Predicted mutation
evidence seq id position mutation annotation gene description
MC JC USA300TCH1516_ALE 819,056 Δ596 bp [USA300HOU_RS04010] [USA300HOU_RS04010]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 819056 819651 596 132 [0] [0] 133 [USA300HOU_RS04010] [USA300HOU_RS04010]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 8190550 (0.000)132 (1.040) 87/276 0.3 100% coding (2/321 nt) USA300HOU_RS04010 hypothetical protein
?USA300TCH1516_ALE 819652 = 0 (0.000)intergenic (+278/‑147) USA300HOU_RS04010/garK_1 hypothetical protein/Glycerate 2‑kinase

Only 100 of 132 total aligned reads displayed.

AAAGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTGGCTATAAAGCTAAGTTCAATTGACCAATTTGAACAGGTTATTGAGGAAAATAAATATGTTTTTGTATTAAAACATAGTGAAACTTGTCCAATATCGGCAAATGCGTACGATCAATTTAATAAATTTTTATATGAACGC  >  USA300TCH1516_ALE/818916‑819194
                                                                                                                                           |                                                                                                                                           
aaaGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTa                                                                                                                                            >  1:349700‑M1/1‑140 (MQ=255)
aaaGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTa                                                                                                                                            >  2:269042‑M1/1‑140 (MQ=255)
 aaGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTag                                                                                                                                           >  1:202636‑M1/1‑139 (MQ=255)
  aGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagc                                                                                                                                          >  2:883612‑M1/1‑138 (MQ=255)
   gTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagca                                                                                                                                         <  1:235183‑M1/141‑5 (MQ=255)
      aaaaaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatat                                                                                                                                      >  3:135329‑M1/1‑134 (MQ=255)
        aaaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattg                                                                                                                                    <  3:107915‑M1/141‑10 (MQ=255)
        aaaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattg                                                                                                                                    <  1:463403‑M1/141‑10 (MQ=255)
         aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   <  4:402640‑M1/141‑11 (MQ=255)
         aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   <  2:757574‑M1/141‑11 (MQ=255)
         aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   <  3:271300‑M1/141‑11 (MQ=255)
         aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   >  3:334355‑M1/1‑131 (MQ=255)
         aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   <  1:873562‑M1/141‑11 (MQ=255)
            tttGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttat                                                                                                                                <  2:857425‑M1/141‑14 (MQ=255)
             ttGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatt                                                                                                                               >  3:122075‑M1/1‑127 (MQ=255)
             ttGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatt                                                                                                                               >  3:118999‑M1/1‑127 (MQ=255)
             ttGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatt                                                                                                                               >  3:293449‑M1/1‑127 (MQ=255)
                aaTTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttac                                                                                                                            <  1:767807‑M1/141‑18 (MQ=255)
                 aTTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttact                                                                                                                           <  4:88045‑M1/141‑19 (MQ=255)
                   ttATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactgg                                                                                                                         <  2:325209‑M1/141‑21 (MQ=255)
                   ttATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactgg                                                                                                                         <  3:256238‑M1/141‑21 (MQ=255)
                      tGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaat                                                                                                                      <  2:848010‑M1/141‑24 (MQ=255)
                              aTGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaata                                                                                                              <  2:943751‑M1/141‑32 (MQ=255)
                                 tCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatc                                                                                                           >  2:748882‑M1/1‑107 (MQ=255)
                                  cAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatca                                                                                                          >  2:739341‑M1/1‑106 (MQ=255)
                                    aCTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatg                                                                                                        <  2:87701‑M1/141‑38 (MQ=255)
                                     cTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgt                                                                                                       <  2:489093‑M1/141‑39 (MQ=255)
                                      ttACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtc                                                                                                      <  1:925453‑M1/141‑40 (MQ=255)
                                      ttACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtc                                                                                                      <  1:922184‑M1/141‑40 (MQ=255)
                                        aCTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcat                                                                                                    >  2:130492‑M1/1‑100 (MQ=255)
                                          tatttatattatgttaaaCATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgt                                                                                                  <  2:279903‑M1/135‑44 (MQ=255)
                                          tATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgt                                                                                                  <  1:961314‑M1/141‑44 (MQ=255)
                                           aTGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgtt                                                                                                 <  2:175812‑M1/141‑45 (MQ=255)
                                                 ataATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgt                                                                                           <  2:788294‑M1/141‑51 (MQ=255)
