| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 68500 = | NA (NA) | 7 (0.040) | 7/154 | NT | 5.7% | coding (616/852 nt) | USA300TCH1516_00061 | hypothetical protein |
| ? | USA300TCH1516_ALE | 68542 = | 120 (0.630) | coding (658/852 nt) | USA300TCH1516_00061 | hypothetical protein | |||||
GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/68589‑68500‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATT > USA300TCH1516_ALE/68542‑68634 GTAAAAAGTTTCAGTCTTTAGCGGTGAATGGAAACTTTCTATCTGGGCGTGATCGGCAGGTGTTCCCTTTCGGGACATACTTCGGATAATG < 2:3608021/91‑1GTAAAAAGTTTCAGACTTTAGCGAGTAATGGAAACTTTCTATCGGGGCGTTATCGTCAGGTGTTCCCTTTCGGTACATACTTCTGATAATG < 2:1331544/91‑1GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG < 1:1149860/91‑1GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG > 2:33008/1‑91GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG > 2:2365055/1‑91GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG < 2:2097792/91‑1GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG > 2:152818/1‑91GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG < 2:1331629/91‑1GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATG < 2:1229712/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 1:1871542/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 2:695463/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 2:1396487/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 1:1608832/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 2:2920760/91‑1 TAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC > 2:1204070/1‑91 AAATAGTTTCAGACTGTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATATTGCC < 1:3062401/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 2:1587839/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 1:1332169/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 1:1203669/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 2:2544865/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 1:522905/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 2:2544973/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC < 1:3227217/91‑1 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC > 1:2481332/1‑91 AAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCC > 1:2480397/1‑91 AGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC < 1:1819503/80‑1 AGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGC > 2:1819503/1‑80 GAAACTTTCTATCGGGGCGTTATTGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGCTAGAAAGTTTCCATTCCTCGCTAA > 2:952527/1‑91 TCGGGGCGTTATTGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACT < 1:952527/91‑1 GGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTT > 1:1855573/1‑91 GGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTT > 1:2021591/1‑91 GGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTT > 2:630718/1‑91 TATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATC > 1:1199442/1‑91 CTTCTGATAATGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACAT < 1:630718/91‑1 GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATA < 2:62071/91‑1 GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATA > 2:2439505/1‑91 GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATA > 1:1070990/1‑91 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAGTCACTCTAATCACATTGTAATAGATAT < 2:1505198/91‑1 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT > 2:3154276/1‑91 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT > 2:3262495/1‑91 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT > 1:1791129/1‑91 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT < 2:1504326/91‑1 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT < 2:1608832/91‑1 CCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATAT > 1:1602225/1‑91 CCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATT < 1:3440260/91‑1 CCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATT < 1:3827489/91‑1 GTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCCTTTCGGGACATACTTCTGATAATgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/68589‑68500‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATT > USA300TCH1516_ALE/68542‑68634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |