BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1134014 =	170 (0.830)	9 (0.050)	6/132	NT	5.8%	intergenic (+8/+54)	coaD/USA300HOU_RS05620	Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase
*	?	USA300TCH1516_ALE	1134060 =	154 (0.920)	9 (0.050)	6/132	NT	5.8%	intergenic (+54/+8)	coaD/USA300HOU_RS05620	Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase

Only 100 of 264 total aligned reads displayed.

TTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTG  >  USA300TCH1516_ALE/1133970‑1134149

ctATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGttt                                                                                           <  1:2506911/90‑1 (MQ=255)

 tATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGtttt                                                                                          >  2:1495147/1‑91 (MQ=255)

  aTGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTc                                                                                         <  1:101169/91‑1 (MQ=255)

   tGTCGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCa                                                                                        <  1:3558267/91‑1 (MQ=255)

     ttGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAtt                                                                                      <  1:1785294/91‑1 (MQ=255)

      tGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAttt                                                                                     >  1:1786856/1‑91 (MQ=255)

       gAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTg                                                                                    >  2:2708543/1‑91 (MQ=255)

       gAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTCACAATCCTAAAATACTGTTTTCATTTg                                                                                    <  2:765266/91‑1 (MQ=255)

          aaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTa                                                                                 <  2:1070017/91‑1 (MQ=255)

           aGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTaa                                                                                <  1:2830425/91‑1 (MQ=255)

            ggCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAAc                                                                               <  2:3486237/91‑1 (MQ=255)

             gCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACg                                                                              >  1:1986189/1‑91 (MQ=255)

              cATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGa                                                                             >  1:2567183/1‑91 (MQ=255)

              cATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGa                                                                             >  1:1673934/1‑91 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                           <  2:3592176/91‑1 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                           >  2:2625169/1‑91 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                           >  2:1774033/1‑91 (MQ=255)

                ttGAAGAAGAAATTCAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCATAAGATACTGTTTTCATTTGTTAACGata                                                                           >  2:957634/1‑91 (MQ=255)

                 tGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGatat                                                                          >  1:2326341/1‑91 (MQ=255)

                 tGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGatat                                                                          >  2:1344486/1‑91 (MQ=255)

                  gaagaagaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATAtt                                                                         <  2:520967/91‑1 (MQ=255)

                     gaagaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCt                                                                      >  2:3143918/1‑91 (MQ=255)

                        gaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTa                                                                   >  2:321400/1‑91 (MQ=255)

                        gaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTa                                                                   >  2:1361949/1‑91 (MQ=255)

                          aaTTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATg                                                                 <  1:750589/91‑1 (MQ=255)

                             ttAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACa                                                              <  2:3271744/91‑1 (MQ=255)

                             ttAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACa                                                              <  2:2348005/91‑1 (MQ=255)

                             ttAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACa                                                              >  2:2500029/1‑91 (MQ=255)

                              tAAGTGATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAg                                                             <  2:3207566/91‑1 (MQ=255)

                              tAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAg                                                             >  1:3764249/1‑91 (MQ=255)

                               aaGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAgg                                                            >  2:2269084/1‑91 (MQ=255)

                                aGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGc                                                           >  1:2631076/1‑91 (MQ=255)

                                 gTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCg                                                          <  2:3855581/91‑1 (MQ=255)

                                   aataaAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTTTTAACGATATTGCTGTATGACAGGCgtg                                                        >  2:607811/1‑91 (MQ=255)

                                    ataaAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATAATGTTTTCATTTGTTAACGATATTGCTGTATTACAGGCgtgt                                                       <  2:392940/91‑1 (MQ=255)

                                     taaAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGtt                                                      >  2:3766693/1‑91 (MQ=255)

                                     taaAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGtt                                                      >  1:5079/1‑91 (MQ=255)

                                      aaaaaTAACAGTATTTTAGGTTTATCATGGTTTACAAACCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTg                                                     >  1:3329931/1‑91 (MQ=255)

                                       aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa                                                    <  1:1334221/91‑1 (MQ=255)

                                       aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa                                                    >  2:3374038/1‑91 (MQ=255)

                                       aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa                                                    >  2:1311874/1‑91 (MQ=255)

                                       aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa                                                    <  1:1220751/91‑1 (MQ=255)

                                       aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa                                                    <  1:1524949/91‑1 (MQ=255)

                                        aaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaa                                                   >  2:1156420/1‑91 (MQ=255)

                                        aaaTAACAGTATTTTAGGTCTATCATGGTTTACAATACTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACTGGAGTGTTgca                                                   >  2:3656794/1‑89 (MQ=255)

                                         aaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaaa                                                  <  1:3225920/91‑1 (MQ=255)

                                         aaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaaa                                                  <  1:3226092/91‑1 (MQ=255)

                                         aaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGGATGACAGGCGTGTTGaaa                                                  <  1:3096504/91‑1 (MQ=255)

                                          aTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAAt                                                 <  1:1255104/91‑1 (MQ=255)

                                          aTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAAt                                                 <  1:1385153/91‑1 (MQ=255)

                                             ACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtg                                              <  1:1031714‑M1/91‑1 (MQ=255)

                                             ACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtg                                              >  1:268697‑M1/1‑91 (MQ=255)

                                               AGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtt                                            >  1:1516943‑M1/1‑91 (MQ=255)

                                                gtattttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgttt                                           >  2:3312199‑M2/43‑91 (MQ=255)

                                                 TATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttg                                          <  2:3708830‑M1/91‑1 (MQ=255)

                                                 TATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttg                                          >  2:2945253‑M1/1‑91 (MQ=255)

                                                   ttttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                        >  1:587604‑M2/40‑91 (MQ=255)

                                                   ttttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                        >  2:3452031‑M2/40‑91 (MQ=255)

                                                   ttttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                        >  2:2048422‑M2/40‑91 (MQ=255)

                                                   TTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                        <  1:3924086‑M1/91‑1 (MQ=255)

                                                    TTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTttgttg                                       >  2:1251979‑M1/1‑91 (MQ=255)

                                                     TTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTttgttgt                                      >  2:704078‑M1/1‑91 (MQ=255)

                                                      TAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTttgttgtt                                     <  2:1860543‑M1/91‑1 (MQ=255)

                                                      TAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTttgttgtt                                     <  1:1468830‑M1/91‑1 (MQ=255)

                                                      TAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTttgttgtt                                     >  1:3283838‑M1/1‑91 (MQ=255)

                                                       aggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTttgttgttg                                    >  1:1814385‑M2/36‑91 (MQ=255)

                                                        ggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGc                                   >  2:2537140‑M2/35‑91 (MQ=255)

                                                        GGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGc                                   >  2:270575‑M1/1‑91 (MQ=255)

                                                        GGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGc                                   <  1:220431‑M1/91‑1 (MQ=255)

                                                              tCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCtt                             >  1:169724/1‑91 (MQ=255)

                                                                aTGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTAt                           <  1:1172803/91‑1 (MQ=255)

                                                                  ggTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTg                         >  2:1020955/1‑91 (MQ=255)

                                                                  ggTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTg                         >  2:1047826/1‑91 (MQ=255)

                                                                   gTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGc                        >  1:2036137/1‑91 (MQ=255)

                                                                   gTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGc                        >  2:198502/1‑91 (MQ=255)

                                                                   gTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTCGTTGCCCGCTTATTGc                        >  2:3778050/1‑91 (MQ=255)

                                                                     ttACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCAt                      <  2:888684/91‑1 (MQ=255)

                                                                     ttACAATCCTAAAATACTGTGTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCAt                      <  2:3953477/91‑1 (MQ=255)

                                                                       aCAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTg                    >  1:3879591/1‑91 (MQ=255)

                                                                       aCAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTg                    >  2:2294966/1‑91 (MQ=255)

                                                                       aCAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTg                    <  1:560862/91‑1 (MQ=255)

                                                                         aaTCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGta                  <  2:672800/91‑1 (MQ=255)

                                                                         aaTCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGta                  <  2:2676296/91‑1 (MQ=255)

                                                                         aaTCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGta                  >  2:939382/1‑91 (MQ=255)

                                                                            cctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTatat               >  2:2892126‑M2/15‑91 (MQ=255)

                                                                             ctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtg              >  2:1731597‑M2/14‑91 (MQ=255)

                                                                               aaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtg            <  2:1644915‑M2/80‑1 (MQ=255)

                                                                                 aatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtgtg          <  2:787045‑M2/82‑1 (MQ=255)

                                                                                 aatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtgtg          <  1:2879549‑M2/82‑1 (MQ=255)

                                                                                  atactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATgtgtgt         >  1:3960698‑M2/9‑91 (MQ=255)

                                                                                  atactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATgtgtgt         <  1:289653‑M2/83‑1 (MQ=255)

                                                                                    actgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTg       <  2:894514‑M2/85‑1 (MQ=255)

                                                                                    actgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTg       >  1:67794‑M2/7‑91 (MQ=255)

                                                                                    actgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTg       <  2:1528818‑M2/85‑1 (MQ=255)

                                                                                    actgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCACTTATTGCATTGTATATGTGTGTTg       >  1:3676900‑M2/7‑91 (MQ=255)

                                                                                      tgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCt     <  1:302657‑M2/87‑1 (MQ=255)

                                                                                       gttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCtt    <  1:926721‑M2/88‑1 (MQ=255)

                                                                                       gttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCtt    >  1:2274620‑M2/4‑91 (MQ=255)

                                                                                       gttTTCATTTGTTAACGATATTGATGTATGACATGCGAGTTGAAATATGTTTGTTGTTGGCCGCTTATTGCATTGTATATGTGTGTTGCtt    >  1:3155975‑M2/4‑91 (MQ=255)

                                                                                        ttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCttt   <  1:1566101‑M2/89‑1 (MQ=255)

TTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTG  >  USA300TCH1516_ALE/1133970‑1134149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.