BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1562383	140 (1.320)	3 (0.030)	3/268	13.5	2.6%	intergenic (‑349/+41)	hlgC_1/lytN_2	Gamma‑hemolysin component C/putative cell wall hydrolase LytN
*	?	USA300TCH1516_ALE	= 1562397	90 (0.880)	3 (0.030)	3/268	13.5	2.6%	intergenic (‑363/+27)	hlgC_1/lytN_2	Gamma‑hemolysin component C/putative cell wall hydrolase LytN
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 140 total aligned reads displayed.

ATATAGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAA  >  USA300TCH1516_ALE/1562244‑1562523

atatAGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCaa                                                                                                                                             >  1:849095/1‑141 (MQ=255)

atatAGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATAATAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATATAAAACTTAACTGTTTATTAATTTTAAATAATAGGCaa                                                                                                                                             >  1:1137787/1‑141 (MQ=255)

  ataGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGt                                                                                                                                           <  1:1008456/141‑1 (MQ=255)

  ataGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGt                                                                                                                                           <  2:1016295/141‑1 (MQ=255)

    aGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATACTTTTATTACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTAc                                                                                                                                         <  1:1186219/141‑1 (MQ=255)

    aGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTAc                                                                                                                                         <  1:384780/141‑1 (MQ=255)

     gTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTAcc                                                                                                                                        >  1:372925/1‑141 (MQ=255)

       tGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATAGTCATGTAAAAATTAACTGTTTATTATTTTTAAATAATAGGAAAGTACCGa                                                                                                                                      <  1:881463/141‑1 (MQ=255)

       tGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATGTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGa                                                                                                                                      <  1:1077654/141‑1 (MQ=255)

        taCCATAACA‑ACTATTTAATCATTGCGCACAATATGAATACTAACTAATTCATATATTAAAAACGTTTGTTTTTTTAAAATGTAATATATTCACGTAAAAATTAACTGTTTATTAATTTTAAATAATATGCAAGTACCGaa                                                                                                                                     <  2:522493/140‑1 (MQ=255)

        gaacATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTCAAATAATAGGCAAGTACCGaa                                                                                                                                     <  2:674938/138‑1 (MQ=255)

        gACCATAACATGTTTTTTAATCAAATTGAACGAGACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGa                                                                                                                                      <  2:900896/141‑1 (MQ=255)

        gACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGaa                                                                                                                                     <  2:1126451/141‑1 (MQ=255)

        gACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGaa                                                                                                                                     <  2:1126374/141‑1 (MQ=255)

        gACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGaa                                                                                                                                     <  2:715049/141‑1 (MQ=255)

        aaCCATAACA‑ACTTATTAATCATAGCACACAATACGAACACAAAATATTTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGaa                                                                                                                                     <  2:615970/140‑1 (MQ=255)

         atcATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATATTAGGCAAGTACCGAAg                                                                                                                                    <  1:715265/139‑1 (MQ=255)

         aCCCTAACC‑ACTTTTTAATCAAAGCATACAATACGTACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  2:106331/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATCCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAGTAGGCAAGTACCGAAg                                                                                                                                    <  2:432971/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  2:675655/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  2:1018659/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  1:1092181/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  1:76376/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  2:595596/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  1:559359/141‑1 (MQ=255)

         aCCATAACA‑ACTTTTTAATCATAGCACACAATACGAACAAAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAg                                                                                                                                    <  2:565563/141‑1 (MQ=255)

            aTAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTCTAGAATAGGCAAGTACCGAAGTAc                                                                                                                                 <  1:1199604/141‑1 (MQ=255)

            aTAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTAc                                                                                                                                 >  1:201290/1‑141 (MQ=255)

             tAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTATTTTTAAATAATAGGCAAGTACCGAAGTAcc                                                                                                                                >  1:929279/1‑141 (MQ=255)

             tAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTAcc                                                                                                                                >  1:688795/1‑141 (MQ=255)

              aaca‑acTTTTTAATCTATGCACACAATACCAACCCAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCt                                                                                                                               <  1:1153447/141‑1 (MQ=255)

              aaca‑acTTTTTAATCATAGCATACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCt                                                                                                                               <  2:193318/141‑1 (MQ=255)

              aaca‑acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCt                                                                                                                               <  1:1033859/141‑1 (MQ=255)

               aca‑acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAACATTTAATATATTAATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAATACCGAAGTACCTg                                                                                                                              >  1:539781/1‑141 (MQ=255)

               aca‑acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTg                                                                                                                              >  2:747041/1‑141 (MQ=255)

                ca‑acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGc                                                                                                                             <  1:1053002/141‑1 (MQ=255)

                ca‑acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGc                                                                                                                             <  2:789895/141‑1 (MQ=255)

                ca‑acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTATTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGc                                                                                                                             <  1:813581/141‑1 (MQ=255)

                 a‑acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGcc                                                                                                                            >  1:469199/1‑141 (MQ=255)

                 a‑acTTATTAAGCATACCAAACAATACCAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATACTCATGTAAAAACTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGcc                                                                                                                            <  2:260536/141‑1 (MQ=255)

                   atttttttACCATACCACACAATACGAACACAAATTAATTTATATCCTAAACACGCTTGTTTTTTTAAAATTTAATATCTTCATGTAAAAATTAACTTTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                           <  2:275797/139‑1 (MQ=255)

                   acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                           <  2:1188430/141‑1 (MQ=255)

                   acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                           <  2:627464/141‑1 (MQ=255)

                   acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                           <  1:653266/141‑1 (MQ=255)

                    cTTTTTAATCATAGCACGCATTACGAACACAAAATAACTTATATACTAATAACTTTTGCTTTTTTAAAATTTAATATATTCATGTAAAAATTAATTGTTTATTAATTTTAAATAATAGGCAAGGATCGACGTACCTGCCTa                                                                                                                          <  2:128088/141‑1 (MQ=255)

                    cTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTa                                                                                                                          <  1:42751/141‑1 (MQ=255)

                     tttttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTaa                                                                                                                         <  1:529718/141‑1 (MQ=255)

                      ttttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGAACCTGCCTAAg                                                                                                                        >  1:924100/1‑141 (MQ=255)

                        ttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGATGTACCTGCGTTAGAt                                                                                                                      >  2:243875/1‑141 (MQ=255)

                            tCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATtcat                                                                                                                  <  2:189606/141‑1 (MQ=255)

                              aTAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTATTATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATATTAGGCAAGTGCCGAAGTAGTTGCTTAGGTTtcatct                                                                                                                >  2:989571/1‑140 (MQ=255)

                                agaacacaATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGGAGGTACCGAAGTACCTGCCTAAGATTCATCata                                                                                                              <  2:580029/138‑1 (MQ=255)

                                         tACTAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTAt                                                                                                     <  2:819130/141‑1 (MQ=255)

                                         tACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTAt                                                                                                     <  2:194029/141‑1 (MQ=255)

                                          acaaaCACAAAATAATTTATATACTACAATCGTTTGTTTGTTTCCCCTGTGGCATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATc                                                                                                    <  1:566879/138‑1 (MQ=255)

                                          acaaaCACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATc                                                                                                    <  2:715549/138‑1 (MQ=255)

                                          aCGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATc                                                                                                    <  2:695510/141‑1 (MQ=255)

                                           actacatAAAATAAAGCATCTTCTAAAAACCTTTGTTTTTTTAAAAATTAAATTATTCATAGAAAAATTAAATGTTAATTAATATTAAATAATAGTCAATTACCAAAAGACCTGCCTAAGATTCATCATATACAATTATCa                                                                                                   <  2:251378/138‑1 (MQ=255)

                                              acatAAAATAATTTATATACTAAAATCGTTTGTTTTTTTAAAATTTAATATACTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAAc                                                                                                <  1:1149651/141‑1 (MQ=255)

                                              acacAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCaaaa                                                                                                >  1:607442/1‑140 (MQ=255)

                                              acacAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTCAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAAc                                                                                                <  1:402741/141‑1 (MQ=255)

                                                    aataatTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCACACTGCACt                                                                                          >  1:304899/1‑141 (MQ=255)

                                                           tatataCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTGATGTAAAAATTAACGGTTTATTAATTTTAAATACTAGGCAAGAACAACAACACCAGCCTAAGTTTCATCATGTCCAATTATCAAACTGCACTAACCTTa                                                                                   >  2:124886/1‑141 (MQ=255)

                                                           tatataCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTa                                                                                   >  2:315088/1‑141 (MQ=255)

                                                           tatataCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTCCACTAAACTTa                                                                                   >  2:475220/1‑141 (MQ=255)

                                                                          tttgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                                                    <  2:207533/141‑1 (MQ=255)

                                                                           ttgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTc                                                                   >  1:907012/1‑141 (MQ=255)

                                                                            tgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCg                                                                  >  2:851475/1‑141 (MQ=255)

