BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1195	7491 (0.630)	676 (0.060)	40/144	NT	8.4%	intergenic (‑1/‑384)	USA300HOU_RS15665/USA300HOU_RS14895	hypothetical protein/hypothetical protein
*	?	NC_012417	= 1199	8040 (0.750)	676 (0.060)	40/144	NT	8.4%	intergenic (‑5/‑380)	USA300HOU_RS15665/USA300HOU_RS14895	hypothetical protein/hypothetical protein

Only 100 of 3848 total aligned reads displayed.

TATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1097‑1195

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctatcattCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTT  <  NC_012417/1199‑1110

 ATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC                                                                                                   >  2:2106452/1‑91

 ATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC                                                                                                   >  1:870460/1‑91

 ATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC                                                                                                   >  2:2824101/1‑91

 ATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC                                                                                                   <  1:1928470/91‑1

 ATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC                                                                                                   <  2:2298264/91‑1

 ATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC                                                                                                   >  1:1550078/1‑91

 ATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACC                                                                                                   <  1:55649/91‑1

  TATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCT                                                                                                  <  2:499882/91‑1

  TATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCT                                                                                                  <  1:3526160/91‑1

  TATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCT                                                                                                  <  1:1787587/91‑1

  TATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCT                                                                                                  <  2:2355372/91‑1

  TATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCT                                                                                                  <  1:2331637/91‑1

  TATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCT                                                                                                  <  1:112644/91‑1

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 >  1:1064019/1‑91

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 >  1:2736024/1‑91

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 <  2:1636888/91‑1

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 >  1:310067/1‑91

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 <  2:257603/91‑1

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 >  2:126967/1‑91

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 <  1:2055189/91‑1

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 <  1:800641/91‑1

   ATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCCGGAATTTCTGGCTTTGCCAGACCTA                                                                                                 >  2:170364/1‑91

    TTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAGCCCCTGGAATTTCTGGCTTTGCCAGACCTAT                                                                                                <  1:1334983/91‑1

     TGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC                                                                                               >  2:2899918/1‑91

     TGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC                                                                                               <  2:295925/91‑1

     TGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC                                                                                               >  2:3474894/1‑91

     TGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC                                                                                               <  1:39541/91‑1

     TGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC                                                                                               >  2:1565519/1‑91

     TGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATC                                                                                               <  1:1001280/91‑1

      GTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA                                                                                              >  1:2684347/1‑91

      GTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA                                                                                              >  1:3377811/1‑91

      GTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCA                                                                                              >  1:995675/1‑91

       TGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCAT                                                                                             >  1:2005237/1‑91

         TCACAAAAATAAGACAGTACCGCTTTGTATGATATCACTTTAAAATACCTTACAACCCCTGGAATTTCTGTCTGTGCCAGACCTCTCcctc                                                                                           >  2:1140168/1‑87

         TCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTC                                                                                           <  1:1848152/91‑1

         TCACAAAAATAAGACAGTACAGCTTAGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTC                                                                                           <  1:3604306/91‑1

           ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAA                                                                                         <  1:467793/91‑1

           ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAA                                                                                         <  1:291705/91‑1

           ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAA                                                                                         <  2:2506008/91‑1

           ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAA                                                                                         <  1:2253481/91‑1

           ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAA                                                                                         <  2:2745478/91‑1

           ACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAA                                                                                         <  2:792570/91‑1

            CAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAA                                                                                        <  2:3621381/91‑1

            CAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAA                                                                                        <  2:931278/91‑1

             AAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAA                                                                                       <  2:2668987/91‑1

             AAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAA                                                                                       <  1:50419/91‑1

             AAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAA                                                                                       <  1:160385/91‑1

             AAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAA                                                                                       <  1:1469521/91‑1

             AAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACATATCATTCAAAA                                                                                       <  1:2976490/91‑1

              AAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAA                                                                                      <  1:2191696/91‑1

              AAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAA                                                                                      <  2:3341070/91‑1

              AAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAA                                                                                      <  1:2608204/91‑1

              AAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAA                                                                                      <  1:3180069/91‑1

              AAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAA                                                                                      <  2:1961770/91‑1

               AAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAAT                                                                                     <  1:1725572/91‑1

               AAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAAT                                                                                     <  1:368487/91‑1

               AAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAAT                                                                                     <  2:864926/91‑1

                AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGTCAGACCTATCATTCAAAAATG                                                                                    <  2:2035681/91‑1

                AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATG                                                                                    <  2:3134075/91‑1

                AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATG                                                                                    <  2:3759885/91‑1

                AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATG                                                                                    <  2:652222/91‑1

                AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATG                                                                                    <  1:377276/91‑1

                AATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATG                                                                                    <  1:953691/91‑1

                 ATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATGA                                                                                   <  1:2840695/91‑1

                 ATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATGA                                                                                   <  1:3838731/91‑1

                 ATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATGA                                                                                   <  1:2121220/91‑1

                 ATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATGA                                                                                   <  1:642645/91‑1

                  TAAGACAGAACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATGAT                                                                                  <  2:3087692/91‑1

                       CAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATGATAGGTC                                                                             <  1:72621/91‑1

                        AGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTCAAAAATGATAGGTCT                                                                            <  1:2551856/91‑1

                          TACAGCTTTTTATGATAGCACTTTAAGACACCTTAAGACCCCTGGAATTTGTGGCTTTGCCAGACCTATCATTCAAAAATGATAGGTCTGG                                                                          <  2:3193889/91‑1

                                                                                          CCTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTC          >  2:3825739/1‑91

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         <  2:2235661/91‑1

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         <  1:1278019/91‑1

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         <  2:2430843/91‑1

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         <  1:2776056/91‑1

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         <  2:3281264/91‑1

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         <  2:14114/91‑1

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         <  2:1792814/91‑1

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCT         >  1:167646/1‑91

                                                                                           CTATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGT           <  2:1494534/89‑1

                                                                                           CTATCATTCAAAAATGATAGGACTGGCAAAGCCAGAAATTCCAGGGGCTTTAAGGTATGTTAAAGTGATATCATACAAAGCTGTACTGTCT         >  1:1188893/1‑91

                                                                                            TATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTT        <  2:3025859/91‑1

                                                                                            TATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTT        <  2:3685943/91‑1

                                                                                             ATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTA       >  1:2417717/1‑91

                                                                                             ATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTA       >  2:721870/1‑91

                                                                                             ATCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTA       >  2:1330863/1‑91

                                                                                              TCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTAT      >  1:3029968/1‑91

                                                                                              TCATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTAT      <  1:1394453/91‑1

                                                                                               CATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATT     >  2:1873980/1‑91

                                                                                               CATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATT     <  2:567619/91‑1

                                                                                               CATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATT     >  1:3279934/1‑91

                                                                                                ATTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTT    <  2:1201761/91‑1

                                                                                                 TTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTT   <  2:354840/91‑1

                                                                                                 TTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTT   <  2:422218/91‑1

                                                                                                 TTCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTT   >  2:1057993/1‑91

                                                                                                  TCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTT  <  2:2180169/91‑1

                                                                                                  TCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTT  <  2:3387872/91‑1

                                                                                                  TCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTT  <  1:2492083/91‑1

                                                                                                  TCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTT  <  1:3452704/91‑1

TATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1097‑1195

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctatcattCAAAAATGATAGGTCTGGCAAAGCCAGAAATTCCAGGGGTTTTAAGGTATTTTAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTT  <  NC_012417/1199‑1110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.