                                                 ataATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgt                                                                                           >  3:68913‑M1/1‑91 (MQ=255)
                                                 ataATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgt                                                                                           <  2:949792‑M1/141‑51 (MQ=255)
                                                   aaTGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttc                                                                                         >  2:520611‑M1/1‑89 (MQ=255)
                                                     tGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgc                                                                                       >  3:146670‑M1/1‑87 (MQ=255)
                                                      ggTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgca                                                                                      >  1:550047‑M1/1‑86 (MQ=255)
                                                      ggTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgca                                                                                      <  1:363572‑M1/141‑56 (MQ=255)
                                                      ggTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatgtactggaataattaataatcatgttatgttaaatgttcgca                                                                                      >  1:309057‑M1/1‑86 (MQ=255)
                                                       gTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcat                                                                                     >  1:19408‑M1/1‑85 (MQ=255)
                                                       gTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcat                                                                                     >  1:55724‑M1/1‑85 (MQ=255)
                                                        tAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatg                                                                                    <  2:819945‑M1/141‑58 (MQ=255)
                                                         aaaCATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatat                                                                                   >  3:350774‑M1/1‑83 (MQ=255)
                                                         aaaCATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatat                                                                                   >  3:50139‑M1/1‑83 (MQ=255)
                                                          aaCATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatata                                                                                  >  3:74423‑M1/1‑82 (MQ=255)
                                                              ttGATATTAACTATATGTATAAAAATGGCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatca                                                                              <  1:131441‑M1/141‑64 (MQ=255)
                                                                gATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacg                                                                            >  2:127553‑M1/1‑76 (MQ=255)
                                                                gATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacg                                                                            <  1:563666‑M1/141‑66 (MQ=255)
                                                                gATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacg                                                                            <  2:538335‑M1/141‑66 (MQ=255)
                                                                     tAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagata                                                                       <  1:878269‑M1/141‑71 (MQ=255)
                                                                     tAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagata                                                                       <  1:835082‑M1/141‑71 (MQ=255)
                                                                      aaCTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataa                                                                      >  2:408374‑M1/1‑70 (MQ=255)
                                                                       aCTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaa                                                                     >  1:221749‑M1/1‑69 (MQ=255)
                                                                           tatGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatct                                                                 <  4:146670‑M1/141‑77 (MQ=255)
                                                                           tatGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatct                                                                 <  1:674377‑M1/141‑77 (MQ=255)
                                                                            atGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatcta                                                                <  1:278588‑M1/141‑78 (MQ=255)
                                                                             tGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaa                                                               >  2:610543‑M1/1‑63 (MQ=255)
                                                                             tGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaa                                                               >  1:441796‑M1/1‑63 (MQ=255)
                                                                                 taAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggactaattaataatcatgtcatgttaaatgttcgcatatcatcacgagataaaatctaaaatt                                                           <  1:141116‑M1/141‑83 (MQ=255)
                                                                                  aaaaaTGTCGCGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaattt                                                          >  3:358880‑M1/1‑58 (MQ=255)
                                                                                   aaaaTGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcaggttaaatgttcgcatataatcacgagataaaatctaaaattta                                                         >  1:760903‑M1/1‑57 (MQ=255)
                                                                                     aaTGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaag                                                       <  1:168987‑M1/141‑87 (MQ=255)
                                                                                         tCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagatta                                                   >  1:363156‑M1/1‑51 (MQ=255)
                                                                                         tCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagatta                                                   >  2:624170‑M1/1‑51 (MQ=255)
                                                                                         tCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagatta                                                   <  2:92435‑M1/141‑91 (MQ=255)
                                                                                               aGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttt                                             <  2:576547‑M1/141‑97 (MQ=255)
                                                                                                  tGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttat                                          <  1:828201‑M1/141‑100 (MQ=255)
