BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 46314	204 (1.070)	12 (0.060)	9/156	NT	5.3%	coding (1207/1629 nt)	hin_1	DNA‑invertase hin
*	?	USA300TCH1516_ALE	= 46361	228 (1.230)	12 (0.060)	9/156	NT	5.3%	coding (1160/1629 nt)	hin_1	DNA‑invertase hin

Only 100 of 260 total aligned reads displayed.

GCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAC  >  USA300TCH1516_ALE/46224‑46404

gCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG                                                                                            >  1:3348342‑M1/1‑91 (MQ=255)

gCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG                                                                                            >  2:2653411‑M1/1‑91 (MQ=255)

gCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTG                                                                                            <  1:1589781‑M1/91‑1 (MQ=255)

 cTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGt                                                                                           <  1:1720471/91‑1 (MQ=255)

     tCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACtt                                                                                       >  1:2973103/1‑91 (MQ=255)

      cATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTtc                                                                                      >  2:2016537/1‑91 (MQ=255)

      cATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTtc                                                                                      <  1:2820858/91‑1 (MQ=255)

      cATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTtc                                                                                      >  2:1974937/1‑91 (MQ=255)

      cATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTtc                                                                                      <  2:2061367/91‑1 (MQ=255)

      cATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTtc                                                                                      >  2:2325707/1‑91 (MQ=255)

         atTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGAATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTtcatc                                                                                   >  1:3785219/1‑91 (MQ=255)

            tttGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCata                                                                                <  1:2669797/91‑1 (MQ=255)

              tGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAtt                                                                              <  2:2889462/91‑1 (MQ=255)

              tGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAtt                                                                              >  1:2085852/1‑91 (MQ=255)

               gAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttg                                                                             >  1:954614/1‑91 (MQ=255)

               gAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttg                                                                             <  2:1938454/91‑1 (MQ=255)

                 aTACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgtt                                                                           >  1:2677085/1‑91 (MQ=255)

                  tACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgttg                                                                          >  1:145027/1‑91 (MQ=255)

                    cTTTGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgttgtt                                                                        >  2:1842863/1‑91 (MQ=255)

                    cTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgttgtt                                                                        >  1:3537072/1‑91 (MQ=255)

                    cTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgttgtt                                                                        <  2:107175/91‑1 (MQ=255)

                     ttGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgttgttg                                                                       >  2:3316486/1‑91 (MQ=255)

                     ttGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgttgttg                                                                       <  2:3543362/91‑1 (MQ=255)

                     ttGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATAttgttgttg                                                                       <  2:2097608/91‑1 (MQ=255)

                          cTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTtat                                                                  <  1:3388618/91‑1 (MQ=255)

                           tGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTtata                                                                 <  1:2074032/91‑1 (MQ=255)

                           tGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTtata                                                                 <  1:651694/91‑1 (MQ=255)

                             aTTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAg                                                               <  2:1276980/91‑1 (MQ=255)

                              ttACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGc                                                              <  1:2384141/91‑1 (MQ=255)

                              ttACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGc                                                              <  1:2414957/91‑1 (MQ=255)

                              ttACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGc                                                              <  2:570663/91‑1 (MQ=255)

                              ttACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGc                                                              <  2:2481933/91‑1 (MQ=255)

                               tACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCa                                                             >  2:38568/1‑91 (MQ=255)

                                    aTGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATc                                                        <  2:1677560/91‑1 (MQ=255)

                                    aTGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATc                                                        >  2:1008001/1‑91 (MQ=255)

                                     tGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCg                                                       <  1:418259/91‑1 (MQ=255)

                                      gTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTGGTTGCTTATAAGCAATATCGt                                                      <  2:874576/91‑1 (MQ=255)

                                          aGTCCGGATTATCCTCGTTGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGtgatg                                                  >  1:3040355/1‑91 (MQ=255)

                                          aGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGtgatg                                                  <  1:1211310/91‑1 (MQ=255)

                                           gTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGtgatga                                                 >  1:715069/1‑91 (MQ=255)

                                              cGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGt                                              >  1:839071/1‑91 (MQ=255)

                                               ggATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTg                                             >  1:1362730/1‑91 (MQ=255)

                                               ggATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTg                                             <  2:1967161/91‑1 (MQ=255)

                                                 aTTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGcacttcatcacgatattgcttataagcaacaacaatatgatgaagtaca                                           <  1:2020211‑M1/91‑50 (MQ=255)

                                                  ttATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTTCTTATAAGCAATATCGTGATGAAGTGCAg                                          <  2:3373342/91‑1 (MQ=255)

                                                   tATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCatat                                                                               >  1:1541504/1‑53 (MQ=255)

                                                   tATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTg                                             <  1:571961/87‑1 (MQ=255)

                                                    aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGcacttcatcacgatattgcttataagcaacaacaatatgatgaagtacaaat                                        <  1:687814‑M1/91‑53 (MQ=255)

                                                    aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                        >  2:2822518/1‑91 (MQ=255)

