New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1562383140 (1.320)3 (0.030) 3/268 13.5 2.6% intergenic (‑349/+41) hlgC_1/lytN_2 Gamma‑hemolysin component C/putative cell wall hydrolase LytN
?USA300TCH1516_ALE = 1562397 90 (0.880)intergenic (‑363/+27) hlgC_1/lytN_2 Gamma‑hemolysin component C/putative cell wall hydrolase LytN
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 111 total aligned reads displayed.

TAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAGTAATCCATCTATA  >  USA300TCH1516_ALE/1562257‑1562537
                                                                                                                                            |                                                                                                                                            
tAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTATTTTTAAATAATAGGCAAGTACCGAAGTAcc                                                                                                                                              >  1:929279/1‑141 (MQ=255)
tAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATTATAGTCAAGTACCGAAGTAcc                                                                                                                                              <  1:616522/141‑1 (MQ=255)
tAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTAcc                                                                                                                                              >  1:688795/1‑141 (MQ=255)
 aacaacTTTTTAATCATAGCATACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCt                                                                                                                                             <  2:193318/141‑1 (MQ=255)
 aacaacTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCt                                                                                                                                             <  1:1033859/141‑1 (MQ=255)
  acaacTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAACATTTAATATATTAATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAATACCGAAGTACCTg                                                                                                                                            >  1:539781/1‑141 (MQ=255)
  acaacTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTg                                                                                                                                            >  2:747041/1‑141 (MQ=255)
   caacTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGc                                                                                                                                           <  1:1053002/141‑1 (MQ=255)
   caacTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTATTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGc                                                                                                                                           <  1:813581/141‑1 (MQ=255)
    aacTTTTTAATCATAGCACCAAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGcc                                                                                                                                          <  2:931931/141‑1 (MQ=255)
    aacTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGcc                                                                                                                                          >  1:469199/1‑141 (MQ=255)
    aacTTATTAAGCATACCAAACAATACCAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATACTCATGTAAAAACTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGcc                                                                                                                                          <  2:260536/141‑1 (MQ=255)
     atttttttACCATACCACACAATACGAACACAAATTAATTTATATCCTAAACACGCTTGTTTTTTTAAAATTTAATATCTTCATGTAAAAATTAACTTTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                                         <  2:275797/139‑1 (MQ=255)
     acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAATAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                                         <  1:435685/141‑1 (MQ=255)
     acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                                         <  2:1188430/141‑1 (MQ=255)
     acTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCt                                                                                                                                         <  2:627464/141‑1 (MQ=255)
      cTTTTTAATCATAGCACGCATTACGAACACAAAATAACTTATATACTAATAACTTTTGCTTTTTTAAAATTTAATATATTCATGTAAAAATTAATTGTTTATTAATTTTAAATAATAGGCAAGGATCGACGTACCTGCCTa                                                                                                                                        <  2:128088/141‑1 (MQ=255)
       tttttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTaa                                                                                                                                       <  1:529718/141‑1 (MQ=255)
       tttttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTaa                                                                                                                                       <  1:386641/141‑1 (MQ=255)
        ttttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAg                                                                                                                                      >  1:1150487/1‑141 (MQ=255)
        ttttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGAACCTGCCTAAg                                                                                                                                      >  1:924100/1‑141 (MQ=255)
          ttAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGATGTACCTGCGTTAGAt                                                                                                                                    >  2:243875/1‑141 (MQ=255)
           tAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGAtt                                                                                                                                   <  1:752007/141‑1 (MQ=255)
            aaTCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATtc                                                                                                                                  <  2:122848/141‑1 (MQ=255)
              tCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATtcat                                                                                                                                <  2:189606/141‑1 (MQ=255)
                aTAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTAACTGCCTAAGCTtcttca                                                                                                                              >  2:623182/1‑141 (MQ=255)
                  agaacacaATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGGAGGTACCGAAGTACCTGCCTAAGATTCATCata                                                                                                                            <  2:580029/138‑1 (MQ=255)
                           tACTAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTAt                                                                                                                   <  2:819130/141‑1 (MQ=255)
                           tACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTAt                                                                                                                   <  2:194029/141‑1 (MQ=255)
                            acaaaCACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATc                                                                                                                  <  2:715549/138‑1 (MQ=255)
                            aCGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATc                                                                                                                  <  2:695510/141‑1 (MQ=255)
                             actacatAAAATAAAGCATCTTCTAAAAACCTTTGTTTTTTTAAAAATTAAATTATTCATAGAAAAATTAAATGTTAATTAATATTAAATAATAGTCAATTACCAAAAGACCTGCCTAAGATTCATCATATACAATTATCa                                                                                                                 <  2:251378/138‑1 (MQ=255)
                                acatAAAATAATTTATATACTAAAATCGTTTGTTTTTTTAAAATTTAATATACTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAAc                                                                                                              <  1:1149651/141‑1 (MQ=255)
