| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2537754 = | 71 (0.790) | 5 (0.060) | 5/250 | 13.5 | 6.9% | intergenic (+108/+46) | USA300TCH1516_02423/gpmA_2 | hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase |
| ? | USA300TCH1516_ALE | 2537797 = | 70 (0.850) | intergenic (+151/+3) | USA300TCH1516_02423/gpmA_2 | hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTGTCAGATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2537902‑2537754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAA > USA300TCH1516_ALE/2537797‑2537935 TGTGTCAGATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATG < 4:87636/141‑1 TGTCAGATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCA < 2:691939/141‑1 TGTCAGATGAAAATATCATTAATTATGAAATTAAAAAAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAAATAAATAATACTTAGAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCA < 2:424804/141‑1 TCAGATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGC > 1:140106/1‑141 TCAGATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGC < 2:185827/141‑1 CAGATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCT < 2:297516/141‑1 GATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGATCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCT > 3:77716/1‑141 GATTTAGAAGTTATAGATAAATACTACTTATAAAAACAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTG > 2:74064/1‑141 ATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATA > 1:39360/1‑141 AAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTT > 3:192693/1‑141 GCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTACACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGA > 4:64472/1‑141 TGTACACAAGGAGCGAGTGTATATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATC > 2:249375/1‑141 aaGCAGCTCTTTTTTTATAAGTAATATTTATCTATAACTTCTAAATCATCCTTTAATTTATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATTATATCTTCATCTGACACATCTTCAAGATATTTAATCAATTCG > 4:21263/3‑141 ATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCG < 1:273161/141‑1 ATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCG > 1:25517/1‑141 TGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGC > 2:579560/1‑141 CTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATT < 1:194047/141‑1 TCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTG < 1:301890/141‑1 TTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAA < 1:199206/141‑1 TGTGTCAGATGAAGATATCATTAATTATGAAATTAAAACAGGTGCACCGCTTGTTTATGAATTAACGGATGATTTAGAAGTTATAGATAAATACTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2537902‑2537754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAA > USA300TCH1516_ALE/2537797‑2537935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |