BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1044649 =	217 (1.070)	23 (0.140)	12/132	NT	12.1%	coding (958/960 nt)	yfmC_1	Fe(3+)‑citrate‑binding protein YfmC
*	?	USA300TCH1516_ALE	1044700 =	156 (0.930)	23 (0.140)	12/132	NT	12.1%	coding (114/117 nt)	USA300HOU_RS05165	hypothetical protein

Only 100 of 310 total aligned reads displayed.

ATGGCAGAAGATTTAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGTTTTAACA  >  USA300TCH1516_ALE/1044610‑1044790

aTGGCAGAAGATTTAGAAAAAATTGCAGAAAAATCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGAGCTGTATTTTTaa                                                                                            >  2:734624/1‑91 (MQ=255)

 tGGCAGAAGATTTAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAAt                                                                                           >  2:940228/1‑91 (MQ=255)

    cAGAAGATTTAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATAGAAGAGTGGCGATGTATTTTTAATTAt                                                                                        >  2:3419288/1‑91 (MQ=255)

    aaaaagaTTTAGAAAAAATTGCATGAAAAGCAAAATAAAAATACAGCGCTGCTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTAt                                                                                        <  2:3676214/88‑1 (MQ=39)

     agaagaTTTAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATg                                                                                       <  1:3191628/91‑1 (MQ=255)

      gaagaTTTAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGt                                                                                      <  1:2287469/91‑1 (MQ=255)

        agaTTTAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGttt                                                                                    >  1:3841984/1‑91 (MQ=255)

        agaATTAGAAAAAATTGCAAAAAAAGCAAAATAAAAATACAGCGCGTCTCGTAAATCATATAAGGGTGGCGCTGTATTTTTAATTATGttt                                                                                    <  2:142461/91‑1 (MQ=38)

         gaTTTAGAAAAAATTGCGGAAAAAGCAAAATGAAAATAGAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTtta                                                                                   <  2:3524872/91‑1 (MQ=255)

            ttAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTGAATTATGAttatta                                                                                >  2:2739191/1‑91 (MQ=255)

             tAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTtattat                                                                               >  1:1054097/1‑91 (MQ=255)

             tAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTtattat                                                                               <  1:734823/91‑1 (MQ=255)

             tAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTtattat                                                                               >  2:1040178/1‑91 (MQ=255)

             tAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTtattat                                                                               >  2:2039221/1‑91 (MQ=255)

             tAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTtattat                                                                               <  2:3223768/91‑1 (MQ=255)

                aaaaaaTTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTg                                                                            >  1:1734019/1‑91 (MQ=255)

                aaaaaaTTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTg                                                                            >  1:1620056/1‑91 (MQ=255)

                 aaaaaTTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGt                                                                           <  2:2066743/91‑1 (MQ=255)

                 aaaaaTTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGt                                                                           <  1:698286/91‑1 (MQ=255)

                   aaaTTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCg                                                                         <  1:890117/91‑1 (MQ=255)

                   aaaTTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCg                                                                         <  2:525847/91‑1 (MQ=255)

                     aTTGCAGAAAAAGCAAAATAAAAATACATCGTTACTCTTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGa                                                                       <  2:1099159/91‑1 (MQ=255)

                     aTTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGa                                                                       <  1:1011184/91‑1 (MQ=255)

                      ttGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAt                                                                      >  1:2920323/1‑91 (MQ=255)

                       tGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAtg                                                                     >  1:2074797/1‑91 (MQ=255)

                       tGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAtg                                                                     >  1:1835139/1‑91 (MQ=255)

                       tGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAtg                                                                     >  2:3799890/1‑91 (MQ=255)

                       tGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAtg                                                                     >  1:413590/1‑91 (MQ=255)

                       tGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAtg                                                                     <  2:1617745/91‑1 (MQ=255)

                        gCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAtgt                                                                    >  1:1727769/1‑91 (MQ=255)

                         cAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGAtgtg                                                                   <  2:1742553/91‑1 (MQ=255)

                           gAAAAAGCAAAATAAAAGTACAGCGCTACTCGTAAATCATATAAGAGGGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGtgat                                                                 <  1:1698031/91‑1 (MQ=255)

                             aaaaGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGtgatga                                                               >  1:3285836/1‑91 (MQ=255)

                             aaaaGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTAGCTGTCGGATGtgatga                                                               <  2:1812730/91‑1 (MQ=255)

                                   aaaataaaaataCAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTAcc                                                         >  1:122474/1‑91 (MQ=255)

                                   aaaataaaaataCAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTAcc                                                         >  2:129864/1‑91 (MQ=255)

                                    aaataaaaataCAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCt                                                        >  2:857799/1‑91 (MQ=255)

                                     aataaaaataCAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTg                                                       <  2:666786/91‑1 (MQ=255)

                                      ataaaaataCAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGa                                                      <  1:865996/91‑1 (MQ=255)

                                       TAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaa                                                     >  1:2362306‑M1/1‑91 (MQ=255)

                                       TAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaa                                                     >  1:3632796‑M1/1‑91 (MQ=255)

                                       TAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaa                                                     >  1:2324571‑M1/1‑91 (MQ=255)

                                       TAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaa                                                     >  2:868162‑M1/1‑91 (MQ=255)

                                       TAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaa                                                     <  2:2081869‑M1/91‑1 (MQ=255)

                                       TAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaa                                                     >  2:579470‑M1/1‑91 (MQ=255)

                                       TAAAAATACAGCGCTACACGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaa                                                     >  2:2924129‑M1/1‑91 (MQ=255)

                                        AAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaaa                                                    <  1:3905037‑M1/91‑1 (MQ=255)