                                                    aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                        <  2:3115962/91‑1 (MQ=255)

                                                    aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                        >  2:1397520/1‑91 (MQ=255)

                                                    aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                        <  2:3728998/91‑1 (MQ=255)

                                                     tCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcgc                                       <  2:3027467/91‑1 (MQ=255)

                                                     tCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcgc                                       <  2:1246223/91‑1 (MQ=255)

                                                     tCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcgc                                       >  1:2324789/1‑91 (MQ=255)

                                                     tCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcgc                                       >  1:2325101/1‑91 (MQ=255)

                                                        tCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCAt                                    >  2:2568620/1‑91 (MQ=255)

                                                        tCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCAt                                    <  2:2324842/91‑1 (MQ=255)

                                                         tgATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATc                                   <  2:772357/90‑1 (MQ=255)

                                                         cGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATc                                   >  2:3422938/1‑91 (MQ=255)

                                                         cGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATc                                   >  1:2151044/1‑91 (MQ=255)

                                                           aTGGTTTTAATCAAGTTATTTATTTTGATTTGcacttcatcacgatattgcttataagcaacaacaatatgatgaagtacaaatcaaaata                                 <  1:13373‑M1/91‑60 (MQ=255)

                                                            tGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAAc                                <  2:3333294/91‑1 (MQ=255)

                                                            tGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAAc                                <  1:897436/91‑1 (MQ=255)

                                                             ggTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACt                               <  2:2795577/91‑1 (MQ=255)

                                                             ggTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACt                               >  2:691135/1‑91 (MQ=255)

                                                             ggTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACt                               <  2:2318833/91‑1 (MQ=255)

                                                              gTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACtt                              >  2:1529975/1‑91 (MQ=255)

                                                              gTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACtt                              >  1:499115/1‑91 (MQ=255)

                                                               ttttAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTg                             >  1:1041754/1‑91 (MQ=255)

                                                                tttAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGa                            <  1:1410474/91‑1 (MQ=255)

                                                                tttAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGa                            >  2:966429/1‑91 (MQ=255)

                                                                 ttAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAt                           <  1:29490/91‑1 (MQ=255)

                                                                  tAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAtt                          <  1:1778063/91‑1 (MQ=255)

                                                                   aaTCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAttt                         <  2:2464405/91‑1 (MQ=255)

                                                                   aaTCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAttt                         >  1:3549852/1‑91 (MQ=255)

                                                                    aTCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAtttt                        >  1:196692/1‑91 (MQ=255)

                                                                     tCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTc                       <  1:441610/91‑1 (MQ=255)

                                                                     tCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTc                       <  1:2896801/91‑1 (MQ=255)

                                                                       aaGTTCTTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCtt                     <  2:3575235/91‑1 (MQ=255)

                                                                        aGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCttg                    >  1:2573515/1‑91 (MQ=255)

                                                                         gTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCttga                   <  1:1664184/91‑1 (MQ=255)

                                                                              ttatttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGAc              <  2:410960/91‑1 (MQ=255)

                                                                               tatttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACg             >  2:3232091/1‑91 (MQ=255)

                                                                                atttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGcaaatcaaaataaataacttgattaaaaccatc            <  2:2836728‑M2/91‑34 (MQ=255)

                                                                                  tttGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACgtgt          >  2:1374295/1‑91 (MQ=255)

                                                                                   ttGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACgtgtg         >  1:2280366/1‑91 (MQ=255)

                                                                                     gATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGtt       >  1:2282816/1‑91 (MQ=255)

                                                                                      aTTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTta      <  2:839071/91‑1 (MQ=255)

                                                                                      aTTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTta      <  1:2731785/91‑1 (MQ=255)

                                                                                      aTTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTta      <  2:3785219/91‑1 (MQ=255)

                                                                                      aTTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTta      <  2:3537072/91‑1 (MQ=255)

                                                                                        ttGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTtact    >  1:2535250/1‑91 (MQ=255)

                                                                                         tGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGcaaatcaaaataaataacttgattaaaaccatcgaggataat   <  1:2220090‑M2/91‑43 (MQ=255)

                                                                                         tGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTtacta   >  1:755674/1‑91 (MQ=255)

                                                                                         tGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTtacta   >  1:2555554/1‑91 (MQ=255)

                                                                                         tGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTtacta   >  1:1354265/1‑91 (MQ=255)

                                                                                          gcacttcatcacgatattgcttataagcaacaacaatatgatgaagtacaaatcaaaataaataacttgattaaaaccatcgaggataatc  <  1:639933‑M1/91‑91 (MQ=255)

                                                                                          gTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGcaaatcaaaataaataacttgattaaaaccatcgaggataatc  <  1:42808‑M2/91‑44 (MQ=255)

                                                                                          gTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTtactac  >  2:210952/1‑91 (MQ=255)

GCTTTTCATATTTTTGAATACTTGGTCTGATTACTGATGTTAAGTCCGGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAC  >  USA300TCH1516_ALE/46224‑46404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.