                                                                                                   gCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatg                                         <  1:898808‑M1/141‑101 (MQ=255)
                                                                                                    cTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatatagttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaatattaatcttttatga                                        >  4:15688‑M1/1‑40 (MQ=255)
                                                                                                     tATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaa                                       <  1:130492‑M1/141‑103 (MQ=255)
                                                                                                        ttAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataa                                    <  1:231516‑M1/141‑106 (MQ=255)
                                                                                                        ttAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataa                                    <  3:149253‑M1/141‑106 (MQ=255)
                                                                                                         tAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaa                                   <  1:474073‑M1/141‑107 (MQ=255)
                                                                                                           aaTGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaa                                 >  2:885055‑M1/1‑33 (MQ=255)
                                                                                                              gtgATAAATATTTTTATTGTTGTGTTGAGTagcagatggttatttactggaataattaataatcatgtcatgttaaatgttctcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacg                              >  4:90312‑M1/1‑30 (MQ=255)
                                                                                                               tgATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgt                             <  2:170982‑M1/141‑113 (MQ=255)
                                                                                                                gATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgta                            >  3:189827‑M1/1‑28 (MQ=255)
                                                                                                                gATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaacgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgta                            <  1:710040‑M1/141‑114 (MQ=255)
                                                                                                                 aaaaataTTGTTAGAGGTGAATAGAGTagcatattgttatttactgtaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtat                           <  2:821315‑M1/139‑115 (MQ=255)
                                                                                                                   aaaTATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatca                         >  3:115859‑M1/1‑25 (MQ=255)
                                                                                                                    aaTATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcac                        <  2:713272‑M1/141‑118 (MQ=255)
                                                                                                                    aaTATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcac                        >  2:429455‑M1/1‑24 (MQ=255)
                                                                                                                    aaTATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcac                        >  1:886607‑M1/1‑24 (MQ=255)
                                                                                                                      tatTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaa                      <  3:147518‑M1/141‑120 (MQ=255)
                                                                                                                      tatTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaa                      >  4:226394‑M1/1‑22 (MQ=255)
                                                                                                                        tttttAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaaca                    >  3:310562‑M1/1‑20 (MQ=255)
                                                                                                                        tttttAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaaca                    <  1:107748‑M1/141‑122 (MQ=255)
                                                                                                                        tttttAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgcatcacaaca                    <  1:849502‑M1/141‑122 (MQ=255)
                                                                                                                        tttttAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatctttaatgaataaaaaacgtatcacaaca                    <  4:182777‑M1/141‑122 (MQ=255)
                                                                                                                        gttttaGAGGTGAATAGAGGagcatattgttatttactggaataattaataattatgtcatgttaaatgttcgtatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaaca                    <  4:92329‑M1/140‑122 (MQ=255)
                                                                                                                          tttAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaa                  >  1:781680‑M1/1‑18 (MQ=255)
                                                                                                                            tAGAGGGGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttataaataaaaaacgtatcacaacaaata                >  2:153050‑M1/1‑16 (MQ=255)
                                                                                                                             agagGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaataa               <  3:354562‑M1/141‑127 (MQ=255)
                                                                                                                                 gTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaataataaa           >  1:784219‑M1/1‑11 (MQ=255)
                                                                                                                                   gAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaataataaagt         >  2:435283‑M1/1‑9 (MQ=255)
                                                                                                                                         agTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcacttataatcacgagataaaatctaaaatttaagattaatcttttatgcataaaaaacgtatcacaacaaataataaagtaaggtg   <  1:697950‑M1/141‑139 (MQ=255)
                                                                                                                                          gTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaataataaagtaaggtgg  >  1:259636‑M1/1‑2 (MQ=255)
                                                                                                                                          gTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaataataaagtaaggtgg  >  4:324330‑M1/1‑2 (MQ=255)
                                                                                                                                           |                                                                                                                                           
AAAGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTGGCTATAAAGCTAAGTTCAATTGACCAATTTGAACAGGTTATTGAGGAAAATAAATATGTTTTTGTATTAAAACATAGTGAAACTTGTCCAATATCGGCAAATGCGTACGATCAATTTAATAAATTTTTATATGAACGC  >  USA300TCH1516_ALE/818916‑819194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.