                                        AAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGaaa                                                    >  2:3581245‑M1/1‑91 (MQ=255)

                                          AAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGt                                                  >  1:2592016‑M1/1‑91 (MQ=255)

                                             TACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTa                                               <  1:1856505‑M1/91‑1 (MQ=255)

                                              ACAGCGCCACTCTTATATGATTTACGAGTAGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTAt                                              <  2:3293274‑M1/91‑1 (MQ=255)

                                               CAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTAtt                                             <  2:432082‑M1/91‑1 (MQ=255)

                                                AGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTAttt                                            <  2:2385788‑M1/91‑1 (MQ=255)

                                                 gcgccactcttatatgatttacgagtagcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTc                                           >  1:496890‑M2/42‑91 (MQ=255)

                                                 gcgccactcttatatgatttacgagtagcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTc                                           >  2:3774889‑M2/42‑91 (MQ=255)

                                                 GCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTc                                           <  1:3373278‑M1/91‑1 (MQ=255)

                                                  CGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCg                                          <  1:1182247‑M1/91‑1 (MQ=255)

                                                   gccactcttatatgatttacgagtagcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGa                                         >  1:3275616‑M2/40‑91 (MQ=255)

                                                   gccactcttatatgatttacgagtagcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGa                                         >  1:2757590‑M2/40‑91 (MQ=255)

                                                   gccactcttatatgatttacgagtagcgctgtatttttaATCATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGa                                         >  2:1706414‑M2/40‑91 (MQ=255)

                                                   GCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGa                                         <  2:1930371‑M1/91‑1 (MQ=255)

                                                    CTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGTATGTGATGATTTACCTGAAAGTTTATTTCGaa                                        >  2:3884653‑M1/1‑91 (MQ=255)

                                                    CTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGaa                                        >  2:3074002‑M1/1‑91 (MQ=255)

                                                     tACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAAt                                       <  1:624167/91‑1 (MQ=255)

                                                         cttatatgatttacgagtagcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAAt                                   >  2:2642031‑M2/34‑91 (MQ=255)

                                                         cttatatgatttacgagtagcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAAt                                   >  1:953967‑M2/34‑91 (MQ=255)

                                                         cGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAAt                                   <  2:1677389/91‑1 (MQ=255)

                                                                cATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTa                            >  1:1593200/1‑91 (MQ=255)

                                                                 atatAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCTAATAAATTTTATTAc                           >  2:3131889/1‑91 (MQ=255)

                                                                 atatAAGAGGGGCGCTGTATTTTTAATTATGTTTATTATCTGTAGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTAc                           <  2:2577753/91‑1 (MQ=255)

                                                                  tatgagagTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACa                          <  2:2990955/87‑1 (MQ=255)

                                                                   ataAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACAt                         <  1:2215/91‑1 (MQ=255)

                                                                   ataAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACAt                         >  1:1938153/1‑91 (MQ=255)

                                                                   ataAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACAt                         <  2:1189703/91‑1 (MQ=255)

                                                                    taAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACaat                        <  1:3462113/91‑3 (MQ=255)

                                                                      agagTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAAc                      >  1:1529460/1‑91 (MQ=255)

                                                                       gagTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAAcc                     >  1:2958500/1‑91 (MQ=255)

                                                                       gagTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAAcc                     >  1:801107/1‑91 (MQ=255)

                                                                        agTGGCTCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCg                    <  2:1446708/91‑1 (MQ=255)

                                                                        agTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCg                    <  1:2518035/91‑1 (MQ=255)

                                                                        agTGGCGCTGTATTGTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCg                    >  2:3361839/1‑91 (MQ=255)

                                                                           ggCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACa                 <  2:1234489/91‑1 (MQ=255)

                                                                           ggCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACa                 <  2:2866239/91‑1 (MQ=255)

                                                                           ggCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACa                 >  2:692993/1‑91 (MQ=255)

                                                                           ggCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACa                 <  1:3124861/91‑1 (MQ=255)

                                                                           ggCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACa                 <  2:1480217/91‑1 (MQ=255)

                                                                            gcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACaa                <  2:1348386‑M2/77‑1 (MQ=255)

                                                                            gcgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACaa                >  1:2113571‑M2/15‑91 (MQ=255)

                                                                             cgctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAg               >  2:971232‑M2/14‑91 (MQ=255)

                                                                               ctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGa             <  2:1406142‑M2/80‑1 (MQ=255)

                                                                               ctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGa             <  1:1338565‑M2/80‑1 (MQ=255)

                                                                               ctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGa             <  2:1995505‑M2/80‑1 (MQ=255)

                                                                               ctgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGa             <  1:2616891‑M2/80‑1 (MQ=255)

                                                                                tgtatttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGAt            <  1:2896367‑M2/81‑1 (MQ=255)

                                                                                   atttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGt         >  2:2439488‑M2/8‑91 (MQ=255)

                                                                                   atttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGt         >  2:1292033‑M2/8‑91 (MQ=255)

                                                                                    tttttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGtt        <  1:2452204‑M2/85‑1 (MQ=255)

                                                                                      tttaATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGtttt      <  1:3062529‑M2/87‑1 (MQ=255)

                                                                                          aTTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGTTTTAACa  >  1:1437149/1‑91 (MQ=255)

                                                                                          aTTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGTTTTAACa  >  1:928679/1‑91 (MQ=255)

ATGGCAGAAGATTTAGAAAAAATTGCAGAAAAAGCAAAATAAAAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATTTACCTGAAAGTTTATTTCGAATAAATTTAATTACATAACCGACAAGGATTGTTTTAACA  >  USA300TCH1516_ALE/1044610‑1044790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.