New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 68500 =NA (NA)7 (0.040) 7/154 NT 5.7% coding (616/852 nt) USA300TCH1516_00061 hypothetical protein
?USA300TCH1516_ALE 68542 = 120 (0.630)coding (658/852 nt) USA300TCH1516_00061 hypothetical protein

Only 100 of 139 total aligned reads displayed.

ATCGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAA  >  USA300TCH1516_ALE/68410‑68572
                                                                                          |                                                                        
atcGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCa                                                                          >  1:152818/1‑91 (MQ=39)
atcGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCa                                                                          <  2:793971/91‑1 (MQ=38)
 tcGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAt                                                                         <  1:2850207/91‑1 (MQ=38)
  cGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAtt                                                                        <  1:3425438/91‑1 (MQ=39)
  cGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAtt                                                                        <  1:2971068/91‑1 (MQ=39)
  cGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAtt                                                                        <  1:2221511/91‑1 (MQ=39)
  cGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAtt                                                                        <  1:1773605/91‑1 (MQ=39)
  cGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCAtt                                                                        <  1:1773334/91‑1 (MQ=38)
    atatACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTAt                                                                      >  1:2338029/1‑91 (MQ=38)
      ataCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTTTCa                                                                    >  2:143896/1‑91 (MQ=255)
       taCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAg                                                                   <  2:325683/91‑1 (MQ=39)
        aCCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGa                                                                  >  1:1113940/1‑91 (MQ=39)
         ccTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGaa                                                                 >  1:2426194/1‑91 (MQ=39)
         ccTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGaa                                                                 >  2:1832335/1‑91 (MQ=39)
             aGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTAt                                                             >  2:1257146/1‑91 (MQ=39)
             aGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTAt                                                             >  1:2934013/1‑91 (MQ=39)
             aGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTAt                                                             >  2:3156725/1‑91 (MQ=39)
              gggTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATg                                                            <  1:407506/91‑1 (MQ=39)
               ggTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGt                                                           <  1:2229754/91‑1 (MQ=38)
               ggTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGt                                                           >  1:2495722/1‑91 (MQ=38)
               ggTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGt                                                           <  1:2141044/91‑1 (MQ=38)
                gTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTc                                                          <  1:3623420/91‑1 (MQ=37)
                gTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTc                                                          <  1:1223794/91‑1 (MQ=37)
                 ttGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTcc                                                         >  1:3851115/1‑91 (MQ=35)
                  tGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTccc                                                        <  2:342821/91‑1 (MQ=34)
                  tGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTccc                                                        <  1:2028153/91‑1 (MQ=34)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATGCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCg                                                       >  2:1004669/1‑91 (MQ=21)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCg                                                       >  2:2562452/1‑91 (MQ=34)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCg                                                       >  2:3083275/1‑91 (MQ=33)
                   gTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCg                                                       >  2:1754948/1‑91 (MQ=33)
                    tataTTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGa                                                      >  1:1560435/1‑91 (MQ=34)
                       atTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAg                                                   >  2:3241614/1‑91 (MQ=33)
                        ttACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAgg                                                  <  1:749049/91‑1 (MQ=34)
                         tACGTAGTGGTCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                 <  1:3484611/91‑1 (MQ=255)
                         tACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                 <  1:457230/91‑1 (MQ=34)
                         tACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                 <  1:1736890/91‑1 (MQ=34)
                         tACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                 <  2:3536301/91‑1 (MQ=34)
                         tACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                 <  2:1000783/91‑1 (MQ=34)
                         tACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                 <  2:3694021/91‑1 (MQ=34)
                         tACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAggg                                                 <  1:34955/91‑1 (MQ=34)
                          aCATAGTGATCAAGGCAGCGTTTATTCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGa                                                <  1:3600101/91‑1 (MQ=21)
                          aCATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGa                                                >  1:1495946/1‑91 (MQ=34)
                           cATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAAAAGAAAAAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGaa                                               <  2:3288786/91‑1 (MQ=11)
                            aTAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAac                                              >  2:2874853/1‑91 (MQ=34)
                             tAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAaca                                             <  1:3673449/91‑1 (MQ=34)
                              aGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAacac                                            <  1:2889874/91‑1 (MQ=34)
                               gTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACAcc                                           >  2:3699119/1‑91 (MQ=34)
                                tGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCt                                          >  1:1401893/1‑91 (MQ=34)
                                 gATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTg                                         >  1:1192180/1‑91 (MQ=34)
                                 gATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTg                                         >  1:3693856/1‑91 (MQ=34)
