1 (MQ=255)

                                                                      ttATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGtttt                      <  1:7151/91‑1 (MQ=255)

                                                                       tATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGttttt                     <  1:2387820/91‑1 (MQ=255)

                                                                       tATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGttttt                     >  1:1300697/1‑91 (MQ=255)

                                                                       tATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGttttt                     <  1:1813349/91‑1 (MQ=255)

                                                                        aaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTc                    >  1:1026099‑M2/19‑91 (MQ=255)

                                                                        aTGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTc                    <  2:168246/91‑1 (MQ=255)

                                                                        aTGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTc                    <  2:1096520/91‑1 (MQ=255)

                                                                        aTGGTGTACGAGGTCTTTAATTTATGTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGGAATCGCCATCTGGATATTTAAGTTTTTc                    <  1:111497/91‑1 (MQ=255)

                                                                         tGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCa                   >  1:2794871/1‑91 (MQ=255)

                                                                          ggTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCaa                  >  1:2843117/1‑91 (MQ=255)

                                                                          ggTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCaa                  <  2:3137625/91‑1 (MQ=255)

                                                                            tgtACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCACCATCTGGATATTTAAGTTTTTCAAtt                <  2:3054338/91‑1 (MQ=255)

                                                                             gtACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAAttt               >  1:3612001/1‑91 (MQ=255)

                                                                              tACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAAtttt              <  1:2636355/91‑1 (MQ=255)

                                                                              tACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATATGGATATTTAAGTTTTTCAAtttt              <  2:2638525/91‑1 (MQ=255)

                                                                               acgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAAttttt             <  2:1277569‑M2/80‑1 (MQ=255)

                                                                               acgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAAttttt             >  2:467923‑M2/12‑91 (MQ=255)

                                                                                cgaggtctttAATTTATTTATTTTGATTTGATTTTAGGGATTTTAGATTTCCAGAAATCGTCATCTGGATATTTAAGTTTTTCAAtttttt            <  1:3461541‑M2/81‑1 (MQ=255)

                                                                                 gaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttg           <  2:2148717‑M2/82‑1 (MQ=255)

                                                                                  aggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttgt          <  2:1975465‑M2/83‑1 (MQ=255)

                                                                                  aggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttgt          <  2:1246925‑M2/83‑1 (MQ=255)

                                                                                  aggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttgt          >  2:2938312‑M2/9‑91 (MQ=255)

                                                                                     tctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGa       >  2:3370876‑M2/6‑91 (MQ=255)

                                                                                      ctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGaa      >  1:2298066‑M2/5‑91 (MQ=255)

                                                                                       tttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAAt     <  2:2579910‑M2/88‑1 (MQ=255)

                                                                                       tttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAAt     <  2:309283‑M2/88‑1 (MQ=255)

                                                                                          aaTTTATTTATTTTGATTTGTTTTTAGGCCTTTTAGATTTCCAGAGATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATgcc  >  2:3337566/1‑89 (MQ=255)

                                                                                          aaTTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGGc  <  1:3692027/91‑1 (MQ=255)

                                                                                          aaTTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGGc  <  1:329218/91‑1 (MQ=255)

                                                                                          aaTTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGGc  <  1:1709863/91‑1 (MQ=255)

GATGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGGC  >  USA300TCH1516_ALE/1005727‑1005907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.