| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 145658 | 178 (0.930) | 9 (0.050) | 6/140 | NT | 5.3% | intergenic (+83/‑113) | noc_1/USA300HOU_RS00655 | Nucleoid occlusion protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 145678 | 165 (0.990) | intergenic (+103/‑93) | noc_1/USA300HOU_RS00655 | Nucleoid occlusion protein/hypothetical protein | |||||
ACTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/145559‑145658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagaacttCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTCAA < USA300TCH1516_ALE/145678‑145589 ACTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACGATATAGTGT > 1:3728080/1‑91ACTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGT > 2:368002/1‑91ACTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTAGTGATAGCGAAAATATAATAAAACAATATAGTGT > 2:1155535/1‑91 CTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTG < 2:913267/91‑1 CTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTG < 2:909863/91‑1 CTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTG < 1:2465088/91‑1 CTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTG < 2:451993/91‑1 TGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGA > 2:137664/1‑91 TGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGA > 2:144997/1‑91 GGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAG < 2:2162180/91‑1 GGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAAC > 2:552813/1‑91 GGAGCAATAGTTTTACTGTGATGTTGAGGAAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAAC < 2:2447654/91‑1 GAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACT > 2:1580607/1‑91 GTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAA < 1:2876561/91‑1 GTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAA < 1:2876209/91‑1 TTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAAA < 2:418977/91‑1 TTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAAA < 1:2863951/91‑1 TTGAGGGAAATAAGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAAA < 1:1208673/91‑1 TGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAAAA < 1:3147648/91‑1 AGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAAAAGT < 1:618440/91‑1 TGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACAC < 1:3122427/91‑1 TATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTAT < 2:2507141/91‑1 agGGAGAACTGCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATA < 2:617313/89‑1 GGAGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCATTACGCTAAATCATCATATT < 2:3389348/91‑1 GGAGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATT < 1:3769794/91‑1 GGAGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATT < 1:3769779/91‑1 GGAGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATT < 2:611482/91‑1 GGAGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATT < 2:3495673/91‑1 AGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTC < 2:2948803/91‑1 AGAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTC < 2:2948748/91‑1 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 2:3612491/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC < 2:901249/91‑1 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 1:1553341/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 2:2583727/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 2:1767848/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 1:3144117/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 2:1742272/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 2:1742088/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 1:3145502/1‑91 GAACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCC > 1:572283/1‑91 ACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCT > 2:192881/1‑91 ACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCT > 2:3114131/1‑91 ACTTCAATATTTATAAAATATCAAAAGTTCTCCACACTAGATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCT < 2:466666/91‑1 CTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTC > 2:1488144/1‑91 CTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTC > 1:3155816/1‑91 CTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTC > 1:1846748/1‑91 CTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTC > 1:1842802/1‑91 CTTCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTGTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTC < 1:3077558/91‑1 TCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTCAA < 2:1630601/91‑1 TCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTCAA < 1:2129622/91‑1 ACTTGGTGGAGCAATAGTTTTACTGTGATGTTGAGGGAAATATGATGATTTAGCGTATTGATAGCGAAAATATAATAAAACAATATAGTGTGGAGAACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/145559‑145658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagaacttCAATATTTATAAAATATCAAAAGTTCTCCACACTATATTGTTTTATTATATTTTCGCTATCAATACGCTAAATCATCATATTTCCCTCAA < USA300TCH1516_ALE/145678‑145589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |