mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 55.4% | 71.1 / 244.1 | 195 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 45.5% | 55.2 / 158.7 | 123 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 44.8% | 74.7 / 159.2 | 125 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,560 | 0 | T | C | 21.5% | 200.4 / 47.4 | 93 | R210R (CGT→CGC) | USA300HOU_RS00520 | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2431245 = | 103 (1.050) | 3 (0.030) | 3/276 | 11.6 | 3.2% | coding (285/693 nt) | birA_2 | Bifunctional ligase/repressor BirA |
| ? | USA300TCH1516_ALE | 2431338 = | 83 (0.910) | coding (378/693 nt) | birA_2 | Bifunctional ligase/repressor BirA | |||||