New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2543221 =209 (1.230)4 (0.030) 4/270 13.3 2.1% intergenic (+15/‑552) hlgA/hlgC_2 Gamma‑hemolysin component A/Gamma‑hemolysin component C
?USA300TCH1516_ALE 2543266 = 187 (1.210)intergenic (+60/‑507) hlgA/hlgC_2 Gamma‑hemolysin component A/Gamma‑hemolysin component C
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 213 total aligned reads displayed.

TGCTTACGTGACAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACA  >  USA300TCH1516_ALE/2543074‑2543369
                                                                                                                                                   |                                                                                                                                                    
tGCTTACGTGACAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAACCCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCtt                                                                                                                                                     >  2:1498357/1‑149 (MQ=255)
tGCTTACGTGACAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCAAACCTAAGTAAACAGTTCAATCATCtt                                                                                                                                                     >  2:693930/1‑149 (MQ=255)
 gattACGAGAAAAGACATCGTTTAGCCGTTGATAGAAAACATAATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAATAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTa                                                                                                                                                    <  2:241759/147‑1 (MQ=255)
 gCTTACGTGACAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTa                                                                                                                                                    >  1:849586/1‑149 (MQ=255)
 gCTTACGTGACAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGAAAACAGTTCAATCATCTTa                                                                                                                                                    >  2:1553169/1‑149 (MQ=255)
       gTGACAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAAt                                                                                                                                              >  2:661828/1‑149 (MQ=255)
          aCAAGACACCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAATAGTTCAATCATCTTAAAAAATCCt                                                                                                                                           <  1:1021671/149‑1 (MQ=255)
           cAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTg                                                                                                                                          <  1:1450087/149‑1 (MQ=255)
                   cGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACtt                                                                                                                                  >  2:1176163/1‑149 (MQ=255)
                   cGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACtt                                                                                                                                  <  2:472475/149‑1 (MQ=255)
                   cGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACtt                                                                                                                                  <  2:32812/149‑1 (MQ=255)
                   cGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTAAAAAAAAAAAAAAAATCCTGGGACACtt                                                                                                                                  <  2:201791/149‑1 (MQ=255)
                   cGTTTAGCCGTGGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGGGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACtt                                                                                                                                  <  1:606492/149‑1 (MQ=255)
                     tttAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAACTATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACTCCTAAGTAAACAGTTCAACCAGCTTAAAAAATCCTGGGACACTTCa                                                                                                                                <  1:964059/149‑1 (MQ=255)
                     tttAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCa                                                                                                                                <  1:159049/149‑1 (MQ=255)
                            gTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATACTGGGACACTTCATACTTGt                                                                                                                         >  1:1074652/1‑149 (MQ=255)
                              tGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGtct                                                                                                                       <  1:931077/149‑1 (MQ=255)
                               gacaGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGtctc                                                                                                                      <  1:544243/146‑1 (MQ=255)
                                   aaaaaCATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGa                                                                                                                  <  1:146448/148‑1 (MQ=255)
                                     aaaCATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGAtt                                                                                                                <  2:1249648/149‑1 (MQ=255)
                                      aaCATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGAttt                                                                                                               <  2:1484823/149‑1 (MQ=255)
                                      aaCATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGAttt                                                                                                               >  1:1058029/1‑149 (MQ=255)
                                      aaCATGATGCTTTTAAAAACCCAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCAGCACACCTAAGTAAACAGTTCAATCATCTTAAAACATCCTGGGACACTTCGTACGTGTCTCAGGAttt                                                                                                               <  2:1425775/149‑1 (MQ=255)
                                        cATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGAttttt                                                                                                             <  1:1185205/149‑1 (MQ=255)
                                        aatgatgCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGAttttt                                                                                                             <  1:1524109/148‑1 (MQ=255)
                                          tgatgCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACTCCTTCACAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACGTGTCTCAGGATTTTTTa                                                                                                           <  2:1651336/149‑1 (MQ=255)
                                           gatgCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGCAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATAGTTGTCGCAGGATTTTTTaa                                                                                                          >  2:87391/1‑149 (MQ=255)
                                           gatgCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTaa                                                                                                          >  1:1109046/1‑149 (MQ=255)
                                           gatgCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTaa                                                                                                          <  2:90324/149‑1 (MQ=255)
                                                    aaaaaCCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGCATTTTTTAACAAATTGaa                                                                                                 <  1:1247570/149‑1 (MQ=255)
                                                     aaaaCCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCCTACTTGTCTCAGGATTTTTTAACAAAtgtaaa                                                                                                >  2:184294/1‑144 (MQ=255)