                                  aTCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGc                                        >  1:1504326/1‑91 (MQ=34)
                                     aaGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGa                                     >  1:1322954/1‑91 (MQ=34)
                                       ggCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATa                                   <  1:1988851/91‑1 (MQ=34)
                                        gCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATaa                                  <  2:3180528/91‑1 (MQ=34)
                                        gCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATaa                                  <  1:2566834/91‑1 (MQ=34)
                                         cAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAAc                                 <  2:670017/91‑1 (MQ=34)
                                          aGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAAca                                <  2:821951/91‑2 (MQ=18)
                                          aGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAAc                                 >  2:1791082/1‑90 (MQ=35)
                                          aGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAAc                                 <  1:1791082/90‑1 (MQ=35)
                                           gCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGc                               >  1:2274126/1‑91 (MQ=34)
                                            cGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGcc                              <  2:2480406/91‑1 (MQ=34)
                                                 ataCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGAt                         <  1:3420996/91‑1 (MQ=34)
                                                   aCATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAg                       <  1:2289670/91‑1 (MQ=34)
                                                    cATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGa                      <  1:3321939/91‑1 (MQ=34)
                                                    cATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGa                      >  2:3545221/1‑91 (MQ=34)
                                                    cATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGa                      <  2:3117521/91‑1 (MQ=34)
                                                     aTCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGaa                     <  1:3407851/91‑1 (MQ=34)
                                                     aTCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGaa                     <  1:500319/91‑1 (MQ=33)
                                                      tCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGaaa                    >  1:896947/1‑91 (MQ=34)
                                                      tCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGaaa                    >  2:1264487/1‑91 (MQ=34)
                                                      tCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGaaa                    <  2:1560435/91‑1 (MQ=34)
                                                       cTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAg                   >  1:3332553/1‑91 (MQ=34)
                                                        ttATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGt                  <  2:2429491/91‑1 (MQ=34)
                                                         tATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGtt                 <  1:3690300/91‑1 (MQ=33)
                                                          aTGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGttt                >  2:697923/1‑91 (MQ=34)
                                                            gCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTcc              <  1:66851/91‑1 (MQ=34)
                                                            gCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTCTcc              >  2:1055336/1‑91 (MQ=21)
                                                             cTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCa             <  2:2737484/91‑1 (MQ=33)
                                                               tattatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGt                                                           <  2:599693/43‑1 (MQ=40)
                                                               tattatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGt                                                           >  1:599693/1‑43 (MQ=40)
                                                               tattatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCAtt           >  2:2430203/1‑91 (MQ=34)
                                                               tattatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCAtt           >  1:1753526/1‑91 (MQ=34)
                                                                attatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTc          <  2:3502503/91‑1 (MQ=34)
                                                                attatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTc          <  2:1210875/91‑1 (MQ=34)
                                                                 ttatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTcc         >  1:3220979/1‑91 (MQ=34)
                                                                  tatCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCt        <  1:1858497/91‑1 (MQ=34)
                                                                   atCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTc       <  1:1589179/91‑1 (MQ=33)
                                                                   atCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTc       <  2:14867/91‑1 (MQ=34)
                                                                    tCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCg      <  1:2863694/91‑1 (MQ=34)
                                                                    tCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCg      >  1:65154/1‑91 (MQ=34)
                                                                     cAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGc     >  1:2095734/1‑91 (MQ=34)
                                                                      aaTTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCt    <  1:460984/91‑1 (MQ=34)
                                                                       aTTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTa   <  2:3535321/91‑1 (MQ=34)
                                                                       aTTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTa   >  1:1069458/1‑91 (MQ=34)
                                                                       aTTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTa   >  1:2019940/1‑91 (MQ=33)
                                                                       aTTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTa   >  1:2327780/1‑91 (MQ=34)
                                                                        ttGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTaa  <  1:3345459/91‑1 (MQ=33)
                                                                        ttGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTaa  >  1:592577/1‑91 (MQ=33)
                                                                        ttGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTaa  <  1:3156550/91‑1 (MQ=33)
                                                                        ttGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTaa  <  1:3156725/91‑1 (MQ=33)
                                                                                          |                                                                        
ATCGATATACCTGAGGGTTGTATATTACATAGTGATCAAGGCAGCGTTTATACATCTTATGCTTATTATCAATTGTGCGAAGAAAAAGGCATTATCAGAAGTATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAA  >  USA300TCH1516_ALE/68410‑68572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.