| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 46314 | 204 (1.070) | 12 (0.060) | 9/156 | NT | 5.3% | coding (1207/1629 nt) | hin_1 | DNA‑invertase hin |
| ? | USA300TCH1516_ALE | = 46361 | 228 (1.230) | coding (1160/1629 nt) | hin_1 | DNA‑invertase hin | |||||
TGCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/46223‑46314‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATC < USA300TCH1516_ALE/46361‑46272 TGCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTT < 2:3846020/91‑1TGCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTT > 2:1475381/1‑91TGCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTT > 1:514570/1‑91 GCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG < 1:1449948/91‑1 GCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG < 1:1589781/91‑1 GCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG > 2:2653411/1‑91 GCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG > 1:3348342/1‑91 TCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTT < 2:766894/85‑1 TCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTT > 1:766894/1‑85 GATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAA < 1:1277315/91‑1 GTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCACGATATTGCTTATAAGCAACAACAATAT < 1:1656440/91‑1 GGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTA < 1:1750165/91‑1 GATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTAC < 1:42808/91‑1 GATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTAC < 1:42964/91‑1 ATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACA < 1:2220090/91‑1 ATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACA < 1:2020211/91‑1 ATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAAT < 1:687814/91‑1 GATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAAT < 2:2836728/91‑1 GATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAAT < 2:2839068/91‑1 ATGGTTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAATA < 1:13373/91‑1 TTTTAATCAAGTTATTTATTTTGATTTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAATAAATA < 1:380905/91‑1 GCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATC < 1:639933/91‑1 GCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATC > 1:302038/1‑91 TGCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/46223‑46314‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgCACTTCATCACGATATTGCTTATAAGCAACAACAATATGATGAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATC < USA300TCH1516_ALE/46361‑46272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |