New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2537754 =	71 (0.790)	5 (0.060)	5/250	13.5	6.9%	intergenic (+108/+46)	USA300TCH1516_02423/gpmA_2	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
	?	USA300TCH1516_ALE	2537797 =	70 (0.850)					intergenic (+151/+3)	USA300TCH1516_02423/gpmA_2	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATTATTAAGCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTC  >  USA300TCH1516_ALE/2537615‑2537892                                                                                                                                            |                                                                                                                                           aGATTATTAAGCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTaa                                                                                                                                           <  1:636829/141‑1 (MQ=255)      attaAGCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCt                                                                                                                                      >  2:194047/1‑141 (MQ=255)           gCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCata                                                                                                                                 <  2:290614/141‑1 (MQ=255)           gCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCata                                                                                                                                 >  2:134132/1‑141 (MQ=255)            cAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCatat                                                                                                                                >  2:301890/1‑141 (MQ=255)                aTAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATacac                                                                                                                            <  2:13905/141‑1 (MQ=255)                   aaaGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATAcactca                                                                                                                         <  2:42794/141‑1 (MQ=255)                   aaaGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATAcactca                                                                                                                         >  1:413039/1‑141 (MQ=255)                   aaaGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATAcactca                                                                                                                         >  2:577620/1‑141 (MQ=255)                     agagCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATAcactcact                                                                                                                       >  2:172460/1‑141 (MQ=255)                       agCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTcc                                                                                                                     <  4:5546/141‑1 (MQ=255)                        gCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCt                                                                                                                    <  2:365583/141‑1 (MQ=255)                         cGAAATAATTGTTTTAAGTTGACTATATTGTATGTCTAACTATGTTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCtt                                                                                                                   <  2:383718/141‑1 (MQ=255)                          gAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTtg                                                                                                                  >  2:410237/1‑141 (MQ=255)                           aaaTAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTtgt                                                                                                                 >  2:54186/1‑141 (MQ=255)                            aataatTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTtgtg                                                                                                                <  2:273492/141‑1 (MQ=255)                            aataatTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTACTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTtgtg                                                                                                                >  2:199206/1‑141 (MQ=255)                               aatTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTAc                                                                                                             <  1:134132/141‑1 (MQ=255)                                   gTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGc                                                                                                         <  2:226450/141‑1 (MQ=255)                                     tttAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAg                                                                                                       >  4:219509/1‑141 (MQ=255)                                     tttAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAg                                                                                                       <  1:387657/141‑1 (MQ=255)                                      ttAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGc                                                                                                      >  2:52864/1‑141 (MQ=255)                                          tttGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCCGCTCtt                                                                                                  >  3:216525/1‑141 (MQ=255)                                            tGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCtttt                                                                                                <  1:461895/141‑1 (MQ=255)                                             gACTATATTGTATGTCTAACTATATTGTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCttttt                                                                                               >  1:343504/1‑141 (MQ=255)                                             gACTATATTGTATGTCTAAAAATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCttttt                                                                                               >  1:343380/1‑141 (MQ=255)                                              aCTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCtttttt                                                                                              <  4:189813/141‑1 (MQ=255)                                                     tGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTCCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagt                                                                                       <  1:651155/141‑1 (MQ=255)                                                       tATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagtag                                                                                     <  1:452825/141‑1 (MQ=255)                                                         tGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAgtagta                                                                                   >  1:106630/1‑141 (MQ=255)                                                         tGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAgtagta                                                                                   >  1:689388/1‑141 (MQ=255)                                                               aCTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATc                                                                             >  2:664203/1‑141 (MQ=255)                                                                cTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCt                                                                            <  2:83059/141‑1 (MQ=255)                                                                     ttttCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATTCAGCTCTTTTTTTATAAGTAGTATTTATCTATAAc                                                                       >  2:127195/1‑141 (MQ=255)                                                                        tCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTc                                                                    >  1:488452/1‑141 (MQ=255)                                                                        tCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTc                                                                    <  3:33213/141‑1 (MQ=255)                                                                        tCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTCTACATGCAGCCCTTTTTTTATACGTAGTATTTACCTATAACTTc                                                                    >  2:535888/1‑141 (MQ=255)                                                                            gTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTaaa                                                                <  1:625420/141‑1 (MQ=255)                                                                              aTCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCACTTTTTTTATAAGTAGTATTTATATATAAATTCTAAatc                                                              >  1:78338/1‑141 (MQ=255)                                                                               tCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAatca                                                             <  2:440489/141‑1 (MQ=255)                                                                                   tAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCg                                                         <  1:556411/141‑1 (MQ=255)                                                                                     gCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGtt                                                       <  2:46588/141‑1 (MQ=255)                                                                                      cTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTa                                                      <  4:100868/141‑1 (MQ=255)                                                                                        cGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATTTACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAAt                                                    >  2:701216/1‑141 (MQ=255)                                                                                        cGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAAt                                                    >  4:244442/1‑141 (MQ=255)                                                                                          ttAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTc                                                  <  4:12009/141‑1 (MQ=255)                                                                                             atatAAACTCTATACTTAACTATTTCCTTACATTACTTCCCATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATa                                               >  3:184655/1‑141 (MQ=255)                                                                                             atatAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATa                                               <  4:121520/141‑1 (MQ=255)                                                                                              tataAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATaa                                              <  2:275320/141‑1 (MQ=255)                                                                                               ataAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATaaa                                             >  2:425958/1‑141 (MQ=255)                                                                                                taAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTATTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAAc                                            >  1:386136/1‑141 (MQ=255)                                                                                                  aaCTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACaa                                          <  2:615411/141‑1 (MQ=255)                                                                                                           cTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCAc                                 >  1:256105/1‑141 (MQ=255)                                                                                                             tAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCt                               >  1:387756/1‑141 (MQ=255)                                                                                                                 tATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGttt                           <  1:263233/141‑1 (MQ=255)                                                                                                                    ttCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGTAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTaa                        <  2:134862/141‑1 (MQ=255)                                                                                                                     tCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAAt                       >  1:249156/1‑141 (MQ=255)                                                                                                                        ttACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTc                    <  2:283744/141‑1 (MQ=255)                                                                                                                        ttACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTc                    <  2:106630/141‑1 (MQ=255)                                                                                                                        ttACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTc                    <  2:233350/141‑1 (MQ=255)                                                                                                                        ttACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTc                    <  2:427112/141‑1 (MQ=255)                                                                                                                            aTTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTtaataa                >  4:303929/1‑141 (MQ=255)                                                                                                                             ttACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAtaat               >  2:702219/1‑141 (MQ=255)                                                                                                                               aCTTCACATATTTAAGAGCTGAATATAAACTCACTCCCTGTGTACATGCAGCTATTTTTTTCTAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGAACCTGTTTTAATTAAAtaatta             >  2:243422/1‑141 (MQ=255)                                                                                                                                     caTATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGtt                            >  2:405379/1‑120 (MQ=255)                                                                                                                                     caTATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGtt                            <  1:405379/120‑1 (MQ=255)                                                                                                                                     caTATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGata       >  2:273161/1‑141 (MQ=255)                                                                                                                                      atatTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGatat      >  3:239658/1‑141 (MQ=255)                                                                                                                                          ttAAGAGCTGCATTTACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTc  <  1:701216/141‑1 (MQ=255)                                                                                                                                          ttAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTc  <  1:664203/141‑1 (MQ=255)                                                                                                                                          ttAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTc  >  1:579882/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                           AGATTATTAAGCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTC  >  USA300TCH1516_ALE/2537615‑2537892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.