                                                                               ttttttAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAGATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGtt                                                               <  2:797913/141‑1 (MQ=255)

                                                                                tttttAAAATTTAATAAAGTCATGTAAAAATTTACTGTTTTGTAATTTTAAATACTAGGCCAGTACCGAAGGACCTGCCTATGAGTTATCGTATACTATCATCAAACTGCACTAAACTTACCAAAACGGCTTATTCTGTTg                                                              <  2:236552/141‑1 (MQ=25)

                                                                                          ttAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGt                                                    >  1:618220/1‑141 (MQ=255)

                                                                                           tAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGCTTGCCTGCTagacc                                                   >  2:1121357/1‑137 (MQ=255)

                                                                                            aaTATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCt                                                  <  1:457054/141‑1 (MQ=255)

                                                                                                tatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACct                                              >  1:1113227/1‑141 (MQ=255)

                                                                                                aatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACct                                              <  1:770528/140‑1 (MQ=255)

                                                                                                      aatAAAAATAAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCgg                                        <  1:1001205/139‑1 (MQ=255)

                                                                                                        tAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTc                                      >  2:184302/1‑141 (MQ=255)

                                                                                                            aaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAACCTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCaa                                  <  2:688795/141‑1 (MQ=255)

                                                                                                              ttAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAata                                >  2:1204694/1‑141 (MQ=255)

                                                                                                                 aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAATTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTACACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACTTCTCCGGTGGCAATATAg                             >  1:43533/1‑141 (MQ=255)

                                                                                                                 aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAg                             <  1:32320/141‑1 (MQ=255)

                                                                                                                  cTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGc                            <  1:184302/141‑1 (MQ=255)

                                                                                                                   tGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCg                           <  2:1090172/141‑1 (MQ=255)

                                                                                                                     tttATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGAc                         <  2:1089485/141‑1 (MQ=255)

                                                                                                                     tttATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGAc                         <  1:1101941/141‑1 (MQ=255)

                                                                                                                      ttactaATATTAAATAATAAGCAAGTACCGACGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACg                        <  1:3151/141‑1 (MQ=255)

                                                                                                                       tattaATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAATACTGCTTATTCGGTTGCCTGCTATGTCTACCCCCCCGTTTTCAATATAGCGACGt                       <  1:531852/141‑1 (MQ=38)

                                                                                                                          taATTATAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATTTCTACCTCTCCGGTCGCAATATAGCGACGTTGt                    <  2:125325/141‑1 (MQ=255)

                                                                                                                           aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTACAGTTATCGAAACTACTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTc                   >  1:877327/1‑141 (MQ=255)

                                                                                                                           aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTc                   <  1:59904/141‑1 (MQ=255)

                                                                                                                                tAAATAATAGGCCAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCACAACTGCTTCTTCGATTGCCTGCTATTTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTa              <  2:494930/141‑1 (MQ=37)

                                                                                                                                tAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGCCGTTGTCCACTa              <  1:622564/141‑1 (MQ=255)

                                                                                                                                   acaataGGCAAGTACCGAATTACCTGCATAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTACTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCTACGTTGTCCActacta           <  1:599663/139‑1 (MQ=25)

                                                                                                                                     aataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTCTGTCTACCTCTCCGGTCGCAATCTAGCCACGCTGTCCCCTATTCGc         >  2:460757/1‑141 (MQ=25)

                                                                                                                                      ataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTTGCAATATAGCGACGTTGTCCACTATTAGCa        >  2:1106295/1‑141 (MQ=255)

                                                                                                                                      ataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCAGTTGCCTGCTATGTCTACCTCTCCGGTAGCAATATAGCACCGTTGTACACCATTCGCa        >  2:418026/1‑141 (MQ=25)

                                                                                                                                      ataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTACTGATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTGGTCCACTCTTAGCa        >  2:1097964/1‑141 (MQ=255)

                                                                                                                                          gCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAatat    <  2:618220/141‑1 (MQ=255)

                                                                                                                                           cAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTCTCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAAtata   >  1:826056/1‑141 (MQ=255)

                                                                                                                                            aaGCACCGAAGCACCTCCCAAAGATTCATCATATACAATTAACAAACTGCACTAAACTTACCAAAACTGCTGATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAAGATAGCGACGTTGTCCACTATTAGCAATATaa  <  2:969006/141‑1 (MQ=21)

ATATAGTTGACCATAACA‑ACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAA  >  USA300TCH1516_ALE/1562244‑1562523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.