                                acacAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACCATTATCCAAc                                                                                                              <  2:312532/141‑1 (MQ=255)
                                acacAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCaaaa                                                                                                              >  1:607442/1‑140 (MQ=255)
                                acacAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTCAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAAc                                                                                                              <  1:402741/141‑1 (MQ=255)
                                      aataatTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCACACTGCACt                                                                                                        >  1:304899/1‑141 (MQ=255)
                                             tatataCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTa                                                                                                 >  2:315088/1‑141 (MQ=255)
                                             tatataCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTCCACTAAACTTa                                                                                                 >  2:475220/1‑141 (MQ=255)
                                              aataaCTAAAAACGTTTGTTCTTTTAAAATTTAATATATTCCTGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTAc                                                                                                <  2:804397/137‑1 (MQ=255)
                                                        aaCGTTTGTTTTTTTAAAATTTGAAAGATTGAGTTAATGATTAAGTGTGTATTAATTTTAAATAATAGGCAAGTAGCGAAGTACCTGCTTAAGATTCATCATATGCAGGTATCAAACTGCGCTAAACTTACCAAAACTGCt                                                                                      <  2:539447/141‑1 (MQ=255)
                                                            tttgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                                                                  <  2:207533/141‑1 (MQ=255)
                                                            tttgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                                                                  <  2:697138/141‑1 (MQ=255)
                                                             ttgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTc                                                                                 >  1:907012/1‑141 (MQ=255)
                                                              tgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCg                                                                                >  2:851475/1‑141 (MQ=255)
                                                                 ttttttAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAGATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGtt                                                                             <  2:797913/141‑1 (MQ=255)
                                                                  tttttAAAATTTAATAAAGTCATGTAAAAATTTACTGTTTTGTAATTTTAAATACTAGGCCAGTACCGAAGGACCTGCCTATGAGTTATCGTATACTATCATCAAACTGCACTAAACTTACCAAAACGGCTTATTCTGTTg                                                                            <  2:236552/141‑1 (MQ=25)
                                                                            ttAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGt                                                                  >  1:618220/1‑141 (MQ=255)
                                                                            ttAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAAGAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGt                                                                  <  2:250598/141‑1 (MQ=255)
                                                                             tAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGCTTGCCTGCTagacc                                                                 >  2:1121357/1‑137 (MQ=255)
                                                                              aaTATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCt                                                                <  1:457054/141‑1 (MQ=255)
                                                                                  tatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACct                                                            >  1:1113227/1‑141 (MQ=255)
                                                                                  aatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACct                                                            <  1:770528/140‑1 (MQ=255)
                                                                                        aatAAAAATAAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCgg                                                      <  1:1001205/139‑1 (MQ=255)
                                                                                          tAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTc                                                    >  2:184302/1‑141 (MQ=255)
                                                                                             aaaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCa                                                 >  2:190095/1‑141 (MQ=255)
                                                                                              aaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAACCTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCaa                                                <  2:688795/141‑1 (MQ=255)
                                                                                                ttAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAata                                              >  1:539942/1‑141 (MQ=255)
                                                                                                ttAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAata                                              >  2:1204694/1‑141 (MQ=255)
                                                                                                   aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAATTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTACACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACTTCTCCGGTGGCAATATAg                                           >  1:43533/1‑141 (MQ=255)
                                                                                                   aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAg                                           <  1:32320/141‑1 (MQ=255)
                                                                                                   aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAg                                           >  1:1089485/1‑141 (MQ=255)
                                                                                                   aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAg                                           >  2:14146/1‑141 (MQ=255)
                                                                                                    cTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGc                                          <  1:184302/141‑1 (MQ=255)
                                                                                                     tGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCg                                         <  2:1090172/141‑1 (MQ=255)
                                                                                                       tttATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGAc                                       <  1:1101941/141‑1 (MQ=255)
                                                                                                       tttATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGAc                                       <  2:1089485/141‑1 (MQ=255)
                                                                                                       tttATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGAc                                       <  1:525628/141‑1 (MQ=255)
                                                                                                        ttactaATATTAAATAATAAGCAAGTACCGACGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACg                                      <  1:3151/141‑1 (MQ=255)
                                                                                                         tattaATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAATACTGCTTATTCGGTTGCCTGCTATGTCTACCCCCCCGTTTTCAATATAGCGACGt                                     <  1:531852/141‑1 (MQ=38)
                                                                                                            taATTATAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATTTCTACCTCTCCGGTCGCAATATAGCGACGTTGt                                  <  2:125325/141‑1 (MQ=255)
                                                                                                             aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTACAGTTATCGAAACTACTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTc                                 >  1:877327/1‑141 (MQ=255)
                                                                                                             aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTc                                 <  1:14146/141‑1 (MQ=255)
                                                                                                             aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTc                                 <  1:59904/141‑1 (MQ=255)
                                                                                                             aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTc                                 >  1:651/1‑141 (MQ=255)
                                                                                                              aTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCTTCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTcc                                >  1:1137723/1‑141 (MQ=255)
                                                                                                                  tAAATAATAGGCCAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCACAACTGCTTCTTCGATTGCCTGCTATTTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTa                            <  2:494930/141‑1 (MQ=37)
                                                                                                                  tAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGCCGTTGTCCACTa                            <  1:622564/141‑1 (MQ=255)
                                                                                                                  aaaaTAATAGGCAAGCACCAAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCCCTa                            <  2:607442/140‑1 (MQ=255)
                                                                                                                    aataatAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTAtt                          <  2:77840/141‑1 (MQ=255)
                                                                                                                     acaataGGCAAGTACCGAATTACCTGCATAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTACTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCTACGTTGTCCActacta                         <  1:599663/139‑1 (MQ=25)
                                                                                                                       aataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTCTGTCTACCTCTCCGGTCGCAATCTAGCCACGCTGTCCCCTATTCGc                       >  2:460757/1‑141 (MQ=25)
                                                                                                                       aataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGc                       <  2:1113227/141‑1 (MQ=255)
                                                                                                                        ataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTTGCAATATAGCGACGTTGTCCACTATTAGCa                      >  2:1106295/1‑141 (MQ=255)
                                                                                                                        ataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCAGTTGCCTGCTATGTCTACCTCTCCGGTAGCAATATAGCACCGTTGTACACCATTCGCa                      >  2:418026/1‑141 (MQ=25)
                                                                                                                        ataGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTACTGATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTGGTCCACTCTTAGCa                      >  2:1097964/1‑141 (MQ=255)
                                                                                                                          aggacaGTACCGACGAACCGGCCTAAGATTCATCATATACAATTATCAAACTGCACTAACCTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATGTAGCGACGTTGTCAACTATTAGCaaa                    >  2:673119/6‑140 (MQ=21)
                                                                                                                           ggCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATGAAACTGCACTAAGCTTACCAAAACTGCTTATTCGTTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAata                   <  2:489738/141‑1 (MQ=255)
                                                                                                                           ggCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAata                   <  1:594897/141‑1 (MQ=255)
                                                                                                                             cAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTCTCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAAtata                 >  1:826056/1‑141 (MQ=255)
                                                                                                                              aaGCACCGAAGCACCTCCCAAAGATTCATCATATACAATTAACAAACTGCACTAAACTTACCAAAACTGCTGATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAAGATAGCGACGTTGTCCACTATTAGCAATATaa                <  2:969006/141‑1 (MQ=21)
                                                                                                                               aGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTACCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAg               <  2:907012/141‑1 (MQ=255)
                                                                                                                                  aCCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATCTAGCGACGTTGTCCACTATTAGCAATATAAGTaa            >  1:1015023/1‑141 (MQ=255)
                                                                                                                                  aCCGAAGTACCTGCCTAAGATTCATCACACACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAGTaa            >  1:1197613/1‑141 (MQ=255)
                                                                                                                                    cGAAGTACCTGCCTAAGATTCATCATATACACTTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCCCTATTAGCCATATAAGTAATc          <  1:623182/141‑1 (MQ=255)
                                                                                                                                    cGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAGTAATc          <  1:212147/141‑1 (MQ=255)
                                                                                                                                      aaGTACCTGCCTAAGATTCATCATATACAATTATCAATCTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAGTAATCCa        <  2:48628/141‑1 (MQ=255)
                                                                                                                                      aaGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAGTAATCCa        <  2:48431/141‑1 (MQ=255)
                                                                                                                                       aGTCCCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCACAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTACGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAATTAATCCAt       <  2:889733/141‑1 (MQ=255)
                                                                                                                                            cTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAGTAATCCATCtata  >  2:810444/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTCGCAATATAGCGACGTTGTCCACTATTAGCAATATAAGTAATCCATCTATA  >  USA300TCH1516_ALE/1562257‑1562537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.