                                                        aCCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAg                                                                                             >  2:538723/1‑149 (MQ=255)
                                                        aCCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAg                                                                                             <  1:445039/149‑1 (MQ=255)
                                                         ccGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGc                                                                                            >  2:925285/1‑149 (MQ=255)
                                                         ccGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGc                                                                                            >  2:389539/1‑149 (MQ=255)
                                                          cGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGcc                                                                                           <  2:263606/149‑1 (MQ=255)
                                                          cGAAACGTTACAGGTAAATATGAAGTGAACTTGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGcc                                                                                           <  2:1341297/149‑1 (MQ=255)
                                                           gAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCt                                                                                          <  1:1638092/149‑1 (MQ=255)
                                                           gAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCt                                                                                          <  2:1144966/149‑1 (MQ=255)
                                                                attACAGTTAAATATGAAGTGAACTGGAAAACATATGAAGTAAAAATTAAAAGTATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATaa                                                                                     <  2:450303/148‑1 (MQ=255)
                                                                 ttACAGTTAAATATGAACTAAACTTGAAAACACGTTAAGTAAAAATTAAAAGCATCACACCTAATTAAACATTTCAATCATCTTAAAAAATCCTGGCACACTTCATACTTTTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAAc                                                                                    <  1:556928/149‑1 (MQ=255)
                                                                  tACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACa                                                                                   >  1:1231328/1‑149 (MQ=255)
                                                                    cAGTTAAATATGAAGTGAACTGGAAACCACAGGAAGGAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACAtt                                                                                 <  1:1511276/149‑1 (MQ=255)
                                                                            tatGAAACGAACTAGAAAAAACATGAAGGAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAattatt                                                                         <  1:358176/149‑1 (MQ=255)
                                                                             atGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTAttt                                                                        <  1:1418897/149‑1 (MQ=255)
                                                                              tGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTAtttt                                                                       >  1:1560754/1‑149 (MQ=255)
                                                                              tGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTAtttt                                                                       >  2:778104/1‑149 (MQ=255)
                                                                                aaatcatcTGGAAAACAGATGAAGTAAAAATTAAAAGCAGCACAACTTATTACACAGTTCAATCATCTTACAAAAGCCTGTGACACTTCATAATTTTCGCAGGATTTTTTAAGAAATTGAATCAGCCTTATAACATTAAATTATTTTAt                                                                     <  2:107402/142‑1 (MQ=255)
                                                                                aaGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTAt                                                                     >  2:835019/1‑149 (MQ=255)
                                                                                aaGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTAt                                                                     <  1:731440/149‑1 (MQ=255)
                                                                                aaGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCACCCTTATAACATTAAATTATTTTAt                                                                     >  2:1262693/1‑149 (MQ=255)
                                                                                aaGTGAACGGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTAt                                                                     <  1:30439/149‑1 (MQ=255)
                                                                                   tgaccgggAAAACACCTGAAGCAAAAGTTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGTCACTTCATACTTGGCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGt                                                                  <  1:591181/143‑1 (MQ=255)
                                                                                   tGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATTACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGt                                                                  <  2:499104/149‑1 (MQ=255)
                                                                                   tGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGt                                                                  <  2:1293054/149‑1 (MQ=255)
                                                                                    gAACTGGAAAACACACGAAGGAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTa                                                                 >  2:1009256/1‑149 (MQ=255)
                                                                                      aCTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACa                                                               <  1:1126428/149‑1 (MQ=255)
                                                                                      aCTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACa                                                               <  1:542633/149‑1 (MQ=255)
                                                                                            aaaCACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAAt                                                         >  2:971384/1‑149 (MQ=255)
                                                                                            aaaCACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAAt                                                         >  1:168444/1‑149 (MQ=255)
                                                                                            aaaCACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAAt                                                         >  1:499196/1‑149 (MQ=255)
                                                                                             accacaTGAAGCTAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAAtt                                                        <  1:1453070/147‑1 (MQ=255)
                                                                                             aaCACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACATATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAAtt                                                        <  2:849586/149‑1 (MQ=255)
                                                                                             aaCACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAAtt                                                        <  1:1340007/149‑1 (MQ=255)
                                                                                             aaCACATGAAGGAAAAATTAAGAGCATCACACCTACGTAAACAGTTTAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAAtt                                                        <  1:647371/149‑1 (MQ=255)
                                                                                             aaCACACGAACTAAAAACTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCCTGCTTGCCCCCTAGTAGTTTATCTTAGAAATTGAGCCTTATATCACTAAATTGTTTTATCGTACATTAAAtt                                                        <  1:1695938/149‑1 (MQ=255)
                                                                                               cacaTGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTta                                                      <  1:673820/149‑1 (MQ=255)
