| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 110682 | 232 (1.220) | 17 (0.100) | 8/150 | NT | 6.6% | coding (541/771 nt) | USA300HOU_RS00515 | putative lipoprotein |
| ? | USA300TCH1516_ALE | = 110687 | 260 (1.460) | coding (546/771 nt) | USA300HOU_RS00515 | putative lipoprotein | |||||
AATCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/110588‑110682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTTAAA < USA300TCH1516_ALE/110687‑110598 AATCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTG < 1:2717042/91‑1 gTCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGC < 2:506136/90‑1 ATCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGC < 2:200992/91‑1 ATCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGC > 1:2752790/1‑91 ATCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTCGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGC < 2:3883776/91‑1 TCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCC < 1:1564059/91‑1 TCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCC > 1:3647507/1‑91 TCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCC < 2:457514/91‑1 TCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCC < 1:3770790/91‑1 CGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCG > 2:2872867/1‑91 CGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCG > 1:373811/1‑91 GAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA < 1:2744217/91‑1 GAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA < 2:1533247/91‑1 GAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA > 1:31146/1‑91 GAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA > 1:973925/1‑91 GAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA < 1:2431696/91‑1 GAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA < 2:546542/91‑1 AACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATA < 2:834855/91‑1 AACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATA < 1:2234178/91‑1 AACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATA < 2:3622905/91‑1 AACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATA < 1:2042652/91‑1 AACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATA < 2:3166/91‑1 AACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATA < 1:3563096/91‑1 ACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAGAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAA < 2:2424606/91‑1 ACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAA < 2:2151679/91‑1 ACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAA < 1:393780/91‑1 ACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAA < 1:394171/91‑1 CTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAAC < 2:137392/91‑1 CTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAAC < 1:1795058/91‑1 TTTAAGTTCTTTGTTCAATATGGCGACTTTAATAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACT < 1:3300541/91‑1 TTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACT < 2:3585018/91‑1 TTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACT < 2:2094917/91‑1 TTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACT < 1:3478935/91‑1 TTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACT < 1:32710/91‑1 TTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACT < 1:2749788/91‑1 TTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACT < 1:1013113/91‑1 TTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACTC < 2:2357771/91‑1 TAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAATAACTCG < 1:1114285/91‑1 aACTTTAAAGAGTTGTGGAAGTATAATGACGGAGATATTTCTTATAATCCAGAGGTGCCGAATAACTCGGCACCTCTGGATTATATGAAAT < 2:565260/90‑1 AAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCC > 2:928772/1‑91 gAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAATAACTCGGCACCTCTGGATTATATGATATATCTCCATCTTTATAAT < 2:2336079/90‑1 ATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTT > 2:1119699/1‑91 TTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTT > 2:1797127/1‑91 ATCCAGAGGTGCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGA > 1:2093230/1‑91 TCCAGAGGTGCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAA > 1:2116673/1‑91 TCCAGAGGTGCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAA > 1:2116498/1‑91 GCCGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTGAAGTCGCCATATTGAACAAAGAACT > 1:3622566/1‑91 GCCGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTATAGTCGCCATATTGAACAAAGAACT > 2:3615017/1‑91 GCCGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACT < 2:686095/91‑1 GCCGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACT < 1:1207956/91‑1 CCGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTT > 2:1085536/1‑91 CCGAATAACTCGGCACCTCTGGATTATATGAAATATCTACGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTT > 2:3819147/1‑91 CGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTTA > 2:2922342/1‑91 CGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTTA > 1:1756207/1‑91 CGAATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTTA > 1:1755936/1‑91 AATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTTAAA > 1:3296761/1‑91 AATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTTAAA > 2:1716669/1‑91 AATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTATTAAAGTCGCCATAGTGAACAAAGAACTTAAA > 1:3317703/1‑91 AATCGAAAACTTTAAGTTCTTTGTTCAATATGGCGACTTTAAAAATTTGAAAAATTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/110588‑110682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaATAACTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATAATTTTTCAAATTTTTAAAGTCGCCATATTGAACAAAGAACTTAAA < USA300TCH1516_ALE/110687‑110598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |