BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 46314	204 (1.070)	12 (0.060)	9/156	NT	5.3%	coding (1207/1629 nt)	hin_1	DNA‑invertase hin
*	?	USA300TCH1516_ALE	= 46361	228 (1.230)	12 (0.060)	9/156	NT	5.3%	coding (1160/1629 nt)	hin_1	DNA‑invertase hin

Only 100 of 275 total aligned reads displayed.

GGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTATTTGCTTC  >  USA300TCH1516_ALE/46271‑46450

ggATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTg                                                                                           <  1:296007/91‑1 (MQ=255)

 gATTATCCTCGATGGTGTTAATCAAGTTATTGAGGTGGATGTGGAGGTCATCATAGTGTTGTTGGTTATAAGTAATATCGTGATGAAGTgg                                                                                          >  2:2524186/1‑90 (MQ=255)

   ttATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAg                                                                                        >  2:3433709/1‑91 (MQ=255)

    tATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTg                                                                                           <  1:571961/87‑1 (MQ=255)

    tATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTg                                                                                           >  2:571961/1‑87 (MQ=255)

     aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                                                                      >  2:3333515/1‑91 (MQ=255)

     aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                                                                      >  2:2822518/1‑91 (MQ=255)

     aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                                                                      <  2:3728998/91‑1 (MQ=255)

     aTCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcg                                                                                      <  1:1138167/91‑1 (MQ=255)

      tCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcgc                                                                                     >  2:3824529/1‑91 (MQ=255)

      tCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAgcgc                                                                                     >  1:2325101/1‑91 (MQ=255)

       ccTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGcc                                                                                    >  1:1636427/1‑91 (MQ=255)

         tCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCAt                                                                                  >  2:2568620/1‑91 (MQ=255)

         tCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCAt                                                                                  <  2:2325101/91‑1 (MQ=255)

          cGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATc                                                                                 <  1:1700400/91‑1 (MQ=255)

          cGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATc                                                                                 <  1:792163/91‑1 (MQ=255)

            aTGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCaa                                                                               >  1:2906370/1‑91 (MQ=255)

             tGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAAc                                                                              <  1:2533252/91‑1 (MQ=255)

             tGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAAc                                                                              <  2:3332963/91‑1 (MQ=255)

             tGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAAc                                                                              <  2:2040045/91‑1 (MQ=255)

             tGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAAc                                                                              <  1:898611/91‑1 (MQ=255)

              ggTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACt                                                                             <  2:2795577/91‑1 (MQ=255)

              ggTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACt                                                                             <  2:1983743/91‑1 (MQ=255)

              ggTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACt                                                                             <  2:2318833/91‑1 (MQ=255)

              ggTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACt                                                                             >  2:691135/1‑91 (MQ=255)

               gTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACtt                                                                            <  2:3393793/91‑1 (MQ=255)

               gTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACtt                                                                            >  1:499115/1‑91 (MQ=255)

                ttttAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTg                                                                           >  1:1041754/1‑91 (MQ=255)

                 tttAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGa                                                                          <  2:2637510/91‑1 (MQ=255)

                   tAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAtt                                                                        >  2:908485/1‑91 (MQ=255)

                   tAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAtt                                                                        <  1:2792896/91‑1 (MQ=255)

                   tAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAtt                                                                        <  1:1778063/91‑1 (MQ=255)

                    aaTCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAttt                                                                       <  2:2464405/91‑1 (MQ=255)

                    aaTCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAttt                                                                       >  1:3729536/1‑91 (MQ=255)

                    aaTCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGAttt                                                                       >  1:3549852/1‑91 (MQ=255)

                        aaGTTCTTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCtt                                                                   <  2:3575235/91‑1 (MQ=255)

                        aaGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCtt                                                                   <  1:2828779/91‑1 (MQ=255)

                         aGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCttg                                                                  >  1:2573515/1‑91 (MQ=255)

                            tatttattTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCttgatt                                                               <  2:2098835/91‑1 (MQ=255)

                               ttatttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGAc                                                            <  2:410960/91‑1 (MQ=255)

                                tatttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGcaaatcaaaataaataacttgattaaaaccat                                                           <  1:13373‑M2/91‑33 (MQ=255)

                                tatttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACg                                                           >  2:3232080/1‑91 (MQ=255)

                                 atttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGcaaatcaaaataaataacttgattaaaaccatc                                                          <  2:2839068‑M2/91‑34 (MQ=255)

                                 atttTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACgt                                                          >  1:2307982/1‑91 (MQ=255)

                                   tttGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACgtgt                                                        >  2:1374295/1‑91 (MQ=255)

                                   tttGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACgtgt                                                        >  1:1872110/1‑91 (MQ=255)

                                    ttGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACgtgtg                                                       >  1:2280367/1‑91 (MQ=255)

                                       aTTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTta                                                    <  2:839071/91‑1 (MQ=255)

                                       aTTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTta                                                    <  1:2386505/91‑1 (MQ=255)

                                       aTTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTta                                                    <  2:3537072/91‑1 (MQ=255)

                                          tGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTtacta                                                 <  1:1285694/91‑1 (MQ=255)

                                           gTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGcaaatcaaaataaataacttgattaaaaccatcgaggataatc                                                <  1:42964‑M2/91‑44 (MQ=255)

                                            tACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAcg                                               >  1:672701/1‑91 (MQ=255)

                                            tACTTCATCATATTGTTGTTGCTTATAAGCAATATCGCGATGACGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAcg                                               >  1:1362241/1‑91 (MQ=255)

                                             aCTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAcgc                                              >  1:1868985/1‑91 (MQ=255)

                                             aCTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAcgc                                              >  2:1649094/1‑91 (MQ=255)

                                             aCTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAcgc                                              >  1:2928809/1‑91 (MQ=255)

                                              cTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAcgcg                                             >  2:1189193/1‑91 (MQ=255)

                                              cTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTAcgcg                                             >  1:2270966/1‑91 (MQ=255)

                                               ttCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGt                                            <  1:3197275/91‑1 (MQ=255)

                                               ttCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGt                                            <  1:1478988/91‑1 (MQ=255)

                                                tcatcaTATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGtt                                           <  2:1355833/91‑1 (MQ=255)

                                                 catcatATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTg                                          <  1:1007219/91‑1 (MQ=255)

                                                 catcatATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTg                                          <  2:1078760/91‑1 (MQ=255)

                                                   tcatATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGaa                                        <  1:2201667/91‑1 (MQ=255)

                                                       atTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGAc                                    >  1:1384073/1‑91 (MQ=255)

                                                       atTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGAc                                    >  1:1967605/1‑91 (MQ=255)

                                                        ttgttgttgCTTATAAGCAATATGATGATGAAGTGCAGCGCCAGCAACTTCATTCTCTTGATTGACGTGTGTTACTACGCGTTAAATGACt                                   <  2:3611104/91‑1 (MQ=255)

                                                        ttgttgttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACCACGCGTTGAATGACt                                   <  2:3281592/91‑1 (MQ=255)

                                                          gttgttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACttt                                 <  1:414590/91‑1 (MQ=255)

                                                           ttgttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTa                                >  1:2197865/1‑91 (MQ=255)

                                                            tgttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTAt                               <  1:1571372/91‑1 (MQ=255)

                                                             gttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATc                              >  2:2070016/1‑91 (MQ=255)

                                                             gttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATc                              <  1:21664/91‑1 (MQ=255)

                                                             gttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATc                              <  2:2911606/91‑1 (MQ=255)

                                                              ttgCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCa                             >  1:2100197/1‑91 (MQ=255)

                                                                gCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACt                           >  2:1945763/1‑91 (MQ=255)

                                                                gCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACt                           <  1:699592/91‑1 (MQ=255)

                                                                gCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACt                           >  2:3099933/1‑91 (MQ=255)

                                                                gCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACt                           >  2:534021/1‑91 (MQ=255)

                                                                   tataAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACtttt                        <  2:2922970/91‑1 (MQ=255)

                                                                     taAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGa                      >  1:2555027/1‑91 (MQ=255)

                                                                      aaGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGAc                     >  2:1281735/1‑91 (MQ=255)

                                                                      aaGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGAc                     >  2:637010/1‑91 (MQ=255)

                                                                       aGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACt                    >  1:2700878/1‑91 (MQ=255)

                                                                       aGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACt                    <  1:874414/91‑1 (MQ=255)

                                                                         cAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTAt                  <  1:619883/91‑1 (MQ=255)

                                                                           atatCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTAttt                >  2:2309489/1‑91 (MQ=255)

                                                                           atatCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTAttt                >  2:2238712/1‑91 (MQ=255)

                                                                            tatCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTc               >  1:334595/1‑91 (MQ=255)

                                                                              tCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCaa             <  1:38568/91‑1 (MQ=255)

                                                                              tCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCaa             >  1:2685727/1‑91 (MQ=255)

                                                                                gTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGt           <  2:3017130/91‑1 (MQ=255)

                                                                                  gatgaAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTAt         >  1:2260974/1‑91 (MQ=255)

                                                                                   atgaAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTAtt        >  2:1485261/1‑91 (MQ=255)

                                                                                   atgaAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGCAtt        >  1:3496016/1‑91 (MQ=255)

                                                                                    tgaAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTAttt       <  1:3388463/91‑1 (MQ=255)

                                                                                    tgaAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTAttt       <  2:1579760/91‑1 (MQ=255)

                                                                                       aGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTATTTGCt    <  1:3211611/91‑1 (MQ=255)

                                                                                       aGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTATTTGCt    >  1:2607131/1‑91 (MQ=255)

GGATTATCCTCGATGGTTTTAATCAAGTTATTTATTTTGATTTGTACTTCATCATATTGTTGTTGCTTATAAGCAATATCGTGATGAAGTGCAGCGCCATCAACTTGATTTTCTTGATTGACGTGTGTTACTACGCGTTGAATGACTTTATCACTTTTGACTATTTCAAGTATTTGCTTC  >  USA300TCH1516_ALE/46271‑46450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.