                                                                                               aacctgtaGTTAAAATTATAATCAGCACACCTAAGTAAATAGTTCAATCATCTTAAAATATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTACAACATTAAAATATTTTATCGTACATTAAATTta                                                      <  1:273045/142‑1 (MQ=255)
                                                                                                caaTGAAGTAAAAATTAAAAGCATCATACCTGAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACGCTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATTAGTCTTATATCATTAAATTATTTTATCGTACATTGCATTtaa                                                     <  2:1043956/147‑1 (MQ=255)
                                                                                                acaTGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTtaa                                                     <  1:1629451/149‑1 (MQ=255)
                                                                                                acaTGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTtaa                                                     <  2:1604666/149‑1 (MQ=255)
                                                                                                acaTGAAGCAAAAACTAAAAGCATCACACCTGAGTAAACAGTTCAATCCTCTTAAAAAATCCTGGGTCACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACCTTAAATTATTTTATCGTACATTAAATTtaa                                                     <  2:602632/149‑1 (MQ=255)
                                                                                                   tGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTtaataa                                                  >  1:381885/1‑149 (MQ=255)
                                                                                                   tGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTtaataa                                                  <  2:81784/149‑1 (MQ=255)
                                                                                                     aaGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTtaataata                                                >  2:400160/1‑149 (MQ=255)
                                                                                                            aaTTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTg                                         >  1:627153/1‑149 (MQ=255)
                                                                                                                  acgCATCACGCCTAACGAAACATTTTATTCAGCTCAAAAAATCCTGGGATACTTCATACTTTTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGAttttt                                   <  1:1206391/147‑1 (MQ=255)
                                                                                                                   aGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTta                                  >  1:1674446/1‑149 (MQ=255)
                                                                                                                   aGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTta                                  >  1:1316480/1‑149 (MQ=255)
                                                                                                                   aGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTta                                  <  2:1231328/149‑1 (MQ=255)
                                                                                                                    gCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTtat                                 <  1:854608/149‑1 (MQ=255)
                                                                                                                        cacaCCTAAGTAACCAGTACAATCAACCTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGa                             <  1:1219281/149‑1 (MQ=255)
                                                                                                                        cacaCCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACCCTTCATACGTGGCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGa                             >  1:758154/1‑149 (MQ=255)
                                                                                                                         acacCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGaa                            >  1:682146/1‑149 (MQ=255)
                                                                                                                         acacCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGACTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGaa                            >  1:318664/1‑149 (MQ=255)
                                                                                                                            ccTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATACCAACTGATTTTTATAAGAATaa                         >  1:1118354/1‑149 (MQ=255)
                                                                                                                                  tAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATc                   >  1:533547/1‑149 (MQ=255)
                                                                                                                                   aaaCAGTTCAATCATCTTAAACATTACCGAATCACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCg                  >  2:1223325/1‑149 (MQ=255)
                                                                                                                                   aaaCAGTTCAATCATCTTAAAAACTCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCg                  >  1:1269768/1‑149 (MQ=255)
                                                                                                                                   aaaCAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCg                  <  2:1316653/149‑1 (MQ=255)
                                                                                                                                   aaaCAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCg                  <  2:1674446/149‑1 (MQ=255)
                                                                                                                                    aaCAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACGGATTTTTATAAGAATAAGGTATCGa                 >  1:184481/1‑149 (MQ=255)
                                                                                                                                     aCAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGaa                >  1:24838/1‑149 (MQ=255)
                                                                                                                                      cAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAAc               <  2:1226999/149‑1 (MQ=255)
                                                                                                                                      cAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAAc               <  1:1372374/149‑1 (MQ=255)
                                                                                                                                       aGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAAcc              <  1:426936/149‑1 (MQ=255)
                                                                                                                                        gTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAACTTAGTCATAACAACTGATTTTTATAAGAATAAAGAATCGAACCa             >  2:177101/1‑149 (MQ=255)
                                                                                                                                              tcatcTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGCATAAAGTATCGAATCAtagtag       >  1:201062/1‑149 (MQ=255)
                                                                                                                                                atcTTAAAAAATCCTGGGACACTTCATACTTGTCTACAGATTATCTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGAt     <  1:1165415/149‑1 (MQ=255)
                                                                                                                                                 tcTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATGAAGTATCGAACCATAGTAGATa    <  1:925285/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TGCTTACGTGACAAGACATCGTTTAGCCGTTGATAGAAAACATGATGCTTTTAAAAACCGAAACGTTACAGTTAAATATGAAGTGAACTGGAAAACACATGAAGTAAAAATTAAAAGCATCACACCTAAGTAAACAGTTCAATCATCTTAAAAAATCCTGGGACACTTCATACTTGTCTCAGGATTTTTTAACAAATTGAATCAGCCTTATAACATTAAATTATTTTATCGTACATTAAATTTAATAATAACAACTGATTTTTATAAGAATAAAGTATCGAACCATAGTAGATACA  >  USA300TCH1516_ALE/2543074‑2543369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.